Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_05385

Experiment: m.b. copper (II) chloride 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_05380 and CA264_05385 are separated by 82 nucleotidesCA264_05385 and CA264_05390 are separated by 300 nucleotides CA264_05380: CA264_05380 - glutamine synthetase type III, at 1,248,789 to 1,250,978 _05380 CA264_05385: CA264_05385 - hypothetical protein, at 1,251,061 to 1,251,429 _05385 CA264_05390: CA264_05390 - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, at 1,251,730 to 1,253,703 _05390 Position (kb) 1251 1252Strain fitness (log2 ratio) -2 -1 0 1at 1250.996 kb on + strandat 1250.996 kb on + strandat 1251.020 kb on + strandat 1251.082 kb on + strandat 1251.083 kb on - strandat 1251.110 kb on - strand, within CA264_05385at 1251.157 kb on + strand, within CA264_05385at 1251.158 kb on - strand, within CA264_05385at 1251.175 kb on + strand, within CA264_05385at 1251.175 kb on + strand, within CA264_05385at 1251.175 kb on + strand, within CA264_05385at 1251.175 kb on + strand, within CA264_05385at 1251.175 kb on + strand, within CA264_05385at 1251.176 kb on - strand, within CA264_05385at 1251.323 kb on - strand, within CA264_05385at 1251.323 kb on - strand, within CA264_05385at 1251.324 kb on + strand, within CA264_05385at 1251.324 kb on + strand, within CA264_05385at 1251.324 kb on + strand, within CA264_05385at 1251.325 kb on - strand, within CA264_05385at 1251.429 kb on + strandat 1251.500 kb on + strandat 1251.592 kb on + strandat 1251.597 kb on - strandat 1251.689 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.16 mM
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1,250,996 + -0.2
1,250,996 + -0.3
1,251,020 + -1.1
1,251,082 + -0.1
1,251,083 - +1.1
1,251,110 - CA264_05385 0.13 -0.7
1,251,157 + CA264_05385 0.26 +0.5
1,251,158 - CA264_05385 0.26 +0.0
1,251,175 + CA264_05385 0.31 +0.0
1,251,175 + CA264_05385 0.31 +0.9
1,251,175 + CA264_05385 0.31 +0.3
1,251,175 + CA264_05385 0.31 -0.5
1,251,175 + CA264_05385 0.31 -0.6
1,251,176 - CA264_05385 0.31 -0.9
1,251,323 - CA264_05385 0.71 -0.5
1,251,323 - CA264_05385 0.71 +0.1
1,251,324 + CA264_05385 0.71 -0.2
1,251,324 + CA264_05385 0.71 +0.1
1,251,324 + CA264_05385 0.71 -0.6
1,251,325 - CA264_05385 0.72 -2.7
1,251,429 + -0.0
1,251,500 + +0.1
1,251,592 + +0.4
1,251,597 - +0.3
1,251,689 + +0.6

Or see this region's nucleotide sequence