Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_01255

Experiment: m.b. copper (II) chloride 0.16 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_01250 and CA264_01255 are separated by 177 nucleotidesCA264_01255 and CA264_01260 are separated by 227 nucleotides CA264_01250: CA264_01250 - amidohydrolase, at 296,656 to 299,955 _01250 CA264_01255: CA264_01255 - thioredoxin domain-containing protein, at 300,133 to 302,196 _01255 CA264_01260: CA264_01260 - hypothetical protein, at 302,424 to 303,404 _01260 Position (kb) 300 301 302 303Strain fitness (log2 ratio) -2 -1 0 1 2 3at 299.234 kb on - strand, within CA264_01250at 299.305 kb on - strand, within CA264_01250at 299.307 kb on - strand, within CA264_01250at 299.343 kb on - strand, within CA264_01250at 299.345 kb on + strand, within CA264_01250at 299.345 kb on + strand, within CA264_01250at 299.346 kb on - strand, within CA264_01250at 299.346 kb on - strand, within CA264_01250at 299.346 kb on - strand, within CA264_01250at 299.346 kb on - strand, within CA264_01250at 299.346 kb on - strand, within CA264_01250at 299.351 kb on + strand, within CA264_01250at 299.351 kb on + strand, within CA264_01250at 299.352 kb on - strand, within CA264_01250at 299.444 kb on + strand, within CA264_01250at 299.445 kb on - strand, within CA264_01250at 299.445 kb on - strand, within CA264_01250at 299.507 kb on + strand, within CA264_01250at 299.562 kb on + strand, within CA264_01250at 299.631 kb on + strandat 299.732 kb on + strandat 299.733 kb on - strandat 299.733 kb on - strandat 299.733 kb on - strandat 299.733 kb on - strandat 299.785 kb on + strandat 299.799 kb on + strandat 299.800 kb on - strandat 299.800 kb on - strandat 299.929 kb on + strandat 299.930 kb on - strandat 299.931 kb on + strandat 299.932 kb on - strandat 299.940 kb on - strandat 299.960 kb on - strandat 299.972 kb on - strandat 299.988 kb on + strandat 299.989 kb on - strandat 300.001 kb on + strandat 300.043 kb on + strandat 300.043 kb on + strandat 300.075 kb on - strandat 300.092 kb on + strandat 300.092 kb on + strandat 300.092 kb on + strandat 300.093 kb on - strandat 300.093 kb on - strandat 300.093 kb on - strandat 300.096 kb on + strandat 300.109 kb on - strandat 300.128 kb on + strandat 300.134 kb on + strandat 300.135 kb on - strandat 300.172 kb on + strandat 300.236 kb on + strandat 300.236 kb on + strandat 300.236 kb on + strandat 300.236 kb on + strandat 300.237 kb on - strandat 300.402 kb on + strand, within CA264_01255at 300.402 kb on + strand, within CA264_01255at 300.402 kb on + strand, within CA264_01255at 300.403 kb on - strand, within CA264_01255at 300.403 kb on - strand, within CA264_01255at 300.521 kb on + strand, within CA264_01255at 300.522 kb on - strand, within CA264_01255at 300.522 kb on - strand, within CA264_01255at 300.543 kb on + strand, within CA264_01255at 300.544 kb on - strand, within CA264_01255at 300.635 kb on + strand, within CA264_01255at 300.654 kb on + strand, within CA264_01255at 300.678 kb on - strand, within CA264_01255at 300.732 kb on - strand, within CA264_01255at 300.806 kb on + strand, within CA264_01255at 300.807 kb on - strand, within CA264_01255at 300.840 kb on + strand, within CA264_01255at 300.841 kb on - strand, within CA264_01255at 300.903 kb on - strand, within CA264_01255at 300.906 kb on - strand, within CA264_01255at 301.139 kb on + strand, within CA264_01255at 301.139 kb on + strand, within CA264_01255at 301.139 kb on + strand, within CA264_01255at 301.139 kb on + strand, within CA264_01255at 301.142 kb on + strand, within CA264_01255at 301.143 kb on - strand, within CA264_01255at 301.174 kb on + strand, within CA264_01255at 301.174 kb on - strand, within CA264_01255at 301.175 kb on - strand, within CA264_01255at 301.203 kb on + strand, within CA264_01255at 301.203 kb on + strand, within CA264_01255at 301.204 kb on - strand, within CA264_01255at 301.205 kb on + strand, within CA264_01255at 301.250 kb on + strand, within CA264_01255at 301.250 kb on + strand, within CA264_01255at 301.250 kb on + strand, within CA264_01255at 301.251 kb on - strand, within CA264_01255at 301.305 kb on - strand, within CA264_01255at 301.319 kb on + strand, within CA264_01255at 301.319 kb on + strand, within CA264_01255at 301.355 kb on + strand, within CA264_01255at 301.355 kb on + strand, within CA264_01255at 301.356 kb on - strand, within CA264_01255at 301.365 kb on + strand, within CA264_01255at 301.460 kb on + strand, within CA264_01255at 301.461 kb on - strand, within CA264_01255at 301.461 kb on - strand, within CA264_01255at 301.492 kb on - strand, within CA264_01255at 301.538 kb on + strand, within CA264_01255at 301.557 kb on - strand, within CA264_01255at 301.671 kb on + strand, within CA264_01255at 301.689 kb on - strand, within CA264_01255at 301.692 kb on + strand, within CA264_01255at 301.692 kb on + strand, within CA264_01255at 301.693 kb on - strand, within CA264_01255at 301.693 kb on - strand, within CA264_01255at 301.696 kb on + strand, within CA264_01255at 301.697 kb on - strand, within CA264_01255at 301.766 kb on + strand, within CA264_01255at 301.817 kb on + strand, within CA264_01255at 301.817 kb on + strand, within CA264_01255at 301.910 kb on + strand, within CA264_01255at 301.910 kb on + strand, within CA264_01255at 301.911 kb on - strand, within CA264_01255at 301.911 kb on - strand, within CA264_01255at 302.130 kb on - strandat 302.164 kb on + strandat 302.164 kb on + strandat 302.165 kb on - strandat 302.165 kb on - strandat 302.202 kb on + strandat 302.202 kb on + strandat 302.203 kb on - strandat 302.203 kb on - strandat 302.231 kb on + strandat 302.325 kb on + strandat 302.325 kb on + strandat 302.325 kb on + strandat 302.326 kb on - strandat 302.332 kb on - strandat 302.369 kb on + strandat 302.407 kb on + strandat 302.545 kb on + strand, within CA264_01260at 302.601 kb on - strand, within CA264_01260at 302.601 kb on - strand, within CA264_01260at 302.623 kb on + strand, within CA264_01260at 302.634 kb on + strand, within CA264_01260at 302.652 kb on - strand, within CA264_01260at 302.652 kb on - strand, within CA264_01260at 302.653 kb on + strand, within CA264_01260at 302.654 kb on - strand, within CA264_01260at 302.654 kb on - strand, within CA264_01260at 302.654 kb on - strand, within CA264_01260at 302.654 kb on - strand, within CA264_01260at 302.734 kb on + strand, within CA264_01260at 302.734 kb on + strand, within CA264_01260at 302.734 kb on + strand, within CA264_01260at 302.746 kb on + strand, within CA264_01260at 302.902 kb on + strand, within CA264_01260at 302.902 kb on + strand, within CA264_01260at 302.902 kb on + strand, within CA264_01260at 302.903 kb on - strand, within CA264_01260at 302.903 kb on - strand, within CA264_01260at 303.039 kb on + strand, within CA264_01260at 303.040 kb on - strand, within CA264_01260at 303.040 kb on - strand, within CA264_01260at 303.041 kb on + strand, within CA264_01260at 303.041 kb on + strand, within CA264_01260at 303.067 kb on + strand, within CA264_01260at 303.106 kb on - strand, within CA264_01260at 303.106 kb on - strand, within CA264_01260at 303.151 kb on + strand, within CA264_01260at 303.151 kb on + strand, within CA264_01260at 303.191 kb on + strand, within CA264_01260

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.16 mM
remove
299,234 - CA264_01250 0.78 -0.5
299,305 - CA264_01250 0.80 -1.5
299,307 - CA264_01250 0.80 +0.4
299,343 - CA264_01250 0.81 -0.3
299,345 + CA264_01250 0.81 +0.4
299,345 + CA264_01250 0.81 -1.5
299,346 - CA264_01250 0.82 -0.3
299,346 - CA264_01250 0.82 -1.3
299,346 - CA264_01250 0.82 +0.4
299,346 - CA264_01250 0.82 +0.6
299,346 - CA264_01250 0.82 +0.8
299,351 + CA264_01250 0.82 +1.1
299,351 + CA264_01250 0.82 +1.1
299,352 - CA264_01250 0.82 +1.0
299,444 + CA264_01250 0.84 -0.6
299,445 - CA264_01250 0.85 -0.4
299,445 - CA264_01250 0.85 +0.2
299,507 + CA264_01250 0.86 +0.4
299,562 + CA264_01250 0.88 -0.6
299,631 + +0.8
299,732 + -1.5
299,733 - +0.2
299,733 - +0.6
299,733 - -0.0
299,733 - +0.3
299,785 + +0.2
299,799 + -1.3
299,800 - -0.1
299,800 - +0.8
299,929 + -1.9
299,930 - -0.1
299,931 + -0.3
299,932 - +0.3
299,940 - +0.2
299,960 - -0.6
299,972 - +0.3
299,988 + -1.4
299,989 - -0.1
300,001 + -0.5
300,043 + +0.1
300,043 + -0.2
300,075 - +1.2
300,092 + +1.4
300,092 + +0.6
300,092 + -0.7
300,093 - -0.1
300,093 - +0.0
300,093 - -0.4
300,096 + -1.8
300,109 - -1.1
300,128 + +0.2
300,134 + -1.0
300,135 - +0.7
300,172 + +0.4
300,236 + -0.1
300,236 + +1.9
300,236 + -1.7
300,236 + -1.0
300,237 - -0.3
300,402 + CA264_01255 0.13 -0.1
300,402 + CA264_01255 0.13 -0.0
300,402 + CA264_01255 0.13 -0.2
300,403 - CA264_01255 0.13 -0.0
300,403 - CA264_01255 0.13 +0.0
300,521 + CA264_01255 0.19 +0.5
300,522 - CA264_01255 0.19 +1.0
300,522 - CA264_01255 0.19 -1.1
300,543 + CA264_01255 0.20 +0.7
300,544 - CA264_01255 0.20 -0.7
300,635 + CA264_01255 0.24 +0.4
300,654 + CA264_01255 0.25 +0.5
300,678 - CA264_01255 0.26 -0.4
300,732 - CA264_01255 0.29 -0.2
300,806 + CA264_01255 0.33 -0.5
300,807 - CA264_01255 0.33 +0.5
300,840 + CA264_01255 0.34 -0.9
300,841 - CA264_01255 0.34 -0.9
300,903 - CA264_01255 0.37 +0.0
300,906 - CA264_01255 0.37 -0.2
301,139 + CA264_01255 0.49 +0.6
301,139 + CA264_01255 0.49 -0.9
301,139 + CA264_01255 0.49 +0.9
301,139 + CA264_01255 0.49 +0.0
301,142 + CA264_01255 0.49 +1.6
301,143 - CA264_01255 0.49 +0.7
301,174 + CA264_01255 0.50 -0.1
301,174 - CA264_01255 0.50 +0.1
301,175 - CA264_01255 0.50 -0.6
301,203 + CA264_01255 0.52 -0.5
301,203 + CA264_01255 0.52 -0.6
301,204 - CA264_01255 0.52 +3.2
301,205 + CA264_01255 0.52 +1.4
301,250 + CA264_01255 0.54 +1.7
301,250 + CA264_01255 0.54 +0.5
301,250 + CA264_01255 0.54 +0.5
301,251 - CA264_01255 0.54 -0.8
301,305 - CA264_01255 0.57 -0.5
301,319 + CA264_01255 0.57 -0.6
301,319 + CA264_01255 0.57 +1.8
301,355 + CA264_01255 0.59 -0.0
301,355 + CA264_01255 0.59 -0.0
301,356 - CA264_01255 0.59 +0.5
301,365 + CA264_01255 0.60 -0.6
301,460 + CA264_01255 0.64 +0.3
301,461 - CA264_01255 0.64 -0.8
301,461 - CA264_01255 0.64 +0.3
301,492 - CA264_01255 0.66 -0.2
301,538 + CA264_01255 0.68 +0.1
301,557 - CA264_01255 0.69 +0.3
301,671 + CA264_01255 0.75 +0.3
301,689 - CA264_01255 0.75 +0.8
301,692 + CA264_01255 0.76 +0.1
301,692 + CA264_01255 0.76 +0.1
301,693 - CA264_01255 0.76 -0.0
301,693 - CA264_01255 0.76 +0.1
301,696 + CA264_01255 0.76 -0.1
301,697 - CA264_01255 0.76 -0.9
301,766 + CA264_01255 0.79 -0.0
301,817 + CA264_01255 0.82 +0.6
301,817 + CA264_01255 0.82 -1.3
301,910 + CA264_01255 0.86 +0.1
301,910 + CA264_01255 0.86 +0.1
301,911 - CA264_01255 0.86 -0.0
301,911 - CA264_01255 0.86 -0.4
302,130 - -0.6
302,164 + +0.2
302,164 + +0.8
302,165 - +0.7
302,165 - -0.0
302,202 + +0.4
302,202 + +0.6
302,203 - -0.2
302,203 - +0.6
302,231 + +1.3
302,325 + +1.0
302,325 + +0.3
302,325 + +0.6
302,326 - -0.5
302,332 - -0.1
302,369 + +0.4
302,407 + -0.9
302,545 + CA264_01260 0.12 +0.5
302,601 - CA264_01260 0.18 -0.0
302,601 - CA264_01260 0.18 +0.3
302,623 + CA264_01260 0.20 +0.3
302,634 + CA264_01260 0.21 +0.2
302,652 - CA264_01260 0.23 -0.1
302,652 - CA264_01260 0.23 -0.8
302,653 + CA264_01260 0.23 +0.3
302,654 - CA264_01260 0.23 -0.3
302,654 - CA264_01260 0.23 -0.1
302,654 - CA264_01260 0.23 -0.8
302,654 - CA264_01260 0.23 -2.2
302,734 + CA264_01260 0.32 +0.8
302,734 + CA264_01260 0.32 +2.0
302,734 + CA264_01260 0.32 -0.2
302,746 + CA264_01260 0.33 +0.8
302,902 + CA264_01260 0.49 -0.3
302,902 + CA264_01260 0.49 +1.3
302,902 + CA264_01260 0.49 +0.4
302,903 - CA264_01260 0.49 -0.4
302,903 - CA264_01260 0.49 +0.2
303,039 + CA264_01260 0.63 -0.1
303,040 - CA264_01260 0.63 -0.2
303,040 - CA264_01260 0.63 -0.3
303,041 + CA264_01260 0.63 +0.8
303,041 + CA264_01260 0.63 +0.8
303,067 + CA264_01260 0.66 +0.8
303,106 - CA264_01260 0.70 +0.2
303,106 - CA264_01260 0.70 -0.2
303,151 + CA264_01260 0.74 +1.1
303,151 + CA264_01260 0.74 +0.6
303,191 + CA264_01260 0.78 +1.0

Or see this region's nucleotide sequence