Experiment: m.b. copper (II) chloride 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_15415 and CA264_15420 are separated by 120 nucleotides CA264_15420 and CA264_15425 are separated by 41 nucleotides CA264_15425 and CA264_15430 are separated by 438 nucleotides
CA264_15415: CA264_15415 - 1-aminocyclopropane-1-carboxylate deaminase, at 3,610,668 to 3,611,573
_15415
CA264_15420: CA264_15420 - hypothetical protein, at 3,611,694 to 3,614,132
_15420
CA264_15425: CA264_15425 - DUF4834 domain-containing protein, at 3,614,174 to 3,614,452
_15425
CA264_15430: CA264_15430 - carbamoyl phosphate synthase large subunit, at 3,614,891 to 3,617,704
_15430
Position (kb)
3611
3612
3613
3614
3615 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3610.789 kb on + strand, within CA264_15415 at 3610.789 kb on + strand, within CA264_15415 at 3610.808 kb on - strand, within CA264_15415 at 3610.876 kb on - strand, within CA264_15415 at 3610.962 kb on + strand, within CA264_15415 at 3611.168 kb on - strand, within CA264_15415 at 3611.341 kb on + strand, within CA264_15415 at 3611.342 kb on - strand, within CA264_15415 at 3611.342 kb on - strand, within CA264_15415 at 3611.409 kb on - strand, within CA264_15415 at 3611.409 kb on - strand, within CA264_15415 at 3611.443 kb on + strand, within CA264_15415 at 3611.613 kb on + strand at 3611.615 kb on + strand at 3611.620 kb on + strand at 3611.621 kb on - strand at 3611.743 kb on + strand at 3614.132 kb on + strand at 3614.132 kb on + strand at 3614.132 kb on + strand at 3614.166 kb on + strand at 3614.181 kb on - strand at 3614.200 kb on - strand at 3614.328 kb on + strand, within CA264_15425 at 3614.384 kb on + strand, within CA264_15425 at 3614.404 kb on + strand, within CA264_15425 at 3614.435 kb on - strand at 3614.438 kb on + strand at 3614.480 kb on + strand at 3614.484 kb on + strand at 3614.484 kb on + strand at 3614.484 kb on + strand at 3614.486 kb on + strand at 3614.487 kb on - strand at 3614.515 kb on - strand at 3614.570 kb on + strand at 3614.577 kb on + strand at 3614.577 kb on + strand at 3614.652 kb on - strand at 3614.664 kb on + strand at 3614.669 kb on + strand at 3614.670 kb on - strand at 3614.670 kb on - strand at 3614.683 kb on + strand at 3614.683 kb on + strand at 3614.683 kb on + strand at 3614.683 kb on + strand at 3614.684 kb on - strand at 3614.684 kb on - strand at 3614.685 kb on + strand at 3614.692 kb on + strand at 3614.837 kb on + strand at 3614.838 kb on - strand at 3614.878 kb on - strand at 3614.883 kb on + strand at 3614.885 kb on + strand at 3614.886 kb on - strand at 3614.886 kb on - strand at 3614.886 kb on - strand at 3614.892 kb on + strand at 3614.893 kb on - strand at 3614.938 kb on - strand at 3614.959 kb on + strand at 3615.031 kb on - strand at 3615.067 kb on + strand at 3615.067 kb on + strand at 3615.067 kb on + strand at 3615.067 kb on + strand at 3615.068 kb on - strand at 3615.082 kb on + strand at 3615.082 kb on + strand at 3615.083 kb on - strand at 3615.127 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.16 mM remove 3,610,789 + CA264_15415 0.13 +0.4 3,610,789 + CA264_15415 0.13 +0.6 3,610,808 - CA264_15415 0.15 -0.3 3,610,876 - CA264_15415 0.23 +0.4 3,610,962 + CA264_15415 0.32 -0.1 3,611,168 - CA264_15415 0.55 +0.1 3,611,341 + CA264_15415 0.74 +0.3 3,611,342 - CA264_15415 0.74 +0.8 3,611,342 - CA264_15415 0.74 +0.0 3,611,409 - CA264_15415 0.82 +0.1 3,611,409 - CA264_15415 0.82 +0.2 3,611,443 + CA264_15415 0.86 +0.3 3,611,613 + -0.9 3,611,615 + -0.9 3,611,620 + +0.4 3,611,621 - -2.2 3,611,743 + -0.3 3,614,132 + -0.2 3,614,132 + -0.6 3,614,132 + -0.7 3,614,166 + -1.6 3,614,181 - -0.2 3,614,200 - +0.5 3,614,328 + CA264_15425 0.55 -0.4 3,614,384 + CA264_15425 0.75 +0.3 3,614,404 + CA264_15425 0.82 -2.1 3,614,435 - -1.1 3,614,438 + -0.7 3,614,480 + +1.0 3,614,484 + +0.2 3,614,484 + +1.1 3,614,484 + +0.5 3,614,486 + +0.8 3,614,487 - -1.0 3,614,515 - -1.7 3,614,570 + +0.2 3,614,577 + +0.9 3,614,577 + +0.3 3,614,652 - -1.5 3,614,664 + -0.7 3,614,669 + -0.1 3,614,670 - -0.9 3,614,670 - -0.9 3,614,683 + +1.0 3,614,683 + +0.8 3,614,683 + -0.1 3,614,683 + +0.3 3,614,684 - -3.1 3,614,684 - -0.5 3,614,685 + +0.1 3,614,692 + +0.7 3,614,837 + -0.3 3,614,838 - -1.0 3,614,878 - -0.8 3,614,883 + -0.3 3,614,885 + -1.4 3,614,886 - -0.7 3,614,886 - -0.6 3,614,886 - +0.2 3,614,892 + +0.8 3,614,893 - -0.9 3,614,938 - -0.8 3,614,959 + +0.4 3,615,031 - +0.2 3,615,067 + +1.1 3,615,067 + +0.7 3,615,067 + -0.3 3,615,067 + -1.6 3,615,068 - -0.9 3,615,082 + +0.2 3,615,082 + -0.1 3,615,083 - -0.3 3,615,127 - +0.7
Or see this region's nucleotide sequence