Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_12040

Experiment: m.b. copper (II) chloride 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_12035 and CA264_12040 are separated by 48 nucleotidesCA264_12040 and CA264_12045 are separated by 21 nucleotidesCA264_12045 and CA264_12050 are separated by 8 nucleotides CA264_12035: CA264_12035 - SLC13 family permease, at 2,800,470 to 2,802,227 _12035 CA264_12040: CA264_12040 - hypothetical protein, at 2,802,276 to 2,802,902 _12040 CA264_12045: CA264_12045 - hypothetical protein, at 2,802,924 to 2,803,259 _12045 CA264_12050: CA264_12050 - hypothetical protein, at 2,803,268 to 2,803,696 _12050 Position (kb) 2802 2803Strain fitness (log2 ratio) -2 -1 0 1 2at 2801.311 kb on + strand, within CA264_12035at 2801.336 kb on + strand, within CA264_12035at 2801.480 kb on + strand, within CA264_12035at 2801.481 kb on - strand, within CA264_12035at 2801.673 kb on - strand, within CA264_12035at 2801.677 kb on + strand, within CA264_12035at 2801.781 kb on + strand, within CA264_12035at 2801.782 kb on - strand, within CA264_12035at 2801.990 kb on - strand, within CA264_12035at 2802.060 kb on - strandat 2802.132 kb on + strandat 2802.153 kb on - strandat 2802.284 kb on + strandat 2802.284 kb on + strandat 2802.285 kb on - strandat 2802.286 kb on + strandat 2802.286 kb on + strandat 2802.286 kb on + strandat 2802.287 kb on - strandat 2802.287 kb on - strandat 2802.287 kb on - strandat 2802.421 kb on + strand, within CA264_12040at 2802.443 kb on - strand, within CA264_12040at 2802.454 kb on + strand, within CA264_12040at 2802.481 kb on + strand, within CA264_12040at 2802.622 kb on + strand, within CA264_12040at 2802.678 kb on + strand, within CA264_12040at 2802.678 kb on + strand, within CA264_12040at 2802.679 kb on - strand, within CA264_12040at 2802.689 kb on - strand, within CA264_12040at 2802.713 kb on + strand, within CA264_12040at 2802.731 kb on + strand, within CA264_12040at 2802.731 kb on + strand, within CA264_12040at 2802.741 kb on + strand, within CA264_12040at 2802.744 kb on + strand, within CA264_12040at 2802.745 kb on - strand, within CA264_12040at 2802.753 kb on - strand, within CA264_12040at 2802.856 kb on - strandat 2802.886 kb on - strandat 2802.978 kb on + strand, within CA264_12045at 2802.978 kb on + strand, within CA264_12045at 2802.978 kb on + strand, within CA264_12045at 2802.979 kb on - strand, within CA264_12045at 2802.984 kb on - strand, within CA264_12045at 2803.035 kb on - strand, within CA264_12045at 2803.057 kb on + strand, within CA264_12045at 2803.057 kb on + strand, within CA264_12045at 2803.057 kb on + strand, within CA264_12045at 2803.057 kb on + strand, within CA264_12045at 2803.057 kb on + strand, within CA264_12045at 2803.058 kb on - strand, within CA264_12045at 2803.074 kb on + strand, within CA264_12045at 2803.074 kb on + strand, within CA264_12045at 2803.074 kb on + strand, within CA264_12045at 2803.086 kb on - strand, within CA264_12045at 2803.086 kb on - strand, within CA264_12045at 2803.121 kb on + strand, within CA264_12045at 2803.145 kb on - strand, within CA264_12045at 2803.145 kb on - strand, within CA264_12045at 2803.217 kb on - strand, within CA264_12045at 2803.237 kb on + strandat 2803.237 kb on + strandat 2803.237 kb on + strandat 2803.238 kb on - strandat 2803.240 kb on + strandat 2803.269 kb on + strandat 2803.269 kb on + strandat 2803.270 kb on - strandat 2803.270 kb on - strandat 2803.300 kb on + strandat 2803.400 kb on - strand, within CA264_12050at 2803.465 kb on - strand, within CA264_12050at 2803.576 kb on + strand, within CA264_12050at 2803.580 kb on + strand, within CA264_12050at 2803.580 kb on + strand, within CA264_12050at 2803.580 kb on + strandat 2803.585 kb on + strand, within CA264_12050at 2803.607 kb on + strand, within CA264_12050at 2803.696 kb on + strandat 2803.696 kb on + strandat 2803.696 kb on + strandat 2803.696 kb on + strandat 2803.697 kb on - strandat 2803.710 kb on - strandat 2803.710 kb on - strandat 2803.845 kb on + strandat 2803.847 kb on + strandat 2803.847 kb on + strandat 2803.848 kb on - strandat 2803.848 kb on - strandat 2803.852 kb on + strandat 2803.852 kb on + strandat 2803.853 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.16 mM
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2,801,311 + CA264_12035 0.48 +1.8
2,801,336 + CA264_12035 0.49 -0.6
2,801,480 + CA264_12035 0.57 -0.2
2,801,481 - CA264_12035 0.58 -0.7
2,801,673 - CA264_12035 0.68 -0.9
2,801,677 + CA264_12035 0.69 +0.6
2,801,781 + CA264_12035 0.75 -0.4
2,801,782 - CA264_12035 0.75 -0.3
2,801,990 - CA264_12035 0.86 -1.8
2,802,060 - -0.5
2,802,132 + +0.5
2,802,153 - -0.8
2,802,284 + -0.3
2,802,284 + -0.1
2,802,285 - -0.2
2,802,286 + +0.4
2,802,286 + +2.3
2,802,286 + +1.1
2,802,287 - -0.8
2,802,287 - -0.9
2,802,287 - +1.1
2,802,421 + CA264_12040 0.23 +0.2
2,802,443 - CA264_12040 0.27 -0.3
2,802,454 + CA264_12040 0.28 +0.3
2,802,481 + CA264_12040 0.33 -0.6
2,802,622 + CA264_12040 0.55 -0.7
2,802,678 + CA264_12040 0.64 +0.8
2,802,678 + CA264_12040 0.64 +0.5
2,802,679 - CA264_12040 0.64 -2.0
2,802,689 - CA264_12040 0.66 +1.3
2,802,713 + CA264_12040 0.70 -0.3
2,802,731 + CA264_12040 0.73 +0.6
2,802,731 + CA264_12040 0.73 +0.9
2,802,741 + CA264_12040 0.74 +0.1
2,802,744 + CA264_12040 0.75 -0.4
2,802,745 - CA264_12040 0.75 +1.4
2,802,753 - CA264_12040 0.76 -0.8
2,802,856 - -0.2
2,802,886 - +0.6
2,802,978 + CA264_12045 0.16 -0.5
2,802,978 + CA264_12045 0.16 +0.8
2,802,978 + CA264_12045 0.16 -0.4
2,802,979 - CA264_12045 0.16 +2.3
2,802,984 - CA264_12045 0.18 +0.0
2,803,035 - CA264_12045 0.33 -0.6
2,803,057 + CA264_12045 0.40 -0.0
2,803,057 + CA264_12045 0.40 +0.1
2,803,057 + CA264_12045 0.40 -0.2
2,803,057 + CA264_12045 0.40 -1.1
2,803,057 + CA264_12045 0.40 +0.7
2,803,058 - CA264_12045 0.40 -0.6
2,803,074 + CA264_12045 0.45 +1.6
2,803,074 + CA264_12045 0.45 +0.5
2,803,074 + CA264_12045 0.45 +1.3
2,803,086 - CA264_12045 0.48 -0.7
2,803,086 - CA264_12045 0.48 +1.2
2,803,121 + CA264_12045 0.59 +0.1
2,803,145 - CA264_12045 0.66 +1.3
2,803,145 - CA264_12045 0.66 -0.2
2,803,217 - CA264_12045 0.87 +0.0
2,803,237 + +0.4
2,803,237 + +0.5
2,803,237 + +1.2
2,803,238 - -0.7
2,803,240 + +0.3
2,803,269 + +0.5
2,803,269 + +0.6
2,803,270 - +0.1
2,803,270 - +0.1
2,803,300 + -0.7
2,803,400 - CA264_12050 0.31 +0.1
2,803,465 - CA264_12050 0.46 -0.2
2,803,576 + CA264_12050 0.72 -0.5
2,803,580 + CA264_12050 0.73 -0.5
2,803,580 + CA264_12050 0.73 -0.4
2,803,580 + +0.2
2,803,585 + CA264_12050 0.74 +0.6
2,803,607 + CA264_12050 0.79 -0.5
2,803,696 + +0.7
2,803,696 + +0.8
2,803,696 + -0.3
2,803,696 + -0.1
2,803,697 - +0.1
2,803,710 - +0.2
2,803,710 - -1.3
2,803,845 + +2.1
2,803,847 + +1.0
2,803,847 + +0.1
2,803,848 - +0.2
2,803,848 - -1.5
2,803,852 + -0.2
2,803,852 + +0.2
2,803,853 - +0.0

Or see this region's nucleotide sequence