Experiment: m.b. copper (II) chloride 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_14575 and CA264_14580 are separated by 349 nucleotides CA264_14580 and CA264_14585 are separated by 98 nucleotides CA264_14585 and CA264_14590 are separated by 131 nucleotides
CA264_14575: CA264_14575 - protease, at 3,426,997 to 3,427,800
_14575
CA264_14580: CA264_14580 - hypothetical protein, at 3,428,150 to 3,428,389
_14580
CA264_14585: CA264_14585 - YicC family protein, at 3,428,488 to 3,429,369
_14585
CA264_14590: CA264_14590 - phosphoribosylformylglycinamidine synthase I, at 3,429,501 to 3,430,193
_14590
Position (kb)
3428
3429
3430 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3427.506 kb on + strand, within CA264_14575 at 3427.516 kb on + strand, within CA264_14575 at 3427.552 kb on + strand, within CA264_14575 at 3427.605 kb on + strand, within CA264_14575 at 3427.605 kb on + strand, within CA264_14575 at 3427.605 kb on + strand, within CA264_14575 at 3427.606 kb on - strand, within CA264_14575 at 3427.638 kb on + strand, within CA264_14575 at 3427.659 kb on + strand, within CA264_14575 at 3427.826 kb on + strand at 3427.827 kb on - strand at 3427.827 kb on - strand at 3427.827 kb on - strand at 3427.841 kb on + strand at 3427.842 kb on - strand at 3427.843 kb on + strand at 3427.862 kb on + strand at 3427.862 kb on + strand at 3427.862 kb on + strand at 3427.863 kb on - strand at 3427.863 kb on - strand at 3427.868 kb on + strand at 3427.869 kb on - strand at 3427.869 kb on - strand at 3427.987 kb on - strand at 3428.051 kb on + strand at 3428.145 kb on - strand at 3428.187 kb on + strand, within CA264_14580 at 3428.187 kb on + strand, within CA264_14580 at 3428.188 kb on - strand, within CA264_14580 at 3428.282 kb on - strand, within CA264_14580 at 3428.393 kb on + strand at 3428.416 kb on + strand at 3428.417 kb on - strand at 3428.473 kb on - strand at 3428.480 kb on - strand at 3428.483 kb on + strand at 3428.484 kb on - strand at 3428.489 kb on + strand at 3428.490 kb on - strand at 3428.515 kb on + strand at 3428.620 kb on - strand, within CA264_14585 at 3428.654 kb on + strand, within CA264_14585 at 3428.673 kb on - strand, within CA264_14585 at 3428.728 kb on - strand, within CA264_14585 at 3428.729 kb on + strand, within CA264_14585 at 3428.730 kb on - strand, within CA264_14585 at 3428.730 kb on - strand, within CA264_14585 at 3428.730 kb on - strand, within CA264_14585 at 3428.732 kb on + strand, within CA264_14585 at 3428.732 kb on + strand, within CA264_14585 at 3428.733 kb on - strand, within CA264_14585 at 3428.733 kb on - strand, within CA264_14585 at 3429.102 kb on + strand, within CA264_14585 at 3429.103 kb on - strand, within CA264_14585 at 3429.103 kb on - strand, within CA264_14585 at 3429.104 kb on + strand, within CA264_14585 at 3429.105 kb on - strand, within CA264_14585 at 3429.105 kb on - strand, within CA264_14585 at 3429.105 kb on - strand, within CA264_14585 at 3429.108 kb on - strand, within CA264_14585 at 3429.108 kb on - strand, within CA264_14585 at 3429.108 kb on - strand, within CA264_14585 at 3429.130 kb on + strand, within CA264_14585 at 3429.230 kb on + strand, within CA264_14585 at 3429.231 kb on - strand, within CA264_14585 at 3429.258 kb on + strand, within CA264_14585 at 3429.369 kb on + strand at 3429.370 kb on - strand at 3429.370 kb on - strand at 3429.466 kb on - strand at 3429.469 kb on + strand at 3429.481 kb on - strand at 3429.486 kb on - strand at 3429.514 kb on + strand at 3429.563 kb on + strand at 3429.617 kb on - strand, within CA264_14590 at 3429.632 kb on + strand, within CA264_14590 at 3429.634 kb on + strand, within CA264_14590 at 3429.635 kb on - strand, within CA264_14590 at 3429.666 kb on + strand, within CA264_14590 at 3429.667 kb on - strand, within CA264_14590 at 3429.701 kb on + strand, within CA264_14590 at 3429.701 kb on + strand, within CA264_14590 at 3429.702 kb on - strand, within CA264_14590 at 3429.704 kb on + strand, within CA264_14590 at 3429.704 kb on + strand, within CA264_14590 at 3429.704 kb on + strand, within CA264_14590 at 3429.846 kb on + strand, within CA264_14590 at 3429.846 kb on + strand, within CA264_14590 at 3429.846 kb on + strand, within CA264_14590 at 3429.847 kb on - strand, within CA264_14590 at 3429.847 kb on - strand, within CA264_14590 at 3429.906 kb on + strand, within CA264_14590 at 3429.906 kb on + strand, within CA264_14590 at 3430.000 kb on - strand, within CA264_14590 at 3430.170 kb on - strand at 3430.181 kb on - strand at 3430.201 kb on + strand at 3430.220 kb on + strand at 3430.248 kb on - strand at 3430.289 kb on + strand at 3430.290 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.16 mM remove 3,427,506 + CA264_14575 0.63 -0.8 3,427,516 + CA264_14575 0.65 +1.1 3,427,552 + CA264_14575 0.69 +0.0 3,427,605 + CA264_14575 0.76 -0.2 3,427,605 + CA264_14575 0.76 -0.7 3,427,605 + CA264_14575 0.76 +1.2 3,427,606 - CA264_14575 0.76 -1.2 3,427,638 + CA264_14575 0.80 +0.2 3,427,659 + CA264_14575 0.82 +0.9 3,427,826 + +0.0 3,427,827 - -0.8 3,427,827 - -0.5 3,427,827 - +0.9 3,427,841 + -1.2 3,427,842 - +1.5 3,427,843 + +0.5 3,427,862 + -0.1 3,427,862 + -0.6 3,427,862 + -0.2 3,427,863 - -0.7 3,427,863 - +0.3 3,427,868 + +0.2 3,427,869 - -0.6 3,427,869 - -0.9 3,427,987 - -0.2 3,428,051 + -0.3 3,428,145 - -0.5 3,428,187 + CA264_14580 0.15 +0.2 3,428,187 + CA264_14580 0.15 -0.4 3,428,188 - CA264_14580 0.16 -2.5 3,428,282 - CA264_14580 0.55 -0.4 3,428,393 + -1.4 3,428,416 + +0.5 3,428,417 - -0.6 3,428,473 - -2.3 3,428,480 - -1.1 3,428,483 + -0.1 3,428,484 - -2.5 3,428,489 + -2.5 3,428,490 - -0.3 3,428,515 + +0.7 3,428,620 - CA264_14585 0.15 -0.5 3,428,654 + CA264_14585 0.19 +0.9 3,428,673 - CA264_14585 0.21 -0.4 3,428,728 - CA264_14585 0.27 -0.5 3,428,729 + CA264_14585 0.27 -0.1 3,428,730 - CA264_14585 0.27 -0.7 3,428,730 - CA264_14585 0.27 +0.1 3,428,730 - CA264_14585 0.27 +0.1 3,428,732 + CA264_14585 0.28 -0.4 3,428,732 + CA264_14585 0.28 +0.0 3,428,733 - CA264_14585 0.28 -0.5 3,428,733 - CA264_14585 0.28 -1.5 3,429,102 + CA264_14585 0.70 -0.1 3,429,103 - CA264_14585 0.70 -0.8 3,429,103 - CA264_14585 0.70 -0.2 3,429,104 + CA264_14585 0.70 -0.9 3,429,105 - CA264_14585 0.70 -1.0 3,429,105 - CA264_14585 0.70 -0.2 3,429,105 - CA264_14585 0.70 +0.6 3,429,108 - CA264_14585 0.70 -0.5 3,429,108 - CA264_14585 0.70 -0.5 3,429,108 - CA264_14585 0.70 -0.7 3,429,130 + CA264_14585 0.73 +0.3 3,429,230 + CA264_14585 0.84 -0.0 3,429,231 - CA264_14585 0.84 +0.7 3,429,258 + CA264_14585 0.87 -0.5 3,429,369 + +1.9 3,429,370 - -1.7 3,429,370 - -0.5 3,429,466 - -0.2 3,429,469 + -1.5 3,429,481 - -0.2 3,429,486 - -0.1 3,429,514 + +0.7 3,429,563 + -0.6 3,429,617 - CA264_14590 0.17 -0.5 3,429,632 + CA264_14590 0.19 -0.6 3,429,634 + CA264_14590 0.19 -0.3 3,429,635 - CA264_14590 0.19 -0.4 3,429,666 + CA264_14590 0.24 -0.4 3,429,667 - CA264_14590 0.24 +0.5 3,429,701 + CA264_14590 0.29 -2.2 3,429,701 + CA264_14590 0.29 +1.2 3,429,702 - CA264_14590 0.29 +2.5 3,429,704 + CA264_14590 0.29 -0.1 3,429,704 + CA264_14590 0.29 +0.9 3,429,704 + CA264_14590 0.29 +0.4 3,429,846 + CA264_14590 0.50 +2.7 3,429,846 + CA264_14590 0.50 +0.4 3,429,846 + CA264_14590 0.50 -0.5 3,429,847 - CA264_14590 0.50 +0.4 3,429,847 - CA264_14590 0.50 +0.4 3,429,906 + CA264_14590 0.58 -0.5 3,429,906 + CA264_14590 0.58 -1.8 3,430,000 - CA264_14590 0.72 +0.2 3,430,170 - +0.9 3,430,181 - -0.0 3,430,201 + -0.3 3,430,220 + -1.5 3,430,248 - -0.3 3,430,289 + -1.6 3,430,290 - +0.0
Or see this region's nucleotide sequence