Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_18630

Experiment: m.b. copper (II) chloride 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_18625 and CA264_18630 are separated by 301 nucleotidesCA264_18630 and CA264_18635 are separated by 36 nucleotidesCA264_18635 and CA264_18640 are separated by 83 nucleotides CA264_18625: CA264_18625 - rod shape-determining protein, at 4,330,763 to 4,331,788 _18625 CA264_18630: CA264_18630 - bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase, at 4,332,090 to 4,333,613 _18630 CA264_18635: CA264_18635 - phosphoribosylglycinamide formyltransferase, at 4,333,650 to 4,334,237 _18635 CA264_18640: CA264_18640 - ATPase, at 4,334,321 to 4,334,704 _18640 Position (kb) 4332 4333 4334Strain fitness (log2 ratio) -1 0 1 2at 4331.797 kb on - strandat 4331.833 kb on + strandat 4331.833 kb on + strandat 4331.894 kb on + strandat 4331.895 kb on - strandat 4332.520 kb on - strand, within CA264_18630at 4332.542 kb on + strand, within CA264_18630at 4332.542 kb on + strand, within CA264_18630at 4332.607 kb on - strand, within CA264_18630at 4332.760 kb on + strand, within CA264_18630at 4332.938 kb on - strand, within CA264_18630at 4332.993 kb on + strand, within CA264_18630at 4333.144 kb on - strand, within CA264_18630at 4333.147 kb on - strand, within CA264_18630at 4333.147 kb on - strand, within CA264_18630at 4333.333 kb on + strand, within CA264_18630at 4333.430 kb on + strand, within CA264_18630at 4333.455 kb on + strand, within CA264_18630at 4333.513 kb on + strandat 4333.513 kb on + strandat 4333.513 kb on + strandat 4333.514 kb on - strandat 4333.514 kb on - strandat 4333.573 kb on + strandat 4333.637 kb on - strandat 4333.651 kb on + strandat 4333.678 kb on - strandat 4333.807 kb on + strand, within CA264_18635at 4333.891 kb on + strand, within CA264_18635at 4333.891 kb on + strand, within CA264_18635at 4333.892 kb on - strand, within CA264_18635at 4333.892 kb on - strand, within CA264_18635at 4333.914 kb on + strand, within CA264_18635at 4333.914 kb on + strand, within CA264_18635at 4333.914 kb on + strand, within CA264_18635at 4333.914 kb on + strand, within CA264_18635at 4334.102 kb on - strand, within CA264_18635at 4334.228 kb on + strandat 4334.229 kb on - strandat 4334.252 kb on - strandat 4334.267 kb on - strandat 4334.276 kb on + strandat 4334.283 kb on + strandat 4334.284 kb on - strandat 4334.284 kb on - strandat 4334.304 kb on + strandat 4334.304 kb on + strandat 4334.358 kb on + strandat 4334.440 kb on - strand, within CA264_18640at 4334.590 kb on + strand, within CA264_18640

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.16 mM
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4,331,797 - +1.5
4,331,833 + +0.9
4,331,833 + -0.7
4,331,894 + +0.2
4,331,895 - +0.5
4,332,520 - CA264_18630 0.28 -0.5
4,332,542 + CA264_18630 0.30 -1.6
4,332,542 + CA264_18630 0.30 +1.5
4,332,607 - CA264_18630 0.34 -0.6
4,332,760 + CA264_18630 0.44 -0.3
4,332,938 - CA264_18630 0.56 -1.4
4,332,993 + CA264_18630 0.59 +0.4
4,333,144 - CA264_18630 0.69 -1.0
4,333,147 - CA264_18630 0.69 +0.2
4,333,147 - CA264_18630 0.69 +0.1
4,333,333 + CA264_18630 0.82 -0.3
4,333,430 + CA264_18630 0.88 -0.1
4,333,455 + CA264_18630 0.90 -0.3
4,333,513 + -0.8
4,333,513 + -0.1
4,333,513 + -0.4
4,333,514 - +0.4
4,333,514 - +2.6
4,333,573 + +0.5
4,333,637 - -1.1
4,333,651 + +0.0
4,333,678 - -0.4
4,333,807 + CA264_18635 0.27 -0.6
4,333,891 + CA264_18635 0.41 -1.7
4,333,891 + CA264_18635 0.41 -0.6
4,333,892 - CA264_18635 0.41 -1.6
4,333,892 - CA264_18635 0.41 -0.1
4,333,914 + CA264_18635 0.45 -1.6
4,333,914 + CA264_18635 0.45 +0.0
4,333,914 + CA264_18635 0.45 -0.6
4,333,914 + CA264_18635 0.45 -0.2
4,334,102 - CA264_18635 0.77 -1.4
4,334,228 + -0.2
4,334,229 - +0.6
4,334,252 - -0.4
4,334,267 - -0.2
4,334,276 + +0.0
4,334,283 + +0.5
4,334,284 - +0.9
4,334,284 - -0.2
4,334,304 + +0.2
4,334,304 + -1.3
4,334,358 + -0.9
4,334,440 - CA264_18640 0.31 -1.2
4,334,590 + CA264_18640 0.70 -0.0

Or see this region's nucleotide sequence