Experiment: m.b. copper (II) chloride 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_04620 and CA264_04625 are separated by 16 nucleotides CA264_04625 and CA264_04630 are separated by 241 nucleotides CA264_04630 and CA264_04635 are separated by 194 nucleotides
CA264_04620: CA264_04620 - succinyl-CoA--3-ketoacid-CoA transferase, at 1,069,253 to 1,069,909
_04620
CA264_04625: CA264_04625 - succinyl-CoA--3-ketoacid-CoA transferase, at 1,069,926 to 1,070,624
_04625
CA264_04630: CA264_04630 - TIGR00341 family protein, at 1,070,866 to 1,072,743
_04630
CA264_04635: CA264_04635 - riboflavin biosynthesis protein RibF, at 1,072,938 to 1,073,870
_04635
Position (kb)
1070
1071
1072
1073 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1069.901 kb on + strand at 1069.901 kb on + strand at 1069.996 kb on + strand, within CA264_04625 at 1070.056 kb on - strand, within CA264_04625 at 1070.201 kb on - strand, within CA264_04625 at 1070.280 kb on + strand, within CA264_04625 at 1070.283 kb on - strand, within CA264_04625 at 1070.338 kb on - strand, within CA264_04625 at 1070.392 kb on + strand, within CA264_04625 at 1070.392 kb on + strand, within CA264_04625 at 1070.392 kb on + strand at 1070.392 kb on + strand, within CA264_04625 at 1070.393 kb on - strand, within CA264_04625 at 1070.433 kb on + strand, within CA264_04625 at 1070.465 kb on + strand, within CA264_04625 at 1070.481 kb on - strand, within CA264_04625 at 1070.481 kb on - strand, within CA264_04625 at 1070.616 kb on - strand at 1070.624 kb on + strand at 1070.625 kb on - strand at 1070.646 kb on + strand at 1070.649 kb on - strand at 1070.649 kb on - strand at 1070.649 kb on - strand at 1070.690 kb on + strand at 1070.698 kb on + strand at 1070.699 kb on - strand at 1070.699 kb on - strand at 1070.707 kb on + strand at 1070.727 kb on + strand at 1070.793 kb on + strand at 1070.830 kb on + strand at 1070.831 kb on - strand at 1070.883 kb on + strand at 1070.938 kb on - strand at 1070.959 kb on + strand at 1070.992 kb on + strand at 1070.993 kb on - strand at 1071.017 kb on - strand at 1071.023 kb on - strand at 1071.023 kb on - strand at 1071.037 kb on - strand at 1071.054 kb on - strand, within CA264_04630 at 1071.231 kb on + strand, within CA264_04630 at 1071.251 kb on - strand, within CA264_04630 at 1071.289 kb on + strand, within CA264_04630 at 1071.289 kb on + strand, within CA264_04630 at 1071.290 kb on - strand, within CA264_04630 at 1071.290 kb on - strand, within CA264_04630 at 1071.291 kb on + strand, within CA264_04630 at 1071.291 kb on + strand, within CA264_04630 at 1071.292 kb on - strand, within CA264_04630 at 1071.292 kb on - strand, within CA264_04630 at 1071.296 kb on - strand, within CA264_04630 at 1071.296 kb on - strand, within CA264_04630 at 1071.296 kb on - strand, within CA264_04630 at 1071.296 kb on - strand, within CA264_04630 at 1071.383 kb on + strand, within CA264_04630 at 1071.384 kb on - strand, within CA264_04630 at 1071.439 kb on - strand, within CA264_04630 at 1071.483 kb on + strand, within CA264_04630 at 1071.484 kb on - strand, within CA264_04630 at 1071.484 kb on - strand, within CA264_04630 at 1071.513 kb on + strand, within CA264_04630 at 1071.565 kb on - strand, within CA264_04630 at 1071.637 kb on - strand, within CA264_04630 at 1071.641 kb on - strand, within CA264_04630 at 1071.806 kb on - strand, within CA264_04630 at 1071.819 kb on - strand, within CA264_04630 at 1071.977 kb on + strand, within CA264_04630 at 1072.000 kb on + strand, within CA264_04630 at 1072.001 kb on - strand, within CA264_04630 at 1072.070 kb on + strand, within CA264_04630 at 1072.376 kb on - strand, within CA264_04630 at 1072.376 kb on - strand, within CA264_04630 at 1072.378 kb on - strand, within CA264_04630 at 1072.533 kb on + strand, within CA264_04630 at 1072.595 kb on + strand at 1072.595 kb on + strand at 1072.596 kb on - strand at 1072.651 kb on + strand at 1072.657 kb on + strand at 1072.658 kb on - strand at 1072.682 kb on - strand at 1072.722 kb on - strand at 1072.726 kb on + strand at 1072.727 kb on - strand at 1072.727 kb on - strand at 1072.727 kb on - strand at 1072.730 kb on - strand at 1072.732 kb on + strand at 1072.732 kb on + strand at 1072.732 kb on + strand at 1072.752 kb on - strand at 1072.774 kb on - strand at 1072.777 kb on + strand at 1072.796 kb on + strand at 1072.797 kb on - strand at 1072.826 kb on - strand at 1072.826 kb on - strand at 1072.844 kb on - strand at 1072.850 kb on - strand at 1072.851 kb on + strand at 1072.852 kb on - strand at 1072.852 kb on - strand at 1072.924 kb on + strand at 1072.925 kb on - strand at 1072.940 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.16 mM remove 1,069,901 + -0.5 1,069,901 + +0.2 1,069,996 + CA264_04625 0.10 -0.5 1,070,056 - CA264_04625 0.19 +0.3 1,070,201 - CA264_04625 0.39 +0.4 1,070,280 + CA264_04625 0.51 -1.1 1,070,283 - CA264_04625 0.51 -0.7 1,070,338 - CA264_04625 0.59 +1.1 1,070,392 + CA264_04625 0.67 +0.6 1,070,392 + CA264_04625 0.67 +0.3 1,070,392 + +0.4 1,070,392 + CA264_04625 0.67 -0.1 1,070,393 - CA264_04625 0.67 -0.0 1,070,433 + CA264_04625 0.73 +0.8 1,070,465 + CA264_04625 0.77 -0.1 1,070,481 - CA264_04625 0.79 -0.7 1,070,481 - CA264_04625 0.79 +1.9 1,070,616 - +0.2 1,070,624 + +0.1 1,070,625 - -0.2 1,070,646 + -0.2 1,070,649 - +0.5 1,070,649 - -0.3 1,070,649 - +0.3 1,070,690 + +0.3 1,070,698 + +0.1 1,070,699 - +0.0 1,070,699 - -1.0 1,070,707 + +0.0 1,070,727 + +1.3 1,070,793 + +1.3 1,070,830 + +0.1 1,070,831 - +2.6 1,070,883 + +0.6 1,070,938 - -0.7 1,070,959 + +1.8 1,070,992 + -0.8 1,070,993 - -0.6 1,071,017 - +0.1 1,071,023 - -0.6 1,071,023 - +1.1 1,071,037 - +1.1 1,071,054 - CA264_04630 0.10 -0.2 1,071,231 + CA264_04630 0.19 -0.2 1,071,251 - CA264_04630 0.21 +0.1 1,071,289 + CA264_04630 0.23 -0.3 1,071,289 + CA264_04630 0.23 -0.4 1,071,290 - CA264_04630 0.23 +0.2 1,071,290 - CA264_04630 0.23 +1.2 1,071,291 + CA264_04630 0.23 -0.5 1,071,291 + CA264_04630 0.23 +1.2 1,071,292 - CA264_04630 0.23 +1.4 1,071,292 - CA264_04630 0.23 -0.8 1,071,296 - CA264_04630 0.23 -1.9 1,071,296 - CA264_04630 0.23 +0.3 1,071,296 - CA264_04630 0.23 +0.8 1,071,296 - CA264_04630 0.23 +2.1 1,071,383 + CA264_04630 0.28 -0.8 1,071,384 - CA264_04630 0.28 +0.6 1,071,439 - CA264_04630 0.31 -0.5 1,071,483 + CA264_04630 0.33 +0.0 1,071,484 - CA264_04630 0.33 -0.7 1,071,484 - CA264_04630 0.33 +0.2 1,071,513 + CA264_04630 0.34 -0.8 1,071,565 - CA264_04630 0.37 -0.3 1,071,637 - CA264_04630 0.41 +0.1 1,071,641 - CA264_04630 0.41 +0.1 1,071,806 - CA264_04630 0.50 +1.2 1,071,819 - CA264_04630 0.51 +0.2 1,071,977 + CA264_04630 0.59 +0.6 1,072,000 + CA264_04630 0.60 +1.9 1,072,001 - CA264_04630 0.60 -0.2 1,072,070 + CA264_04630 0.64 -1.4 1,072,376 - CA264_04630 0.80 -0.1 1,072,376 - CA264_04630 0.80 +0.5 1,072,378 - CA264_04630 0.81 -0.4 1,072,533 + CA264_04630 0.89 -2.0 1,072,595 + +1.9 1,072,595 + -0.1 1,072,596 - -1.2 1,072,651 + +0.1 1,072,657 + -0.6 1,072,658 - -0.4 1,072,682 - +1.3 1,072,722 - -0.1 1,072,726 + -1.5 1,072,727 - +3.4 1,072,727 - +0.2 1,072,727 - +0.5 1,072,730 - -0.5 1,072,732 + -0.7 1,072,732 + +0.4 1,072,732 + +1.0 1,072,752 - -0.4 1,072,774 - -0.7 1,072,777 + -1.3 1,072,796 + +0.1 1,072,797 - -0.2 1,072,826 - -0.5 1,072,826 - +0.6 1,072,844 - +0.8 1,072,850 - -0.4 1,072,851 + -0.3 1,072,852 - +0.5 1,072,852 - -0.6 1,072,924 + -0.5 1,072,925 - -1.3 1,072,940 - -0.7
Or see this region's nucleotide sequence