Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_00790

Experiment: m.b. copper (II) chloride 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_00785 and CA264_00790 are separated by 103 nucleotidesCA264_00790 and CA264_00795 are separated by 77 nucleotides CA264_00785: CA264_00785 - hypothetical protein, at 167,980 to 169,044 _00785 CA264_00790: CA264_00790 - hypothetical protein, at 169,148 to 169,693 _00790 CA264_00795: CA264_00795 - hypothetical protein, at 169,771 to 171,078 _00795 Position (kb) 169 170Strain fitness (log2 ratio) -2 -1 0 1 2at 168.168 kb on - strand, within CA264_00785at 168.168 kb on - strand, within CA264_00785at 168.178 kb on + strand, within CA264_00785at 168.224 kb on + strand, within CA264_00785at 168.225 kb on - strand, within CA264_00785at 168.302 kb on + strand, within CA264_00785at 168.345 kb on + strand, within CA264_00785at 168.448 kb on - strand, within CA264_00785at 168.509 kb on + strand, within CA264_00785at 168.535 kb on - strand, within CA264_00785at 168.641 kb on + strand, within CA264_00785at 168.641 kb on + strand, within CA264_00785at 168.656 kb on + strand, within CA264_00785at 168.656 kb on + strand, within CA264_00785at 168.690 kb on - strand, within CA264_00785at 168.734 kb on + strand, within CA264_00785at 168.734 kb on + strand, within CA264_00785at 168.735 kb on - strand, within CA264_00785at 168.743 kb on + strand, within CA264_00785at 168.744 kb on - strand, within CA264_00785at 168.753 kb on + strand, within CA264_00785at 168.800 kb on + strand, within CA264_00785at 168.837 kb on - strand, within CA264_00785at 168.837 kb on - strand, within CA264_00785at 168.837 kb on - strand, within CA264_00785at 168.846 kb on + strand, within CA264_00785at 168.866 kb on + strand, within CA264_00785at 169.016 kb on - strandat 169.016 kb on - strandat 169.030 kb on - strandat 169.030 kb on - strandat 169.030 kb on - strandat 169.033 kb on + strandat 169.033 kb on + strandat 169.033 kb on + strandat 169.122 kb on - strandat 169.122 kb on - strandat 169.122 kb on - strandat 169.122 kb on - strandat 169.123 kb on + strandat 169.123 kb on + strandat 169.124 kb on - strandat 169.124 kb on - strandat 169.124 kb on - strandat 169.124 kb on - strandat 169.124 kb on - strandat 169.146 kb on - strandat 169.149 kb on + strandat 169.150 kb on - strandat 169.154 kb on + strandat 169.157 kb on + strandat 169.157 kb on + strandat 169.158 kb on - strandat 169.176 kb on - strandat 169.176 kb on - strandat 169.192 kb on + strandat 169.247 kb on + strand, within CA264_00790at 169.286 kb on - strand, within CA264_00790at 169.317 kb on + strand, within CA264_00790at 169.317 kb on + strand, within CA264_00790at 169.317 kb on + strand, within CA264_00790at 169.318 kb on - strand, within CA264_00790at 169.327 kb on + strand, within CA264_00790at 169.357 kb on - strand, within CA264_00790at 169.427 kb on + strand, within CA264_00790at 169.428 kb on - strand, within CA264_00790at 169.454 kb on + strand, within CA264_00790at 169.510 kb on - strand, within CA264_00790at 169.559 kb on + strand, within CA264_00790at 169.560 kb on - strand, within CA264_00790at 169.572 kb on + strand, within CA264_00790at 169.572 kb on + strand, within CA264_00790at 169.573 kb on - strand, within CA264_00790at 169.573 kb on - strand, within CA264_00790at 169.607 kb on + strand, within CA264_00790at 169.607 kb on + strand, within CA264_00790at 169.678 kb on + strandat 169.714 kb on - strandat 169.717 kb on + strandat 169.721 kb on + strandat 169.721 kb on + strandat 169.721 kb on + strandat 169.721 kb on + strandat 169.722 kb on - strandat 169.722 kb on - strandat 169.722 kb on - strandat 169.726 kb on + strandat 169.727 kb on - strandat 169.727 kb on - strandat 169.728 kb on + strandat 169.728 kb on + strandat 169.728 kb on + strandat 169.729 kb on - strandat 169.729 kb on - strandat 169.730 kb on + strandat 169.731 kb on - strandat 169.731 kb on - strandat 169.731 kb on - strandat 169.731 kb on - strandat 169.773 kb on - strandat 169.773 kb on - strandat 169.773 kb on - strandat 169.791 kb on - strandat 169.804 kb on - strandat 169.816 kb on + strandat 169.897 kb on + strandat 169.898 kb on - strandat 169.898 kb on - strandat 169.898 kb on - strandat 169.973 kb on + strand, within CA264_00795at 169.979 kb on - strand, within CA264_00795at 169.994 kb on + strand, within CA264_00795at 170.054 kb on + strand, within CA264_00795at 170.070 kb on + strand, within CA264_00795at 170.071 kb on - strand, within CA264_00795at 170.098 kb on + strand, within CA264_00795at 170.098 kb on + strand, within CA264_00795at 170.166 kb on - strand, within CA264_00795at 170.186 kb on + strand, within CA264_00795at 170.186 kb on + strand, within CA264_00795at 170.186 kb on + strand, within CA264_00795at 170.187 kb on - strand, within CA264_00795at 170.187 kb on - strand, within CA264_00795at 170.187 kb on - strand, within CA264_00795at 170.189 kb on + strand, within CA264_00795at 170.224 kb on - strand, within CA264_00795at 170.228 kb on - strand, within CA264_00795at 170.325 kb on - strand, within CA264_00795at 170.347 kb on - strand, within CA264_00795at 170.347 kb on - strand, within CA264_00795at 170.347 kb on - strand, within CA264_00795at 170.347 kb on - strand, within CA264_00795at 170.507 kb on + strand, within CA264_00795at 170.508 kb on - strand, within CA264_00795at 170.529 kb on - strand, within CA264_00795at 170.529 kb on - strand, within CA264_00795at 170.545 kb on + strand, within CA264_00795at 170.546 kb on - strand, within CA264_00795at 170.546 kb on - strand, within CA264_00795at 170.565 kb on + strand, within CA264_00795at 170.566 kb on - strand, within CA264_00795at 170.575 kb on - strand, within CA264_00795at 170.632 kb on + strand, within CA264_00795at 170.659 kb on + strand, within CA264_00795

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.16 mM
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168,168 - CA264_00785 0.18 +0.7
168,168 - CA264_00785 0.18 +1.3
168,178 + CA264_00785 0.19 +1.1
168,224 + CA264_00785 0.23 +0.3
168,225 - CA264_00785 0.23 -2.5
168,302 + CA264_00785 0.30 +0.4
168,345 + CA264_00785 0.34 -0.4
168,448 - CA264_00785 0.44 +0.5
168,509 + CA264_00785 0.50 -0.1
168,535 - CA264_00785 0.52 +0.0
168,641 + CA264_00785 0.62 -0.9
168,641 + CA264_00785 0.62 +2.4
168,656 + CA264_00785 0.63 -0.1
168,656 + CA264_00785 0.63 -0.1
168,690 - CA264_00785 0.67 +0.5
168,734 + CA264_00785 0.71 +1.9
168,734 + CA264_00785 0.71 +0.3
168,735 - CA264_00785 0.71 +0.2
168,743 + CA264_00785 0.72 +0.5
168,744 - CA264_00785 0.72 -0.0
168,753 + CA264_00785 0.73 +0.1
168,800 + CA264_00785 0.77 +2.1
168,837 - CA264_00785 0.80 +0.1
168,837 - CA264_00785 0.80 +0.1
168,837 - CA264_00785 0.80 -0.9
168,846 + CA264_00785 0.81 +0.0
168,866 + CA264_00785 0.83 +0.9
169,016 - +0.5
169,016 - +0.1
169,030 - +0.2
169,030 - -0.1
169,030 - +0.5
169,033 + -1.0
169,033 + -1.1
169,033 + +0.5
169,122 - -0.1
169,122 - +0.2
169,122 - +0.4
169,122 - -0.2
169,123 + -2.0
169,123 + +0.1
169,124 - +0.4
169,124 - +0.5
169,124 - +0.4
169,124 - -0.2
169,124 - +0.4
169,146 - +0.8
169,149 + +1.1
169,150 - +2.0
169,154 + +1.7
169,157 + -1.9
169,157 + +0.5
169,158 - +0.2
169,176 - +0.2
169,176 - -0.9
169,192 + +0.5
169,247 + CA264_00790 0.18 +0.5
169,286 - CA264_00790 0.25 +0.9
169,317 + CA264_00790 0.31 +1.4
169,317 + CA264_00790 0.31 +0.7
169,317 + CA264_00790 0.31 -0.9
169,318 - CA264_00790 0.31 -0.8
169,327 + CA264_00790 0.33 +0.6
169,357 - CA264_00790 0.38 -0.7
169,427 + CA264_00790 0.51 -0.0
169,428 - CA264_00790 0.51 -0.0
169,454 + CA264_00790 0.56 +0.3
169,510 - CA264_00790 0.66 -0.4
169,559 + CA264_00790 0.75 +0.3
169,560 - CA264_00790 0.75 -1.2
169,572 + CA264_00790 0.78 +0.8
169,572 + CA264_00790 0.78 -1.3
169,573 - CA264_00790 0.78 +1.1
169,573 - CA264_00790 0.78 -0.3
169,607 + CA264_00790 0.84 +0.1
169,607 + CA264_00790 0.84 +0.7
169,678 + -0.2
169,714 - +0.4
169,717 + -0.3
169,721 + -0.1
169,721 + +1.2
169,721 + +1.7
169,721 + -0.1
169,722 - -0.1
169,722 - -0.6
169,722 - +0.2
169,726 + -0.8
169,727 - -0.2
169,727 - -0.9
169,728 + -0.1
169,728 + -0.1
169,728 + -0.4
169,729 - -0.3
169,729 - -1.3
169,730 + +0.4
169,731 - +0.9
169,731 - -0.1
169,731 - +0.1
169,731 - +0.1
169,773 - +0.7
169,773 - -0.3
169,773 - -1.1
169,791 - -0.4
169,804 - +0.0
169,816 + +0.6
169,897 + +0.4
169,898 - +0.0
169,898 - -0.7
169,898 - +0.5
169,973 + CA264_00795 0.15 +0.7
169,979 - CA264_00795 0.16 +0.1
169,994 + CA264_00795 0.17 -0.5
170,054 + CA264_00795 0.22 +1.1
170,070 + CA264_00795 0.23 +1.1
170,071 - CA264_00795 0.23 -0.1
170,098 + CA264_00795 0.25 +0.8
170,098 + CA264_00795 0.25 +0.4
170,166 - CA264_00795 0.30 -0.2
170,186 + CA264_00795 0.32 +0.3
170,186 + CA264_00795 0.32 +1.1
170,186 + CA264_00795 0.32 +0.2
170,187 - CA264_00795 0.32 +0.4
170,187 - CA264_00795 0.32 +0.8
170,187 - CA264_00795 0.32 +0.1
170,189 + CA264_00795 0.32 +1.3
170,224 - CA264_00795 0.35 -0.1
170,228 - CA264_00795 0.35 -0.1
170,325 - CA264_00795 0.42 -0.4
170,347 - CA264_00795 0.44 +0.1
170,347 - CA264_00795 0.44 -0.3
170,347 - CA264_00795 0.44 -1.5
170,347 - CA264_00795 0.44 -0.7
170,507 + CA264_00795 0.56 +1.5
170,508 - CA264_00795 0.56 +1.6
170,529 - CA264_00795 0.58 +0.3
170,529 - CA264_00795 0.58 +0.6
170,545 + CA264_00795 0.59 +0.2
170,546 - CA264_00795 0.59 +0.2
170,546 - CA264_00795 0.59 -0.4
170,565 + CA264_00795 0.61 +0.2
170,566 - CA264_00795 0.61 +1.6
170,575 - CA264_00795 0.61 -1.1
170,632 + CA264_00795 0.66 +0.2
170,659 + CA264_00795 0.68 +0.9

Or see this region's nucleotide sequence