Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_02670

Experiment: m.b. copper (II) chloride 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_02660 and CA264_02665 are separated by 40 nucleotidesCA264_02665 and CA264_02670 are separated by 138 nucleotidesCA264_02670 and CA264_02675 are separated by 586 nucleotides CA264_02660: CA264_02660 - hypothetical protein, at 616,563 to 617,108 _02660 CA264_02665: CA264_02665 - hypothetical protein, at 617,149 to 617,370 _02665 CA264_02670: CA264_02670 - hypothetical protein, at 617,509 to 618,273 _02670 CA264_02675: CA264_02675 - succinate-semialdehyde dehydrogenase, at 618,860 to 620,224 _02675 Position (kb) 617 618 619Strain fitness (log2 ratio) -2 -1 0 1 2at 616.532 kb on - strandat 616.532 kb on - strandat 616.619 kb on - strand, within CA264_02660at 616.668 kb on + strand, within CA264_02660at 616.685 kb on + strand, within CA264_02660at 616.686 kb on - strand, within CA264_02660at 616.686 kb on - strand, within CA264_02660at 616.759 kb on + strand, within CA264_02660at 616.789 kb on + strand, within CA264_02660at 616.845 kb on + strand, within CA264_02660at 616.845 kb on + strand, within CA264_02660at 616.846 kb on - strand, within CA264_02660at 616.846 kb on - strand, within CA264_02660at 616.848 kb on + strand, within CA264_02660at 616.848 kb on + strand, within CA264_02660at 616.849 kb on - strand, within CA264_02660at 616.900 kb on - strand, within CA264_02660at 616.902 kb on + strand, within CA264_02660at 616.902 kb on + strand, within CA264_02660at 616.902 kb on + strand, within CA264_02660at 616.903 kb on - strand, within CA264_02660at 616.976 kb on + strand, within CA264_02660at 616.977 kb on - strand, within CA264_02660at 616.981 kb on + strand, within CA264_02660at 617.008 kb on + strand, within CA264_02660at 617.008 kb on + strand, within CA264_02660at 617.009 kb on - strand, within CA264_02660at 617.009 kb on - strand, within CA264_02660at 617.016 kb on + strand, within CA264_02660at 617.189 kb on + strand, within CA264_02665at 617.189 kb on + strand, within CA264_02665at 617.189 kb on + strand, within CA264_02665at 617.189 kb on + strand, within CA264_02665at 617.190 kb on - strand, within CA264_02665at 617.229 kb on + strand, within CA264_02665at 617.230 kb on - strand, within CA264_02665at 617.294 kb on - strand, within CA264_02665at 617.301 kb on + strand, within CA264_02665at 617.406 kb on - strandat 617.424 kb on + strandat 617.426 kb on + strandat 617.461 kb on + strandat 617.498 kb on + strandat 617.503 kb on + strandat 617.503 kb on + strandat 617.504 kb on - strandat 617.504 kb on - strandat 617.504 kb on - strandat 617.519 kb on + strandat 617.715 kb on + strand, within CA264_02670at 617.716 kb on - strand, within CA264_02670at 617.738 kb on + strand, within CA264_02670at 617.738 kb on + strand, within CA264_02670at 617.739 kb on - strand, within CA264_02670at 617.768 kb on - strand, within CA264_02670at 617.855 kb on + strand, within CA264_02670at 617.856 kb on - strand, within CA264_02670at 617.856 kb on - strand, within CA264_02670at 617.965 kb on - strand, within CA264_02670at 618.130 kb on + strand, within CA264_02670at 618.250 kb on + strandat 618.250 kb on + strandat 618.251 kb on - strandat 618.361 kb on + strandat 618.361 kb on + strandat 618.362 kb on - strandat 618.397 kb on - strandat 618.400 kb on - strandat 618.400 kb on - strandat 618.402 kb on - strandat 618.532 kb on - strandat 618.558 kb on + strandat 618.561 kb on - strandat 618.570 kb on + strandat 618.571 kb on - strandat 618.575 kb on - strandat 618.575 kb on - strandat 618.646 kb on - strandat 618.646 kb on - strandat 618.646 kb on - strandat 618.648 kb on + strandat 618.649 kb on - strandat 618.654 kb on + strandat 618.656 kb on + strandat 618.656 kb on + strandat 618.763 kb on - strandat 618.763 kb on - strandat 618.769 kb on + strandat 618.769 kb on + strandat 618.788 kb on - strandat 618.816 kb on - strandat 618.849 kb on - strandat 618.851 kb on + strandat 618.851 kb on + strandat 618.851 kb on + strandat 618.852 kb on - strandat 618.857 kb on - strandat 618.857 kb on - strandat 618.857 kb on - strandat 618.857 kb on - strandat 618.861 kb on + strandat 618.861 kb on + strandat 618.861 kb on + strandat 618.910 kb on - strandat 619.116 kb on - strand, within CA264_02675at 619.116 kb on - strand, within CA264_02675at 619.159 kb on - strand, within CA264_02675at 619.206 kb on + strand, within CA264_02675at 619.206 kb on + strand, within CA264_02675at 619.207 kb on - strand, within CA264_02675

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.16 mM
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616,532 - +0.7
616,532 - -0.5
616,619 - CA264_02660 0.10 +0.3
616,668 + CA264_02660 0.19 +1.0
616,685 + CA264_02660 0.22 +0.6
616,686 - CA264_02660 0.23 +0.8
616,686 - CA264_02660 0.23 -0.3
616,759 + CA264_02660 0.36 -0.4
616,789 + CA264_02660 0.41 +0.2
616,845 + CA264_02660 0.52 +0.4
616,845 + CA264_02660 0.52 +0.2
616,846 - CA264_02660 0.52 +0.7
616,846 - CA264_02660 0.52 +1.6
616,848 + CA264_02660 0.52 -0.5
616,848 + CA264_02660 0.52 +1.0
616,849 - CA264_02660 0.52 +0.2
616,900 - CA264_02660 0.62 -0.5
616,902 + CA264_02660 0.62 -0.7
616,902 + CA264_02660 0.62 +0.1
616,902 + CA264_02660 0.62 +0.6
616,903 - CA264_02660 0.62 -0.2
616,976 + CA264_02660 0.76 -0.2
616,977 - CA264_02660 0.76 -0.0
616,981 + CA264_02660 0.77 +0.2
617,008 + CA264_02660 0.82 +0.8
617,008 + CA264_02660 0.82 -0.2
617,009 - CA264_02660 0.82 -1.7
617,009 - CA264_02660 0.82 -0.4
617,016 + CA264_02660 0.83 -0.7
617,189 + CA264_02665 0.18 -0.8
617,189 + CA264_02665 0.18 +0.3
617,189 + CA264_02665 0.18 +0.2
617,189 + CA264_02665 0.18 -0.6
617,190 - CA264_02665 0.18 +0.7
617,229 + CA264_02665 0.36 -0.0
617,230 - CA264_02665 0.36 +0.8
617,294 - CA264_02665 0.65 -1.2
617,301 + CA264_02665 0.68 +0.9
617,406 - -0.2
617,424 + -0.7
617,426 + -0.5
617,461 + +0.4
617,498 + -0.2
617,503 + -0.3
617,503 + +0.4
617,504 - +0.1
617,504 - -0.9
617,504 - -0.4
617,519 + -0.2
617,715 + CA264_02670 0.27 -0.6
617,716 - CA264_02670 0.27 +0.4
617,738 + CA264_02670 0.30 -0.5
617,738 + CA264_02670 0.30 -0.4
617,739 - CA264_02670 0.30 +0.6
617,768 - CA264_02670 0.34 +0.9
617,855 + CA264_02670 0.45 -0.2
617,856 - CA264_02670 0.45 +0.7
617,856 - CA264_02670 0.45 -0.5
617,965 - CA264_02670 0.60 +0.1
618,130 + CA264_02670 0.81 +0.0
618,250 + +0.5
618,250 + -0.1
618,251 - -0.9
618,361 + +0.7
618,361 + +0.2
618,362 - +0.8
618,397 - -0.4
618,400 - +0.0
618,400 - -0.1
618,402 - -0.4
618,532 - -0.0
618,558 + -0.2
618,561 - +0.2
618,570 + -0.1
618,571 - +1.0
618,575 - -0.8
618,575 - -0.3
618,646 - +0.1
618,646 - +0.5
618,646 - -1.2
618,648 + -0.9
618,649 - -0.9
618,654 + -0.3
618,656 + +1.2
618,656 + +0.9
618,763 - -0.3
618,763 - -0.4
618,769 + -0.5
618,769 + -0.8
618,788 - +2.0
618,816 - +0.5
618,849 - -1.3
618,851 + -1.7
618,851 + -0.7
618,851 + -0.0
618,852 - -0.6
618,857 - -2.2
618,857 - -0.8
618,857 - -0.6
618,857 - -0.9
618,861 + +0.1
618,861 + +0.8
618,861 + +0.6
618,910 - -0.7
619,116 - CA264_02675 0.19 +1.7
619,116 - CA264_02675 0.19 -0.1
619,159 - CA264_02675 0.22 -0.6
619,206 + CA264_02675 0.25 -0.0
619,206 + CA264_02675 0.25 -0.6
619,207 - CA264_02675 0.25 -0.2

Or see this region's nucleotide sequence