Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_09150

Experiment: m.b. copper (II) chloride 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_09145 and CA264_09150 are separated by 126 nucleotidesCA264_09150 and CA264_09155 are separated by 188 nucleotides CA264_09145: CA264_09145 - ammonia channel protein, at 2,143,987 to 2,145,348 _09145 CA264_09150: CA264_09150 - Crp/Fnr family transcriptional regulator, at 2,145,475 to 2,146,122 _09150 CA264_09155: CA264_09155 - anion permease, at 2,146,311 to 2,147,111 _09155 Position (kb) 2145 2146 2147Strain fitness (log2 ratio) -2 -1 0 1 2at 2144.506 kb on + strand, within CA264_09145at 2144.558 kb on + strand, within CA264_09145at 2144.558 kb on + strand, within CA264_09145at 2144.559 kb on - strand, within CA264_09145at 2144.595 kb on + strand, within CA264_09145at 2144.595 kb on + strand, within CA264_09145at 2144.595 kb on + strand, within CA264_09145at 2144.596 kb on - strand, within CA264_09145at 2144.596 kb on - strand, within CA264_09145at 2144.596 kb on - strand, within CA264_09145at 2144.596 kb on - strand, within CA264_09145at 2144.596 kb on - strand, within CA264_09145at 2144.596 kb on - strand, within CA264_09145at 2144.596 kb on - strand, within CA264_09145at 2144.596 kb on - strand, within CA264_09145at 2144.654 kb on + strand, within CA264_09145at 2144.655 kb on - strand, within CA264_09145at 2144.680 kb on + strand, within CA264_09145at 2144.684 kb on + strand, within CA264_09145at 2144.685 kb on - strand, within CA264_09145at 2144.685 kb on - strand, within CA264_09145at 2144.751 kb on + strand, within CA264_09145at 2144.751 kb on + strand, within CA264_09145at 2144.863 kb on - strand, within CA264_09145at 2144.868 kb on + strand, within CA264_09145at 2144.869 kb on - strand, within CA264_09145at 2144.979 kb on - strand, within CA264_09145at 2144.979 kb on - strand, within CA264_09145at 2144.979 kb on - strand, within CA264_09145at 2145.071 kb on + strand, within CA264_09145at 2145.071 kb on + strand, within CA264_09145at 2145.134 kb on - strand, within CA264_09145at 2145.134 kb on - strand, within CA264_09145at 2145.341 kb on - strandat 2145.341 kb on - strandat 2145.442 kb on - strandat 2145.689 kb on - strand, within CA264_09150at 2145.691 kb on + strand, within CA264_09150at 2145.691 kb on + strand, within CA264_09150at 2145.691 kb on + strand, within CA264_09150at 2145.691 kb on + strand, within CA264_09150at 2145.692 kb on - strand, within CA264_09150at 2145.833 kb on - strand, within CA264_09150at 2145.835 kb on - strand, within CA264_09150at 2145.916 kb on - strand, within CA264_09150at 2146.100 kb on + strandat 2146.100 kb on + strandat 2146.100 kb on + strandat 2146.101 kb on - strandat 2146.120 kb on + strandat 2146.120 kb on + strandat 2146.120 kb on + strandat 2146.120 kb on + strandat 2146.121 kb on - strandat 2146.121 kb on - strandat 2146.172 kb on + strandat 2146.172 kb on + strandat 2146.173 kb on - strandat 2146.173 kb on - strandat 2146.176 kb on + strandat 2146.182 kb on + strandat 2146.183 kb on - strandat 2146.203 kb on - strandat 2146.203 kb on - strandat 2146.253 kb on - strandat 2146.260 kb on - strandat 2146.274 kb on - strandat 2146.280 kb on - strandat 2146.284 kb on + strandat 2146.383 kb on - strandat 2146.384 kb on + strandat 2146.384 kb on + strandat 2146.385 kb on - strandat 2146.385 kb on - strandat 2146.385 kb on - strandat 2146.389 kb on - strandat 2146.393 kb on + strand, within CA264_09155at 2146.444 kb on - strand, within CA264_09155at 2146.575 kb on + strand, within CA264_09155at 2146.579 kb on + strand, within CA264_09155at 2146.580 kb on - strand, within CA264_09155at 2146.608 kb on - strand, within CA264_09155at 2146.788 kb on - strand, within CA264_09155at 2146.798 kb on + strand, within CA264_09155at 2146.894 kb on + strand, within CA264_09155at 2146.921 kb on + strand, within CA264_09155at 2146.938 kb on + strand, within CA264_09155at 2146.938 kb on + strand, within CA264_09155at 2146.939 kb on - strand, within CA264_09155at 2146.939 kb on - strand, within CA264_09155at 2146.943 kb on + strand, within CA264_09155at 2147.080 kb on - strandat 2147.080 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.16 mM
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2,144,506 + CA264_09145 0.38 +1.4
2,144,558 + CA264_09145 0.42 +0.1
2,144,558 + CA264_09145 0.42 +0.3
2,144,559 - CA264_09145 0.42 -0.2
2,144,595 + CA264_09145 0.45 +0.7
2,144,595 + CA264_09145 0.45 +0.6
2,144,595 + CA264_09145 0.45 +0.5
2,144,596 - CA264_09145 0.45 +1.2
2,144,596 - CA264_09145 0.45 +0.5
2,144,596 - CA264_09145 0.45 -2.3
2,144,596 - CA264_09145 0.45 +0.8
2,144,596 - CA264_09145 0.45 -0.7
2,144,596 - CA264_09145 0.45 +0.8
2,144,596 - CA264_09145 0.45 +0.2
2,144,596 - CA264_09145 0.45 +2.0
2,144,654 + CA264_09145 0.49 -0.2
2,144,655 - CA264_09145 0.49 +1.2
2,144,680 + CA264_09145 0.51 -0.1
2,144,684 + CA264_09145 0.51 -2.4
2,144,685 - CA264_09145 0.51 +1.2
2,144,685 - CA264_09145 0.51 +0.0
2,144,751 + CA264_09145 0.56 +0.0
2,144,751 + CA264_09145 0.56 +0.9
2,144,863 - CA264_09145 0.64 -1.4
2,144,868 + CA264_09145 0.65 +1.0
2,144,869 - CA264_09145 0.65 -0.3
2,144,979 - CA264_09145 0.73 +0.6
2,144,979 - CA264_09145 0.73 +0.9
2,144,979 - CA264_09145 0.73 +0.6
2,145,071 + CA264_09145 0.80 +0.1
2,145,071 + CA264_09145 0.80 +0.4
2,145,134 - CA264_09145 0.84 -0.2
2,145,134 - CA264_09145 0.84 +0.6
2,145,341 - +0.5
2,145,341 - +1.3
2,145,442 - +0.7
2,145,689 - CA264_09150 0.33 -0.2
2,145,691 + CA264_09150 0.33 +0.3
2,145,691 + CA264_09150 0.33 +0.9
2,145,691 + CA264_09150 0.33 +0.3
2,145,691 + CA264_09150 0.33 +0.7
2,145,692 - CA264_09150 0.33 -0.2
2,145,833 - CA264_09150 0.55 -0.3
2,145,835 - CA264_09150 0.56 +1.3
2,145,916 - CA264_09150 0.68 +0.4
2,146,100 + +0.4
2,146,100 + +0.5
2,146,100 + -0.3
2,146,101 - +1.2
2,146,120 + +0.9
2,146,120 + +0.1
2,146,120 + -0.3
2,146,120 + +1.6
2,146,121 - -0.0
2,146,121 - +0.5
2,146,172 + -1.9
2,146,172 + +1.0
2,146,173 - -0.2
2,146,173 - +0.5
2,146,176 + +1.7
2,146,182 + +0.6
2,146,183 - +0.9
2,146,203 - -0.3
2,146,203 - +0.2
2,146,253 - -1.4
2,146,260 - -0.2
2,146,274 - +2.1
2,146,280 - +0.6
2,146,284 + +0.4
2,146,383 - -0.1
2,146,384 + -0.3
2,146,384 + +1.7
2,146,385 - -2.3
2,146,385 - -1.6
2,146,385 - -1.3
2,146,389 - -0.6
2,146,393 + CA264_09155 0.10 -0.4
2,146,444 - CA264_09155 0.17 -0.1
2,146,575 + CA264_09155 0.33 +0.6
2,146,579 + CA264_09155 0.33 -0.4
2,146,580 - CA264_09155 0.34 +0.3
2,146,608 - CA264_09155 0.37 -0.4
2,146,788 - CA264_09155 0.60 -1.9
2,146,798 + CA264_09155 0.61 +0.8
2,146,894 + CA264_09155 0.73 -2.4
2,146,921 + CA264_09155 0.76 -0.2
2,146,938 + CA264_09155 0.78 +0.2
2,146,938 + CA264_09155 0.78 -0.8
2,146,939 - CA264_09155 0.78 -0.5
2,146,939 - CA264_09155 0.78 -0.1
2,146,943 + CA264_09155 0.79 -1.6
2,147,080 - -1.0
2,147,080 - +2.0

Or see this region's nucleotide sequence