Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_05405

Experiment: m.b. copper (II) chloride 0.16 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_05395 and CA264_05400 are separated by 225 nucleotidesCA264_05400 and CA264_05405 are separated by 186 nucleotidesCA264_05405 and CA264_05410 are separated by 425 nucleotidesCA264_05410 and CA264_05415 are separated by 91 nucleotides CA264_05395: CA264_05395 - MmcQ-like protein, at 1,254,034 to 1,254,399 _05395 CA264_05400: CA264_05400 - MarR family transcriptional regulator, at 1,254,625 to 1,255,125 _05400 CA264_05405: CA264_05405 - leucine--tRNA ligase, at 1,255,312 to 1,258,080 _05405 CA264_05410: CA264_05410 - hypothetical protein, at 1,258,506 to 1,258,796 _05410 CA264_05415: CA264_05415 - DsbA family protein, at 1,258,888 to 1,259,565 _05415 Position (kb) 1255 1256 1257 1258 1259Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1254.453 kb on - strandat 1254.479 kb on + strandat 1254.484 kb on - strandat 1254.548 kb on - strandat 1254.558 kb on - strandat 1254.618 kb on + strandat 1254.698 kb on - strand, within CA264_05400at 1254.725 kb on - strand, within CA264_05400at 1254.748 kb on - strand, within CA264_05400at 1254.767 kb on - strand, within CA264_05400at 1254.786 kb on - strand, within CA264_05400at 1254.880 kb on - strand, within CA264_05400at 1254.894 kb on - strand, within CA264_05400at 1254.896 kb on + strand, within CA264_05400at 1254.896 kb on + strand, within CA264_05400at 1254.897 kb on - strand, within CA264_05400at 1254.897 kb on - strand, within CA264_05400at 1254.965 kb on + strand, within CA264_05400at 1254.966 kb on - strand, within CA264_05400at 1255.131 kb on - strandat 1255.141 kb on + strandat 1255.142 kb on - strandat 1255.220 kb on + strandat 1258.085 kb on + strandat 1258.085 kb on + strandat 1258.085 kb on + strandat 1258.085 kb on + strandat 1258.086 kb on - strandat 1258.086 kb on - strandat 1258.086 kb on - strandat 1258.086 kb on - strandat 1258.087 kb on + strandat 1258.087 kb on + strandat 1258.087 kb on + strandat 1258.087 kb on + strandat 1258.088 kb on - strandat 1258.088 kb on - strandat 1258.088 kb on - strandat 1258.093 kb on + strandat 1258.105 kb on + strandat 1258.105 kb on + strandat 1258.117 kb on + strandat 1258.118 kb on - strandat 1258.118 kb on - strandat 1258.123 kb on - strandat 1258.128 kb on + strandat 1258.143 kb on - strandat 1258.152 kb on + strandat 1258.153 kb on - strandat 1258.209 kb on - strandat 1258.230 kb on + strandat 1258.231 kb on - strandat 1258.231 kb on - strandat 1258.231 kb on - strandat 1258.254 kb on + strandat 1258.268 kb on - strandat 1258.470 kb on + strandat 1258.470 kb on + strandat 1258.471 kb on - strandat 1258.485 kb on + strandat 1258.486 kb on - strandat 1258.486 kb on - strandat 1258.486 kb on - strandat 1258.486 kb on - strandat 1258.489 kb on + strandat 1258.490 kb on - strandat 1258.527 kb on - strandat 1258.547 kb on - strand, within CA264_05410at 1258.568 kb on - strand, within CA264_05410at 1258.621 kb on - strand, within CA264_05410at 1258.621 kb on - strand, within CA264_05410at 1258.621 kb on - strand, within CA264_05410at 1258.635 kb on - strand, within CA264_05410at 1258.635 kb on - strand, within CA264_05410at 1258.650 kb on - strand, within CA264_05410at 1258.681 kb on + strand, within CA264_05410at 1258.681 kb on + strand, within CA264_05410at 1258.684 kb on + strand, within CA264_05410at 1258.734 kb on + strand, within CA264_05410at 1258.734 kb on + strand, within CA264_05410at 1258.734 kb on + strand, within CA264_05410at 1258.794 kb on + strandat 1258.794 kb on + strandat 1258.794 kb on + strandat 1258.795 kb on - strandat 1258.795 kb on - strandat 1258.795 kb on - strandat 1258.800 kb on + strandat 1258.801 kb on - strandat 1258.857 kb on + strandat 1258.857 kb on + strandat 1258.920 kb on + strandat 1258.920 kb on + strandat 1258.921 kb on - strandat 1259.023 kb on - strand, within CA264_05415at 1259.031 kb on - strand, within CA264_05415

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.16 mM
remove
1,254,453 - -0.5
1,254,479 + -3.1
1,254,484 - +0.9
1,254,548 - -1.1
1,254,558 - -1.6
1,254,618 + -0.3
1,254,698 - CA264_05400 0.15 -0.5
1,254,725 - CA264_05400 0.20 -0.6
1,254,748 - CA264_05400 0.25 -1.3
1,254,767 - CA264_05400 0.28 -1.0
1,254,786 - CA264_05400 0.32 +0.8
1,254,880 - CA264_05400 0.51 -0.3
1,254,894 - CA264_05400 0.54 -2.2
1,254,896 + CA264_05400 0.54 -0.2
1,254,896 + CA264_05400 0.54 -0.8
1,254,897 - CA264_05400 0.54 -0.0
1,254,897 - CA264_05400 0.54 -1.9
1,254,965 + CA264_05400 0.68 -1.2
1,254,966 - CA264_05400 0.68 -1.3
1,255,131 - +1.0
1,255,141 + +0.6
1,255,142 - -0.1
1,255,220 + +0.3
1,258,085 + +1.2
1,258,085 + +0.3
1,258,085 + +1.3
1,258,085 + +1.2
1,258,086 - +0.5
1,258,086 - +0.0
1,258,086 - -0.1
1,258,086 - -1.6
1,258,087 + -0.5
1,258,087 + -0.6
1,258,087 + -1.2
1,258,087 + -0.8
1,258,088 - +0.8
1,258,088 - -1.1
1,258,088 - -0.5
1,258,093 + +0.5
1,258,105 + -0.0
1,258,105 + +1.2
1,258,117 + -1.0
1,258,118 - +0.5
1,258,118 - -0.7
1,258,123 - -0.3
1,258,128 + +1.0
1,258,143 - -0.5
1,258,152 + -0.2
1,258,153 - +0.7
1,258,209 - -0.4
1,258,230 + +0.5
1,258,231 - +0.0
1,258,231 - +0.8
1,258,231 - +0.9
1,258,254 + +1.5
1,258,268 - -0.5
1,258,470 + -2.3
1,258,470 + -1.0
1,258,471 - -0.9
1,258,485 + -0.5
1,258,486 - -0.3
1,258,486 - +0.5
1,258,486 - +0.2
1,258,486 - -1.3
1,258,489 + -1.2
1,258,490 - +0.6
1,258,527 - +1.4
1,258,547 - CA264_05410 0.14 -0.2
1,258,568 - CA264_05410 0.21 -0.4
1,258,621 - CA264_05410 0.40 -0.2
1,258,621 - CA264_05410 0.40 +1.8
1,258,621 - CA264_05410 0.40 -0.8
1,258,635 - CA264_05410 0.44 +0.4
1,258,635 - CA264_05410 0.44 +1.6
1,258,650 - CA264_05410 0.49 +0.4
1,258,681 + CA264_05410 0.60 +1.1
1,258,681 + CA264_05410 0.60 +0.6
1,258,684 + CA264_05410 0.61 -0.6
1,258,734 + CA264_05410 0.78 -0.9
1,258,734 + CA264_05410 0.78 -0.5
1,258,734 + CA264_05410 0.78 +0.0
1,258,794 + +1.1
1,258,794 + -0.8
1,258,794 + -1.0
1,258,795 - +0.6
1,258,795 - -0.1
1,258,795 - -0.0
1,258,800 + -0.3
1,258,801 - +0.1
1,258,857 + +0.7
1,258,857 + +0.5
1,258,920 + -0.5
1,258,920 + -0.9
1,258,921 - +1.0
1,259,023 - CA264_05415 0.20 +0.0
1,259,031 - CA264_05415 0.21 +0.3

Or see this region's nucleotide sequence