Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_02330

Experiment: m.b. copper (II) chloride 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_02325 and CA264_02330 are separated by 288 nucleotidesCA264_02330 and CA264_02335 are separated by 336 nucleotides CA264_02325: CA264_02325 - hypothetical protein, at 536,308 to 537,714 _02325 CA264_02330: CA264_02330 - hypothetical protein, at 538,003 to 539,208 _02330 CA264_02335: CA264_02335 - hypothetical protein, at 539,545 to 540,114 _02335 Position (kb) 538 539 540Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 537.043 kb on + strand, within CA264_02325at 537.044 kb on - strand, within CA264_02325at 537.046 kb on - strand, within CA264_02325at 537.188 kb on - strand, within CA264_02325at 537.188 kb on - strand, within CA264_02325at 537.188 kb on - strand, within CA264_02325at 537.278 kb on - strand, within CA264_02325at 537.384 kb on + strand, within CA264_02325at 537.415 kb on + strand, within CA264_02325at 537.421 kb on - strand, within CA264_02325at 537.424 kb on + strand, within CA264_02325at 537.424 kb on + strand, within CA264_02325at 537.499 kb on + strand, within CA264_02325at 537.499 kb on + strand, within CA264_02325at 537.499 kb on + strand, within CA264_02325at 537.500 kb on - strand, within CA264_02325at 537.500 kb on - strand, within CA264_02325at 537.500 kb on - strand, within CA264_02325at 537.500 kb on - strand, within CA264_02325at 537.567 kb on + strand, within CA264_02325at 537.568 kb on - strand, within CA264_02325at 537.568 kb on - strand, within CA264_02325at 537.634 kb on - strandat 537.712 kb on + strandat 537.878 kb on - strandat 537.982 kb on + strandat 537.990 kb on + strandat 538.116 kb on + strandat 538.117 kb on - strandat 538.128 kb on + strand, within CA264_02330at 538.129 kb on - strand, within CA264_02330at 538.131 kb on + strand, within CA264_02330at 538.131 kb on + strand, within CA264_02330at 538.132 kb on - strand, within CA264_02330at 538.198 kb on - strand, within CA264_02330at 538.203 kb on + strand, within CA264_02330at 538.204 kb on - strand, within CA264_02330at 538.234 kb on + strand, within CA264_02330at 538.234 kb on + strand, within CA264_02330at 538.234 kb on + strand, within CA264_02330at 538.237 kb on - strand, within CA264_02330at 538.237 kb on - strand, within CA264_02330at 538.237 kb on - strand, within CA264_02330at 538.238 kb on + strand, within CA264_02330at 538.239 kb on - strand, within CA264_02330at 538.239 kb on - strand, within CA264_02330at 538.239 kb on - strand, within CA264_02330at 538.306 kb on - strand, within CA264_02330at 538.307 kb on + strand, within CA264_02330at 538.308 kb on - strand, within CA264_02330at 538.413 kb on - strand, within CA264_02330at 538.413 kb on - strand, within CA264_02330at 538.432 kb on - strand, within CA264_02330at 538.474 kb on + strand, within CA264_02330at 538.482 kb on - strand, within CA264_02330at 538.504 kb on + strand, within CA264_02330at 538.505 kb on - strand, within CA264_02330at 538.505 kb on - strand, within CA264_02330at 538.544 kb on - strand, within CA264_02330at 538.567 kb on + strand, within CA264_02330at 538.567 kb on + strand, within CA264_02330at 538.568 kb on - strand, within CA264_02330at 538.615 kb on - strand, within CA264_02330at 538.627 kb on - strand, within CA264_02330at 538.744 kb on + strand, within CA264_02330at 538.745 kb on - strand, within CA264_02330at 538.782 kb on + strand, within CA264_02330at 538.782 kb on + strand, within CA264_02330at 538.859 kb on + strand, within CA264_02330at 538.860 kb on - strand, within CA264_02330at 538.994 kb on - strand, within CA264_02330at 539.086 kb on - strand, within CA264_02330at 539.096 kb on + strandat 539.124 kb on + strandat 539.129 kb on + strandat 539.129 kb on + strandat 539.129 kb on + strandat 539.206 kb on + strandat 539.223 kb on - strandat 539.223 kb on - strandat 539.316 kb on - strandat 539.316 kb on - strandat 539.333 kb on + strandat 539.334 kb on - strandat 539.346 kb on + strandat 539.362 kb on + strandat 539.363 kb on - strandat 539.364 kb on + strandat 539.369 kb on + strandat 539.369 kb on + strandat 539.469 kb on - strandat 539.469 kb on - strandat 539.476 kb on + strandat 539.477 kb on - strandat 539.483 kb on + strandat 539.501 kb on + strandat 539.510 kb on + strandat 539.511 kb on - strandat 539.524 kb on - strandat 539.538 kb on - strandat 539.624 kb on + strand, within CA264_02335at 539.624 kb on + strand, within CA264_02335at 539.625 kb on - strand, within CA264_02335at 539.795 kb on + strand, within CA264_02335at 539.796 kb on - strand, within CA264_02335at 539.796 kb on - strand, within CA264_02335at 539.861 kb on - strand, within CA264_02335at 539.936 kb on - strand, within CA264_02335at 539.960 kb on - strand, within CA264_02335at 539.960 kb on - strand, within CA264_02335at 540.048 kb on + strand, within CA264_02335at 540.051 kb on + strand, within CA264_02335at 540.052 kb on - strand, within CA264_02335at 540.052 kb on - strand, within CA264_02335at 540.060 kb on + strandat 540.060 kb on + strandat 540.060 kb on + strandat 540.061 kb on - strandat 540.061 kb on - strandat 540.061 kb on - strandat 540.061 kb on - strandat 540.061 kb on - strandat 540.112 kb on + strandat 540.113 kb on - strandat 540.156 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.16 mM
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537,043 + CA264_02325 0.52 +0.2
537,044 - CA264_02325 0.52 -0.3
537,046 - CA264_02325 0.52 +0.1
537,188 - CA264_02325 0.63 +1.0
537,188 - CA264_02325 0.63 +0.9
537,188 - CA264_02325 0.63 -1.6
537,278 - CA264_02325 0.69 +1.1
537,384 + CA264_02325 0.76 -0.4
537,415 + CA264_02325 0.79 +1.0
537,421 - CA264_02325 0.79 -0.7
537,424 + CA264_02325 0.79 +1.4
537,424 + CA264_02325 0.79 -0.3
537,499 + CA264_02325 0.85 -3.3
537,499 + CA264_02325 0.85 -1.6
537,499 + CA264_02325 0.85 -0.2
537,500 - CA264_02325 0.85 +0.3
537,500 - CA264_02325 0.85 +1.6
537,500 - CA264_02325 0.85 +0.8
537,500 - CA264_02325 0.85 +0.5
537,567 + CA264_02325 0.89 -1.0
537,568 - CA264_02325 0.90 +0.0
537,568 - CA264_02325 0.90 -0.0
537,634 - -0.0
537,712 + -0.2
537,878 - +0.1
537,982 + -0.4
537,990 + -1.5
538,116 + -1.0
538,117 - -0.5
538,128 + CA264_02330 0.10 +0.3
538,129 - CA264_02330 0.10 -0.2
538,131 + CA264_02330 0.11 -0.1
538,131 + CA264_02330 0.11 -0.8
538,132 - CA264_02330 0.11 -0.4
538,198 - CA264_02330 0.16 +0.2
538,203 + CA264_02330 0.17 -0.4
538,204 - CA264_02330 0.17 -1.1
538,234 + CA264_02330 0.19 -2.2
538,234 + CA264_02330 0.19 -1.1
538,234 + CA264_02330 0.19 -0.2
538,237 - CA264_02330 0.19 -0.5
538,237 - CA264_02330 0.19 -0.4
538,237 - CA264_02330 0.19 +0.6
538,238 + CA264_02330 0.19 +0.7
538,239 - CA264_02330 0.20 -0.5
538,239 - CA264_02330 0.20 -0.9
538,239 - CA264_02330 0.20 -0.3
538,306 - CA264_02330 0.25 -0.7
538,307 + CA264_02330 0.25 -0.6
538,308 - CA264_02330 0.25 -0.2
538,413 - CA264_02330 0.34 +1.0
538,413 - CA264_02330 0.34 +0.8
538,432 - CA264_02330 0.36 +1.3
538,474 + CA264_02330 0.39 +2.0
538,482 - CA264_02330 0.40 +0.6
538,504 + CA264_02330 0.42 -1.1
538,505 - CA264_02330 0.42 -0.2
538,505 - CA264_02330 0.42 -1.4
538,544 - CA264_02330 0.45 +0.8
538,567 + CA264_02330 0.47 -0.0
538,567 + CA264_02330 0.47 -0.7
538,568 - CA264_02330 0.47 -0.1
538,615 - CA264_02330 0.51 +0.5
538,627 - CA264_02330 0.52 +1.2
538,744 + CA264_02330 0.61 -0.3
538,745 - CA264_02330 0.62 -0.2
538,782 + CA264_02330 0.65 -0.4
538,782 + CA264_02330 0.65 -3.1
538,859 + CA264_02330 0.71 -0.1
538,860 - CA264_02330 0.71 +0.6
538,994 - CA264_02330 0.82 +0.4
539,086 - CA264_02330 0.90 +0.2
539,096 + -1.1
539,124 + -1.5
539,129 + -0.4
539,129 + -0.0
539,129 + +0.6
539,206 + -1.3
539,223 - +0.4
539,223 - +1.2
539,316 - -0.1
539,316 - -0.4
539,333 + -1.0
539,334 - -1.0
539,346 + +1.9
539,362 + -0.7
539,363 - -0.2
539,364 + -0.2
539,369 + +1.0
539,369 + +0.4
539,469 - -0.8
539,469 - -0.5
539,476 + +0.0
539,477 - -0.5
539,483 + -0.1
539,501 + +1.0
539,510 + -0.3
539,511 - -0.1
539,524 - -0.9
539,538 - +0.6
539,624 + CA264_02335 0.14 -0.0
539,624 + CA264_02335 0.14 -0.6
539,625 - CA264_02335 0.14 -0.6
539,795 + CA264_02335 0.44 -0.5
539,796 - CA264_02335 0.44 -0.2
539,796 - CA264_02335 0.44 -0.4
539,861 - CA264_02335 0.55 -1.9
539,936 - CA264_02335 0.69 -0.6
539,960 - CA264_02335 0.73 +2.9
539,960 - CA264_02335 0.73 -0.4
540,048 + CA264_02335 0.88 +2.3
540,051 + CA264_02335 0.89 +0.5
540,052 - CA264_02335 0.89 -1.4
540,052 - CA264_02335 0.89 +1.2
540,060 + -0.9
540,060 + -0.9
540,060 + +0.2
540,061 - +1.8
540,061 - -0.4
540,061 - -0.0
540,061 - +0.6
540,061 - -1.0
540,112 + +0.2
540,113 - -0.6
540,156 + -0.8

Or see this region's nucleotide sequence