Experiment: m.b. copper (II) chloride 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_17710 and CA264_17715 are separated by 242 nucleotides CA264_17715 and CA264_17720 are separated by 66 nucleotides CA264_17720 and CA264_17725 are separated by 147 nucleotides CA264_17725 and CA264_17730 are separated by 20 nucleotides
CA264_17710: CA264_17710 - hypothetical protein, at 4,121,077 to 4,121,814
_17710
CA264_17715: CA264_17715 - hypothetical protein, at 4,122,057 to 4,122,557
_17715
CA264_17720: CA264_17720 - beta-ketoadipyl CoA thiolase, at 4,122,624 to 4,123,823
_17720
CA264_17725: CA264_17725 - tRNA pseudouridine synthase A, at 4,123,971 to 4,124,723
_17725
CA264_17730: CA264_17730 - methionine gamma-lyase, at 4,124,744 to 4,126,051
_17730
Position (kb)
4122
4123
4124 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4121.704 kb on + strand, within CA264_17710 at 4121.704 kb on + strand, within CA264_17710 at 4121.705 kb on - strand, within CA264_17710 at 4121.710 kb on + strand, within CA264_17710 at 4121.711 kb on - strand, within CA264_17710 at 4121.716 kb on + strand, within CA264_17710 at 4121.716 kb on + strand, within CA264_17710 at 4121.717 kb on - strand, within CA264_17710 at 4121.744 kb on - strand at 4121.744 kb on - strand at 4121.750 kb on - strand at 4121.883 kb on + strand at 4121.888 kb on + strand at 4121.981 kb on - strand at 4122.021 kb on + strand at 4122.552 kb on + strand at 4122.557 kb on + strand at 4122.557 kb on + strand at 4122.557 kb on + strand at 4122.558 kb on - strand at 4122.558 kb on - strand at 4122.572 kb on - strand at 4122.582 kb on - strand at 4122.595 kb on - strand at 4122.629 kb on + strand at 4122.629 kb on + strand at 4122.629 kb on + strand at 4122.636 kb on + strand at 4122.636 kb on + strand at 4122.636 kb on + strand at 4122.637 kb on - strand at 4122.639 kb on - strand at 4122.639 kb on - strand at 4122.640 kb on + strand at 4122.640 kb on + strand at 4122.641 kb on - strand at 4122.641 kb on - strand at 4122.648 kb on - strand at 4122.649 kb on + strand at 4122.649 kb on + strand at 4122.650 kb on - strand at 4122.653 kb on + strand at 4122.653 kb on + strand at 4122.653 kb on + strand at 4122.654 kb on - strand at 4122.654 kb on - strand at 4122.823 kb on + strand, within CA264_17720 at 4122.824 kb on - strand, within CA264_17720 at 4122.875 kb on + strand, within CA264_17720 at 4122.911 kb on + strand, within CA264_17720 at 4122.911 kb on + strand, within CA264_17720 at 4122.932 kb on + strand, within CA264_17720 at 4122.955 kb on + strand, within CA264_17720 at 4122.956 kb on - strand, within CA264_17720 at 4122.957 kb on + strand, within CA264_17720 at 4122.981 kb on - strand, within CA264_17720 at 4123.023 kb on + strand, within CA264_17720 at 4123.045 kb on - strand, within CA264_17720 at 4123.071 kb on - strand, within CA264_17720 at 4123.080 kb on - strand, within CA264_17720 at 4123.089 kb on - strand, within CA264_17720 at 4123.182 kb on - strand, within CA264_17720 at 4123.182 kb on - strand, within CA264_17720 at 4123.182 kb on - strand, within CA264_17720 at 4123.193 kb on - strand, within CA264_17720 at 4123.197 kb on + strand, within CA264_17720 at 4123.197 kb on + strand, within CA264_17720 at 4123.388 kb on - strand, within CA264_17720 at 4123.443 kb on - strand, within CA264_17720 at 4123.443 kb on - strand, within CA264_17720 at 4123.490 kb on - strand, within CA264_17720 at 4123.555 kb on + strand, within CA264_17720 at 4123.556 kb on - strand, within CA264_17720 at 4123.585 kb on + strand, within CA264_17720 at 4123.612 kb on + strand, within CA264_17720 at 4123.658 kb on - strand, within CA264_17720 at 4123.658 kb on - strand, within CA264_17720 at 4123.658 kb on - strand, within CA264_17720 at 4123.670 kb on + strand, within CA264_17720 at 4123.670 kb on + strand, within CA264_17720 at 4123.704 kb on - strand at 4123.765 kb on + strand at 4123.804 kb on + strand at 4123.810 kb on - strand at 4123.820 kb on - strand at 4123.821 kb on + strand at 4123.822 kb on - strand at 4123.822 kb on - strand at 4123.822 kb on - strand at 4123.960 kb on - strand at 4123.990 kb on + strand at 4124.071 kb on + strand, within CA264_17725 at 4124.075 kb on + strand, within CA264_17725 at 4124.080 kb on + strand, within CA264_17725 at 4124.080 kb on + strand, within CA264_17725 at 4124.124 kb on - strand, within CA264_17725 at 4124.192 kb on - strand, within CA264_17725 at 4124.244 kb on + strand, within CA264_17725 at 4124.245 kb on - strand, within CA264_17725 at 4124.301 kb on + strand, within CA264_17725 at 4124.337 kb on + strand, within CA264_17725 at 4124.340 kb on + strand, within CA264_17725 at 4124.341 kb on - strand, within CA264_17725 at 4124.397 kb on - strand, within CA264_17725 at 4124.397 kb on - strand, within CA264_17725 at 4124.397 kb on - strand, within CA264_17725 at 4124.405 kb on + strand, within CA264_17725 at 4124.406 kb on - strand, within CA264_17725 at 4124.543 kb on + strand, within CA264_17725 at 4124.544 kb on - strand, within CA264_17725 at 4124.634 kb on - strand, within CA264_17725 at 4124.671 kb on + strand at 4124.672 kb on - strand at 4124.673 kb on + strand at 4124.674 kb on - strand at 4124.702 kb on + strand at 4124.702 kb on + strand at 4124.703 kb on - strand at 4124.708 kb on - strand at 4124.734 kb on - strand at 4124.739 kb on + strand at 4124.740 kb on - strand at 4124.740 kb on - strand at 4124.740 kb on - strand at 4124.740 kb on - strand at 4124.743 kb on + strand at 4124.744 kb on - strand at 4124.751 kb on + strand at 4124.751 kb on + strand at 4124.778 kb on + strand at 4124.786 kb on - strand at 4124.808 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.16 mM remove 4,121,704 + CA264_17710 0.85 -0.6 4,121,704 + CA264_17710 0.85 -1.1 4,121,705 - CA264_17710 0.85 -0.0 4,121,710 + CA264_17710 0.86 +0.5 4,121,711 - CA264_17710 0.86 +1.6 4,121,716 + CA264_17710 0.87 -0.6 4,121,716 + CA264_17710 0.87 -0.2 4,121,717 - CA264_17710 0.87 +2.4 4,121,744 - -0.0 4,121,744 - -0.1 4,121,750 - +0.6 4,121,883 + +1.5 4,121,888 + -0.7 4,121,981 - +2.0 4,122,021 + +0.0 4,122,552 + -0.9 4,122,557 + +0.0 4,122,557 + -0.4 4,122,557 + +1.3 4,122,558 - -2.0 4,122,558 - -0.3 4,122,572 - +0.4 4,122,582 - +0.6 4,122,595 - -0.3 4,122,629 + -0.3 4,122,629 + -0.7 4,122,629 + +0.0 4,122,636 + +0.3 4,122,636 + -0.3 4,122,636 + +1.3 4,122,637 - +0.4 4,122,639 - -0.1 4,122,639 - +0.8 4,122,640 + +0.4 4,122,640 + -0.5 4,122,641 - -0.3 4,122,641 - -0.5 4,122,648 - +0.6 4,122,649 + +0.1 4,122,649 + +0.2 4,122,650 - +0.7 4,122,653 + -0.1 4,122,653 + +0.5 4,122,653 + +0.1 4,122,654 - +0.8 4,122,654 - +0.5 4,122,823 + CA264_17720 0.17 +0.4 4,122,824 - CA264_17720 0.17 +0.4 4,122,875 + CA264_17720 0.21 +0.2 4,122,911 + CA264_17720 0.24 -0.2 4,122,911 + CA264_17720 0.24 -0.6 4,122,932 + CA264_17720 0.26 +1.2 4,122,955 + CA264_17720 0.28 -0.5 4,122,956 - CA264_17720 0.28 +0.8 4,122,957 + CA264_17720 0.28 +0.5 4,122,981 - CA264_17720 0.30 -0.4 4,123,023 + CA264_17720 0.33 +0.2 4,123,045 - CA264_17720 0.35 -0.6 4,123,071 - CA264_17720 0.37 +0.2 4,123,080 - CA264_17720 0.38 -0.3 4,123,089 - CA264_17720 0.39 +0.4 4,123,182 - CA264_17720 0.47 +1.1 4,123,182 - CA264_17720 0.47 +1.0 4,123,182 - CA264_17720 0.47 +1.3 4,123,193 - CA264_17720 0.47 +1.7 4,123,197 + CA264_17720 0.48 -0.5 4,123,197 + CA264_17720 0.48 -0.4 4,123,388 - CA264_17720 0.64 +1.0 4,123,443 - CA264_17720 0.68 +0.6 4,123,443 - CA264_17720 0.68 +0.3 4,123,490 - CA264_17720 0.72 +0.0 4,123,555 + CA264_17720 0.78 +0.0 4,123,556 - CA264_17720 0.78 +0.4 4,123,585 + CA264_17720 0.80 -0.5 4,123,612 + CA264_17720 0.82 +1.4 4,123,658 - CA264_17720 0.86 -0.4 4,123,658 - CA264_17720 0.86 +0.3 4,123,658 - CA264_17720 0.86 -1.2 4,123,670 + CA264_17720 0.87 -0.6 4,123,670 + CA264_17720 0.87 -0.2 4,123,704 - +0.3 4,123,765 + -1.4 4,123,804 + -0.1 4,123,810 - +0.4 4,123,820 - +0.2 4,123,821 + +0.2 4,123,822 - +1.0 4,123,822 - -0.4 4,123,822 - +1.0 4,123,960 - -1.3 4,123,990 + +0.4 4,124,071 + CA264_17725 0.13 -0.6 4,124,075 + CA264_17725 0.14 -1.5 4,124,080 + CA264_17725 0.14 -0.8 4,124,080 + CA264_17725 0.14 -1.8 4,124,124 - CA264_17725 0.20 -1.3 4,124,192 - CA264_17725 0.29 -1.0 4,124,244 + CA264_17725 0.36 +1.1 4,124,245 - CA264_17725 0.36 -1.9 4,124,301 + CA264_17725 0.44 -1.0 4,124,337 + CA264_17725 0.49 -1.3 4,124,340 + CA264_17725 0.49 -1.4 4,124,341 - CA264_17725 0.49 -1.6 4,124,397 - CA264_17725 0.57 -0.1 4,124,397 - CA264_17725 0.57 -1.1 4,124,397 - CA264_17725 0.57 -0.8 4,124,405 + CA264_17725 0.58 +0.3 4,124,406 - CA264_17725 0.58 -0.3 4,124,543 + CA264_17725 0.76 -0.8 4,124,544 - CA264_17725 0.76 -0.4 4,124,634 - CA264_17725 0.88 +0.4 4,124,671 + +0.8 4,124,672 - -0.7 4,124,673 + -0.9 4,124,674 - +0.1 4,124,702 + +0.1 4,124,702 + +0.5 4,124,703 - +0.1 4,124,708 - +1.2 4,124,734 - +1.0 4,124,739 + +0.3 4,124,740 - +0.4 4,124,740 - +2.3 4,124,740 - +0.5 4,124,740 - +1.4 4,124,743 + -1.2 4,124,744 - +0.3 4,124,751 + -0.1 4,124,751 + -0.1 4,124,778 + +0.5 4,124,786 - +0.9 4,124,808 + +0.2
Or see this region's nucleotide sequence