Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_05650

Experiment: m.b. copper (II) chloride 0.16 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_05645 and CA264_05650 are separated by 311 nucleotidesCA264_05650 and CA264_05655 are separated by 180 nucleotides CA264_05645: CA264_05645 - L-serine dehydratase, iron-sulfur-dependent subunit beta, at 1,311,780 to 1,312,457 _05645 CA264_05650: CA264_05650 - tryptophan 2,3-dioxygenase, at 1,312,769 to 1,313,734 _05650 CA264_05655: CA264_05655 - FAD-binding protein, at 1,313,915 to 1,315,495 _05655 Position (kb) 1312 1313 1314Strain fitness (log2 ratio) -2 -1 0 1 2at 1311.769 kb on - strandat 1311.770 kb on + strandat 1311.770 kb on + strandat 1311.771 kb on - strandat 1311.775 kb on - strandat 1311.784 kb on - strandat 1311.784 kb on - strandat 1311.784 kb on - strandat 1311.802 kb on + strandat 1311.802 kb on + strandat 1311.858 kb on - strand, within CA264_05645at 1311.933 kb on - strand, within CA264_05645at 1312.001 kb on + strand, within CA264_05645at 1312.001 kb on + strand, within CA264_05645at 1312.139 kb on + strand, within CA264_05645at 1312.140 kb on - strand, within CA264_05645at 1312.178 kb on + strand, within CA264_05645at 1312.179 kb on - strand, within CA264_05645at 1312.179 kb on - strand, within CA264_05645at 1312.241 kb on + strand, within CA264_05645at 1312.241 kb on + strand, within CA264_05645at 1312.292 kb on - strand, within CA264_05645at 1312.313 kb on - strand, within CA264_05645at 1312.457 kb on + strandat 1312.458 kb on - strandat 1312.458 kb on - strandat 1312.458 kb on - strandat 1312.532 kb on + strandat 1312.599 kb on + strandat 1312.707 kb on + strandat 1312.720 kb on - strandat 1312.720 kb on - strandat 1312.807 kb on - strandat 1312.807 kb on - strandat 1312.827 kb on - strandat 1312.893 kb on - strand, within CA264_05650at 1312.901 kb on + strand, within CA264_05650at 1312.901 kb on + strand, within CA264_05650at 1312.901 kb on + strand, within CA264_05650at 1312.969 kb on + strand, within CA264_05650at 1313.077 kb on - strand, within CA264_05650at 1313.230 kb on + strand, within CA264_05650at 1313.312 kb on - strand, within CA264_05650at 1313.388 kb on - strand, within CA264_05650at 1313.420 kb on + strand, within CA264_05650at 1313.436 kb on + strand, within CA264_05650at 1313.436 kb on + strand, within CA264_05650at 1313.491 kb on - strand, within CA264_05650at 1313.521 kb on - strand, within CA264_05650at 1313.527 kb on - strand, within CA264_05650at 1313.546 kb on + strand, within CA264_05650at 1313.546 kb on + strand, within CA264_05650at 1313.546 kb on + strand, within CA264_05650at 1313.622 kb on - strand, within CA264_05650at 1313.757 kb on + strandat 1313.820 kb on + strandat 1313.931 kb on + strandat 1313.977 kb on - strandat 1313.981 kb on - strandat 1314.098 kb on + strand, within CA264_05655at 1314.125 kb on - strand, within CA264_05655at 1314.137 kb on + strand, within CA264_05655at 1314.137 kb on + strand, within CA264_05655at 1314.138 kb on - strand, within CA264_05655at 1314.140 kb on - strand, within CA264_05655at 1314.140 kb on - strand, within CA264_05655at 1314.153 kb on + strand, within CA264_05655at 1314.328 kb on + strand, within CA264_05655at 1314.362 kb on + strand, within CA264_05655at 1314.363 kb on - strand, within CA264_05655at 1314.500 kb on - strand, within CA264_05655at 1314.577 kb on + strand, within CA264_05655at 1314.578 kb on - strand, within CA264_05655at 1314.629 kb on + strand, within CA264_05655at 1314.630 kb on - strand, within CA264_05655at 1314.648 kb on + strand, within CA264_05655at 1314.649 kb on - strand, within CA264_05655at 1314.712 kb on - strand, within CA264_05655

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.16 mM
remove
1,311,769 - +0.8
1,311,770 + -0.7
1,311,770 + -0.3
1,311,771 - +1.7
1,311,775 - +0.8
1,311,784 - +0.5
1,311,784 - +0.0
1,311,784 - +0.1
1,311,802 + +0.3
1,311,802 + +0.2
1,311,858 - CA264_05645 0.12 -1.8
1,311,933 - CA264_05645 0.23 -0.5
1,312,001 + CA264_05645 0.33 +0.1
1,312,001 + CA264_05645 0.33 -1.4
1,312,139 + CA264_05645 0.53 -0.3
1,312,140 - CA264_05645 0.53 -0.4
1,312,178 + CA264_05645 0.59 -0.8
1,312,179 - CA264_05645 0.59 +1.3
1,312,179 - CA264_05645 0.59 -0.8
1,312,241 + CA264_05645 0.68 +0.2
1,312,241 + CA264_05645 0.68 +1.1
1,312,292 - CA264_05645 0.76 -0.5
1,312,313 - CA264_05645 0.79 -0.3
1,312,457 + -0.8
1,312,458 - -0.5
1,312,458 - +0.2
1,312,458 - -0.0
1,312,532 + -0.1
1,312,599 + +2.7
1,312,707 + -0.5
1,312,720 - +1.6
1,312,720 - +0.8
1,312,807 - +0.9
1,312,807 - +0.6
1,312,827 - +0.2
1,312,893 - CA264_05650 0.13 +1.5
1,312,901 + CA264_05650 0.14 +0.9
1,312,901 + CA264_05650 0.14 +0.4
1,312,901 + CA264_05650 0.14 +0.5
1,312,969 + CA264_05650 0.21 +1.6
1,313,077 - CA264_05650 0.32 +0.7
1,313,230 + CA264_05650 0.48 -1.5
1,313,312 - CA264_05650 0.56 -0.8
1,313,388 - CA264_05650 0.64 -0.1
1,313,420 + CA264_05650 0.67 -0.3
1,313,436 + CA264_05650 0.69 +0.2
1,313,436 + CA264_05650 0.69 -0.5
1,313,491 - CA264_05650 0.75 +0.2
1,313,521 - CA264_05650 0.78 +0.2
1,313,527 - CA264_05650 0.78 -0.5
1,313,546 + CA264_05650 0.80 -0.4
1,313,546 + CA264_05650 0.80 +0.9
1,313,546 + CA264_05650 0.80 -0.2
1,313,622 - CA264_05650 0.88 +0.0
1,313,757 + -0.3
1,313,820 + +1.5
1,313,931 + +0.6
1,313,977 - +0.8
1,313,981 - +0.4
1,314,098 + CA264_05655 0.12 -0.2
1,314,125 - CA264_05655 0.13 +1.1
1,314,137 + CA264_05655 0.14 -1.0
1,314,137 + CA264_05655 0.14 +0.1
1,314,138 - CA264_05655 0.14 +0.7
1,314,140 - CA264_05655 0.14 +1.3
1,314,140 - CA264_05655 0.14 +0.8
1,314,153 + CA264_05655 0.15 -0.7
1,314,328 + CA264_05655 0.26 +1.2
1,314,362 + CA264_05655 0.28 +0.0
1,314,363 - CA264_05655 0.28 +1.0
1,314,500 - CA264_05655 0.37 +1.1
1,314,577 + CA264_05655 0.42 -1.9
1,314,578 - CA264_05655 0.42 +1.3
1,314,629 + CA264_05655 0.45 +0.2
1,314,630 - CA264_05655 0.45 +0.7
1,314,648 + CA264_05655 0.46 +0.1
1,314,649 - CA264_05655 0.46 +0.8
1,314,712 - CA264_05655 0.50 +0.0

Or see this region's nucleotide sequence