Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_07045

Experiment: m.b. copper (II) chloride 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_07040 and CA264_07045 are separated by 243 nucleotidesCA264_07045 and CA264_07050 are separated by 759 nucleotides CA264_07040: CA264_07040 - 8-amino-7-oxononanoate synthase, at 1,622,821 to 1,624,062 _07040 CA264_07045: CA264_07045 - TetR family transcriptional regulator, at 1,624,306 to 1,624,896 _07045 CA264_07050: CA264_07050 - serine acetyltransferase, at 1,625,656 to 1,626,192 _07050 Position (kb) 1624 1625Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1623.327 kb on + strand, within CA264_07040at 1623.422 kb on - strand, within CA264_07040at 1623.422 kb on - strand, within CA264_07040at 1623.422 kb on - strand, within CA264_07040at 1623.422 kb on - strand, within CA264_07040at 1623.492 kb on + strand, within CA264_07040at 1623.571 kb on - strand, within CA264_07040at 1623.584 kb on + strand, within CA264_07040at 1623.584 kb on + strand, within CA264_07040at 1623.628 kb on - strand, within CA264_07040at 1623.657 kb on + strand, within CA264_07040at 1623.658 kb on - strand, within CA264_07040at 1623.659 kb on + strand, within CA264_07040at 1623.660 kb on - strand, within CA264_07040at 1623.687 kb on + strand, within CA264_07040at 1623.847 kb on - strand, within CA264_07040at 1623.865 kb on - strand, within CA264_07040at 1623.877 kb on - strand, within CA264_07040at 1623.877 kb on - strand, within CA264_07040at 1623.877 kb on - strand, within CA264_07040at 1623.877 kb on - strand, within CA264_07040at 1624.207 kb on + strandat 1624.210 kb on + strandat 1624.249 kb on + strandat 1624.257 kb on + strandat 1624.258 kb on - strandat 1624.330 kb on + strandat 1624.332 kb on + strandat 1624.457 kb on + strand, within CA264_07045at 1624.458 kb on - strand, within CA264_07045at 1624.458 kb on - strand, within CA264_07045at 1624.548 kb on + strand, within CA264_07045at 1624.549 kb on - strand, within CA264_07045at 1624.549 kb on - strand, within CA264_07045at 1624.552 kb on - strand, within CA264_07045at 1624.632 kb on + strand, within CA264_07045at 1624.747 kb on - strand, within CA264_07045at 1624.752 kb on + strand, within CA264_07045at 1624.752 kb on + strand, within CA264_07045at 1624.752 kb on + strand, within CA264_07045at 1624.752 kb on + strand, within CA264_07045at 1624.754 kb on + strand, within CA264_07045at 1624.754 kb on + strand, within CA264_07045at 1624.755 kb on - strand, within CA264_07045at 1624.800 kb on + strand, within CA264_07045at 1624.829 kb on + strand, within CA264_07045at 1625.007 kb on + strandat 1625.008 kb on - strandat 1625.008 kb on - strandat 1625.075 kb on + strandat 1625.088 kb on + strandat 1625.088 kb on + strandat 1625.089 kb on - strandat 1625.089 kb on - strandat 1625.089 kb on - strandat 1625.155 kb on + strandat 1625.167 kb on + strandat 1625.205 kb on + strandat 1625.206 kb on - strandat 1625.206 kb on - strandat 1625.208 kb on - strandat 1625.218 kb on - strandat 1625.221 kb on + strandat 1625.222 kb on - strandat 1625.268 kb on + strandat 1625.268 kb on + strandat 1625.269 kb on - strandat 1625.269 kb on - strandat 1625.269 kb on - strandat 1625.361 kb on - strandat 1625.391 kb on - strandat 1625.437 kb on - strandat 1625.464 kb on + strandat 1625.487 kb on + strandat 1625.574 kb on + strandat 1625.574 kb on + strandat 1625.574 kb on + strandat 1625.644 kb on + strandat 1625.653 kb on + strandat 1625.654 kb on - strandat 1625.662 kb on + strandat 1625.663 kb on - strandat 1625.700 kb on + strandat 1625.817 kb on + strand, within CA264_07050at 1625.818 kb on - strandat 1625.823 kb on + strand, within CA264_07050at 1625.823 kb on + strand, within CA264_07050at 1625.824 kb on - strand, within CA264_07050at 1625.824 kb on - strand, within CA264_07050at 1625.850 kb on - strand, within CA264_07050at 1625.850 kb on - strand, within CA264_07050at 1625.850 kb on - strand, within CA264_07050at 1625.867 kb on + strand, within CA264_07050

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.16 mM
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1,623,327 + CA264_07040 0.41 +0.4
1,623,422 - CA264_07040 0.48 -1.5
1,623,422 - CA264_07040 0.48 -0.1
1,623,422 - CA264_07040 0.48 +0.5
1,623,422 - CA264_07040 0.48 -1.2
1,623,492 + CA264_07040 0.54 -0.0
1,623,571 - CA264_07040 0.60 +0.4
1,623,584 + CA264_07040 0.61 -1.7
1,623,584 + CA264_07040 0.61 -0.1
1,623,628 - CA264_07040 0.65 +0.6
1,623,657 + CA264_07040 0.67 -1.3
1,623,658 - CA264_07040 0.67 -2.2
1,623,659 + CA264_07040 0.67 -1.1
1,623,660 - CA264_07040 0.68 +0.0
1,623,687 + CA264_07040 0.70 +1.0
1,623,847 - CA264_07040 0.83 -0.6
1,623,865 - CA264_07040 0.84 -1.6
1,623,877 - CA264_07040 0.85 -2.7
1,623,877 - CA264_07040 0.85 -0.7
1,623,877 - CA264_07040 0.85 -1.1
1,623,877 - CA264_07040 0.85 -3.1
1,624,207 + -0.3
1,624,210 + +0.0
1,624,249 + +0.8
1,624,257 + +0.5
1,624,258 - -1.1
1,624,330 + +0.5
1,624,332 + -0.6
1,624,457 + CA264_07045 0.26 -0.2
1,624,458 - CA264_07045 0.26 -2.6
1,624,458 - CA264_07045 0.26 -1.6
1,624,548 + CA264_07045 0.41 +1.3
1,624,549 - CA264_07045 0.41 -1.9
1,624,549 - CA264_07045 0.41 -0.9
1,624,552 - CA264_07045 0.42 -1.1
1,624,632 + CA264_07045 0.55 -1.0
1,624,747 - CA264_07045 0.75 -2.1
1,624,752 + CA264_07045 0.75 +0.8
1,624,752 + CA264_07045 0.75 -1.6
1,624,752 + CA264_07045 0.75 +0.2
1,624,752 + CA264_07045 0.75 +0.0
1,624,754 + CA264_07045 0.76 -0.1
1,624,754 + CA264_07045 0.76 +0.4
1,624,755 - CA264_07045 0.76 -1.9
1,624,800 + CA264_07045 0.84 +2.1
1,624,829 + CA264_07045 0.88 -0.4
1,625,007 + +0.5
1,625,008 - -1.8
1,625,008 - -1.6
1,625,075 + +0.2
1,625,088 + -0.0
1,625,088 + +0.0
1,625,089 - +1.5
1,625,089 - +0.4
1,625,089 - +0.7
1,625,155 + +0.0
1,625,167 + -0.7
1,625,205 + -0.2
1,625,206 - -1.6
1,625,206 - -0.1
1,625,208 - -0.9
1,625,218 - +2.3
1,625,221 + +0.6
1,625,222 - -1.9
1,625,268 + +0.1
1,625,268 + +0.2
1,625,269 - -0.9
1,625,269 - -2.4
1,625,269 - -0.4
1,625,361 - -0.7
1,625,391 - +0.2
1,625,437 - -0.6
1,625,464 + -0.1
1,625,487 + -0.2
1,625,574 + +0.7
1,625,574 + +0.5
1,625,574 + +0.2
1,625,644 + +0.3
1,625,653 + -1.5
1,625,654 - -0.3
1,625,662 + -0.1
1,625,663 - +0.3
1,625,700 + +0.8
1,625,817 + CA264_07050 0.30 +0.9
1,625,818 - +0.3
1,625,823 + CA264_07050 0.31 -0.7
1,625,823 + CA264_07050 0.31 -1.1
1,625,824 - CA264_07050 0.31 +0.5
1,625,824 - CA264_07050 0.31 -1.1
1,625,850 - CA264_07050 0.36 -1.1
1,625,850 - CA264_07050 0.36 -1.1
1,625,850 - CA264_07050 0.36 +0.1
1,625,867 + CA264_07050 0.39 -0.3

Or see this region's nucleotide sequence