Experiment: m.b. copper (II) chloride 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_05395 and CA264_05400 are separated by 225 nucleotides CA264_05400 and CA264_05405 are separated by 186 nucleotides CA264_05405 and CA264_05410 are separated by 425 nucleotides CA264_05410 and CA264_05415 are separated by 91 nucleotides
CA264_05395: CA264_05395 - MmcQ-like protein, at 1,254,034 to 1,254,399
_05395
CA264_05400: CA264_05400 - MarR family transcriptional regulator, at 1,254,625 to 1,255,125
_05400
CA264_05405: CA264_05405 - leucine--tRNA ligase, at 1,255,312 to 1,258,080
_05405
CA264_05410: CA264_05410 - hypothetical protein, at 1,258,506 to 1,258,796
_05410
CA264_05415: CA264_05415 - DsbA family protein, at 1,258,888 to 1,259,565
_05415
Position (kb)
1255
1256
1257
1258
1259 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1254.453 kb on - strand at 1254.479 kb on + strand at 1254.484 kb on - strand at 1254.548 kb on - strand at 1254.558 kb on - strand at 1254.618 kb on + strand at 1254.698 kb on - strand, within CA264_05400 at 1254.725 kb on - strand, within CA264_05400 at 1254.748 kb on - strand, within CA264_05400 at 1254.767 kb on - strand, within CA264_05400 at 1254.786 kb on - strand, within CA264_05400 at 1254.880 kb on - strand, within CA264_05400 at 1254.894 kb on - strand, within CA264_05400 at 1254.896 kb on + strand, within CA264_05400 at 1254.896 kb on + strand, within CA264_05400 at 1254.897 kb on - strand, within CA264_05400 at 1254.897 kb on - strand, within CA264_05400 at 1254.965 kb on + strand, within CA264_05400 at 1254.966 kb on - strand, within CA264_05400 at 1255.131 kb on - strand at 1255.141 kb on + strand at 1255.142 kb on - strand at 1255.220 kb on + strand at 1258.085 kb on + strand at 1258.085 kb on + strand at 1258.085 kb on + strand at 1258.085 kb on + strand at 1258.086 kb on - strand at 1258.086 kb on - strand at 1258.086 kb on - strand at 1258.086 kb on - strand at 1258.087 kb on + strand at 1258.087 kb on + strand at 1258.087 kb on + strand at 1258.087 kb on + strand at 1258.088 kb on - strand at 1258.088 kb on - strand at 1258.088 kb on - strand at 1258.093 kb on + strand at 1258.105 kb on + strand at 1258.105 kb on + strand at 1258.117 kb on + strand at 1258.118 kb on - strand at 1258.118 kb on - strand at 1258.123 kb on - strand at 1258.128 kb on + strand at 1258.143 kb on - strand at 1258.152 kb on + strand at 1258.153 kb on - strand at 1258.209 kb on - strand at 1258.230 kb on + strand at 1258.231 kb on - strand at 1258.231 kb on - strand at 1258.231 kb on - strand at 1258.254 kb on + strand at 1258.268 kb on - strand at 1258.470 kb on + strand at 1258.470 kb on + strand at 1258.471 kb on - strand at 1258.485 kb on + strand at 1258.486 kb on - strand at 1258.486 kb on - strand at 1258.486 kb on - strand at 1258.486 kb on - strand at 1258.489 kb on + strand at 1258.490 kb on - strand at 1258.527 kb on - strand at 1258.547 kb on - strand, within CA264_05410 at 1258.568 kb on - strand, within CA264_05410 at 1258.621 kb on - strand, within CA264_05410 at 1258.621 kb on - strand, within CA264_05410 at 1258.621 kb on - strand, within CA264_05410 at 1258.635 kb on - strand, within CA264_05410 at 1258.635 kb on - strand, within CA264_05410 at 1258.650 kb on - strand, within CA264_05410 at 1258.681 kb on + strand, within CA264_05410 at 1258.681 kb on + strand, within CA264_05410 at 1258.684 kb on + strand, within CA264_05410 at 1258.734 kb on + strand, within CA264_05410 at 1258.734 kb on + strand, within CA264_05410 at 1258.734 kb on + strand, within CA264_05410 at 1258.794 kb on + strand at 1258.794 kb on + strand at 1258.794 kb on + strand at 1258.795 kb on - strand at 1258.795 kb on - strand at 1258.795 kb on - strand at 1258.800 kb on + strand at 1258.801 kb on - strand at 1258.857 kb on + strand at 1258.857 kb on + strand at 1258.920 kb on + strand at 1258.920 kb on + strand at 1258.921 kb on - strand at 1259.023 kb on - strand, within CA264_05415 at 1259.031 kb on - strand, within CA264_05415
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.16 mM remove 1,254,453 - -0.5 1,254,479 + -3.1 1,254,484 - +0.9 1,254,548 - -1.1 1,254,558 - -1.6 1,254,618 + -0.3 1,254,698 - CA264_05400 0.15 -0.5 1,254,725 - CA264_05400 0.20 -0.6 1,254,748 - CA264_05400 0.25 -1.3 1,254,767 - CA264_05400 0.28 -1.0 1,254,786 - CA264_05400 0.32 +0.8 1,254,880 - CA264_05400 0.51 -0.3 1,254,894 - CA264_05400 0.54 -2.2 1,254,896 + CA264_05400 0.54 -0.2 1,254,896 + CA264_05400 0.54 -0.8 1,254,897 - CA264_05400 0.54 -0.0 1,254,897 - CA264_05400 0.54 -1.9 1,254,965 + CA264_05400 0.68 -1.2 1,254,966 - CA264_05400 0.68 -1.3 1,255,131 - +1.0 1,255,141 + +0.6 1,255,142 - -0.1 1,255,220 + +0.3 1,258,085 + +1.2 1,258,085 + +0.3 1,258,085 + +1.3 1,258,085 + +1.2 1,258,086 - +0.5 1,258,086 - +0.0 1,258,086 - -0.1 1,258,086 - -1.6 1,258,087 + -0.5 1,258,087 + -0.6 1,258,087 + -1.2 1,258,087 + -0.8 1,258,088 - +0.8 1,258,088 - -1.1 1,258,088 - -0.5 1,258,093 + +0.5 1,258,105 + -0.0 1,258,105 + +1.2 1,258,117 + -1.0 1,258,118 - +0.5 1,258,118 - -0.7 1,258,123 - -0.3 1,258,128 + +1.0 1,258,143 - -0.5 1,258,152 + -0.2 1,258,153 - +0.7 1,258,209 - -0.4 1,258,230 + +0.5 1,258,231 - +0.0 1,258,231 - +0.8 1,258,231 - +0.9 1,258,254 + +1.5 1,258,268 - -0.5 1,258,470 + -2.3 1,258,470 + -1.0 1,258,471 - -0.9 1,258,485 + -0.5 1,258,486 - -0.3 1,258,486 - +0.5 1,258,486 - +0.2 1,258,486 - -1.3 1,258,489 + -1.2 1,258,490 - +0.6 1,258,527 - +1.4 1,258,547 - CA264_05410 0.14 -0.2 1,258,568 - CA264_05410 0.21 -0.4 1,258,621 - CA264_05410 0.40 -0.2 1,258,621 - CA264_05410 0.40 +1.8 1,258,621 - CA264_05410 0.40 -0.8 1,258,635 - CA264_05410 0.44 +0.4 1,258,635 - CA264_05410 0.44 +1.6 1,258,650 - CA264_05410 0.49 +0.4 1,258,681 + CA264_05410 0.60 +1.1 1,258,681 + CA264_05410 0.60 +0.6 1,258,684 + CA264_05410 0.61 -0.6 1,258,734 + CA264_05410 0.78 -0.9 1,258,734 + CA264_05410 0.78 -0.5 1,258,734 + CA264_05410 0.78 +0.0 1,258,794 + +1.1 1,258,794 + -0.8 1,258,794 + -1.0 1,258,795 - +0.6 1,258,795 - -0.1 1,258,795 - -0.0 1,258,800 + -0.3 1,258,801 - +0.1 1,258,857 + +0.7 1,258,857 + +0.5 1,258,920 + -0.5 1,258,920 + -0.9 1,258,921 - +1.0 1,259,023 - CA264_05415 0.20 +0.0 1,259,031 - CA264_05415 0.21 +0.3
Or see this region's nucleotide sequence