Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_02790

Experiment: m.b. copper (II) chloride 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_02785 and CA264_02790 are separated by 86 nucleotidesCA264_02790 and CA264_02795 are separated by 8 nucleotidesCA264_02795 and CA264_02800 are separated by 172 nucleotides CA264_02785: CA264_02785 - membrane-binding protein, at 641,973 to 642,875 _02785 CA264_02790: CA264_02790 - DUF2807 domain-containing protein, at 642,962 to 643,678 _02790 CA264_02795: CA264_02795 - hypothetical protein, at 643,687 to 644,271 _02795 CA264_02800: CA264_02800 - hypothetical protein, at 644,444 to 644,653 _02800 Position (kb) 642 643 644Strain fitness (log2 ratio) -2 -1 0 1 2at 641.966 kb on - strandat 641.968 kb on + strandat 641.968 kb on + strandat 641.969 kb on - strandat 641.969 kb on - strandat 641.969 kb on - strandat 641.970 kb on + strandat 641.970 kb on + strandat 641.970 kb on + strandat 641.970 kb on + strandat 641.972 kb on + strandat 641.994 kb on - strandat 642.125 kb on - strand, within CA264_02785at 642.189 kb on + strand, within CA264_02785at 642.190 kb on - strand, within CA264_02785at 642.206 kb on + strand, within CA264_02785at 642.207 kb on - strand, within CA264_02785at 642.237 kb on - strand, within CA264_02785at 642.272 kb on - strand, within CA264_02785at 642.275 kb on + strand, within CA264_02785at 642.276 kb on - strand, within CA264_02785at 642.277 kb on + strand, within CA264_02785at 642.277 kb on + strand, within CA264_02785at 642.382 kb on + strand, within CA264_02785at 642.382 kb on + strand, within CA264_02785at 642.383 kb on - strand, within CA264_02785at 642.780 kb on + strand, within CA264_02785at 642.783 kb on + strand, within CA264_02785at 642.783 kb on + strand, within CA264_02785at 642.894 kb on + strandat 642.894 kb on + strandat 642.917 kb on + strandat 642.919 kb on + strandat 642.926 kb on + strandat 642.926 kb on + strandat 642.948 kb on - strandat 642.956 kb on - strandat 643.073 kb on - strand, within CA264_02790at 643.107 kb on + strand, within CA264_02790at 643.268 kb on + strand, within CA264_02790at 643.268 kb on + strand, within CA264_02790at 643.268 kb on + strand, within CA264_02790at 643.269 kb on - strand, within CA264_02790at 643.269 kb on - strand, within CA264_02790at 643.279 kb on - strand, within CA264_02790at 643.287 kb on + strand, within CA264_02790at 643.421 kb on - strand, within CA264_02790at 643.421 kb on - strand, within CA264_02790at 643.421 kb on - strand, within CA264_02790at 643.474 kb on - strand, within CA264_02790at 643.474 kb on - strand, within CA264_02790at 643.474 kb on - strand, within CA264_02790at 643.474 kb on - strand, within CA264_02790at 643.533 kb on + strand, within CA264_02790at 643.534 kb on - strand, within CA264_02790at 643.534 kb on - strand, within CA264_02790at 643.539 kb on + strand, within CA264_02790at 643.563 kb on + strand, within CA264_02790at 643.612 kb on - strandat 643.613 kb on + strandat 643.614 kb on - strandat 643.616 kb on + strandat 643.616 kb on + strandat 643.616 kb on + strandat 643.616 kb on + strandat 643.616 kb on + strandat 643.616 kb on + strandat 643.616 kb on + strandat 643.617 kb on - strandat 643.617 kb on - strandat 643.617 kb on - strandat 643.670 kb on - strandat 643.677 kb on - strandat 643.682 kb on + strandat 643.682 kb on + strandat 643.683 kb on - strandat 643.696 kb on - strandat 643.708 kb on + strandat 643.750 kb on - strand, within CA264_02795at 643.750 kb on - strand, within CA264_02795at 643.790 kb on - strand, within CA264_02795at 643.791 kb on + strand, within CA264_02795at 643.792 kb on - strand, within CA264_02795at 643.806 kb on - strand, within CA264_02795at 643.829 kb on + strand, within CA264_02795at 643.889 kb on - strand, within CA264_02795at 643.926 kb on + strand, within CA264_02795at 643.929 kb on + strand, within CA264_02795at 644.023 kb on - strand, within CA264_02795at 644.086 kb on - strand, within CA264_02795at 644.251 kb on + strandat 644.251 kb on + strandat 644.261 kb on + strandat 644.277 kb on - strandat 644.349 kb on - strandat 644.356 kb on + strandat 644.418 kb on + strandat 644.418 kb on + strandat 644.419 kb on - strandat 644.419 kb on - strandat 644.502 kb on + strand, within CA264_02800at 644.645 kb on + strandat 644.646 kb on - strandat 644.647 kb on + strandat 644.648 kb on - strandat 644.664 kb on + strandat 644.673 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.16 mM
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641,966 - -0.1
641,968 + +1.1
641,968 + +0.9
641,969 - +0.1
641,969 - +0.3
641,969 - +0.5
641,970 + -0.1
641,970 + +0.9
641,970 + +0.8
641,970 + +0.3
641,972 + +0.6
641,994 - +0.9
642,125 - CA264_02785 0.17 +2.0
642,189 + CA264_02785 0.24 +0.3
642,190 - CA264_02785 0.24 +0.6
642,206 + CA264_02785 0.26 -0.0
642,207 - CA264_02785 0.26 -0.2
642,237 - CA264_02785 0.29 -0.0
642,272 - CA264_02785 0.33 +0.5
642,275 + CA264_02785 0.33 -0.8
642,276 - CA264_02785 0.34 +0.2
642,277 + CA264_02785 0.34 -0.4
642,277 + CA264_02785 0.34 -1.4
642,382 + CA264_02785 0.45 -1.8
642,382 + CA264_02785 0.45 -0.4
642,383 - CA264_02785 0.45 +0.3
642,780 + CA264_02785 0.89 -0.3
642,783 + CA264_02785 0.90 +0.1
642,783 + CA264_02785 0.90 -0.5
642,894 + +0.9
642,894 + +0.4
642,917 + -1.0
642,919 + -0.1
642,926 + -1.0
642,926 + -0.1
642,948 - +0.6
642,956 - -1.6
643,073 - CA264_02790 0.15 +0.3
643,107 + CA264_02790 0.20 -0.1
643,268 + CA264_02790 0.43 +0.2
643,268 + CA264_02790 0.43 -0.6
643,268 + CA264_02790 0.43 +1.0
643,269 - CA264_02790 0.43 +0.5
643,269 - CA264_02790 0.43 -0.3
643,279 - CA264_02790 0.44 +0.8
643,287 + CA264_02790 0.45 -0.7
643,421 - CA264_02790 0.64 -0.4
643,421 - CA264_02790 0.64 -0.2
643,421 - CA264_02790 0.64 +0.9
643,474 - CA264_02790 0.71 +0.3
643,474 - CA264_02790 0.71 +0.8
643,474 - CA264_02790 0.71 +0.5
643,474 - CA264_02790 0.71 +0.5
643,533 + CA264_02790 0.80 -0.3
643,534 - CA264_02790 0.80 +0.6
643,534 - CA264_02790 0.80 +0.6
643,539 + CA264_02790 0.80 -0.4
643,563 + CA264_02790 0.84 +0.3
643,612 - -1.5
643,613 + -0.2
643,614 - +0.2
643,616 + -0.1
643,616 + +0.5
643,616 + -0.4
643,616 + -0.6
643,616 + -0.9
643,616 + -1.8
643,616 + -0.1
643,617 - +0.9
643,617 - +0.5
643,617 - -0.4
643,670 - +1.3
643,677 - -0.5
643,682 + +0.0
643,682 + -0.7
643,683 - +0.1
643,696 - +1.5
643,708 + -0.8
643,750 - CA264_02795 0.11 +0.6
643,750 - CA264_02795 0.11 +0.7
643,790 - CA264_02795 0.18 -0.2
643,791 + CA264_02795 0.18 +1.1
643,792 - CA264_02795 0.18 -0.0
643,806 - CA264_02795 0.20 -0.2
643,829 + CA264_02795 0.24 -0.4
643,889 - CA264_02795 0.35 +0.2
643,926 + CA264_02795 0.41 -0.2
643,929 + CA264_02795 0.41 -2.0
644,023 - CA264_02795 0.57 -0.5
644,086 - CA264_02795 0.68 +0.6
644,251 + -0.7
644,251 + -0.7
644,261 + +1.7
644,277 - +1.2
644,349 - -1.4
644,356 + +0.1
644,418 + -0.4
644,418 + -0.3
644,419 - -0.7
644,419 - -0.3
644,502 + CA264_02800 0.28 -0.9
644,645 + -1.0
644,646 - -0.0
644,647 + -1.9
644,648 - -1.0
644,664 + -0.1
644,673 + -1.0

Or see this region's nucleotide sequence