Experiment: Itaconic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS03380 and ABIE40_RS03385 are separated by 88 nucleotides ABIE40_RS03385 and ABIE40_RS03390 overlap by 4 nucleotides ABIE40_RS03390 and ABIE40_RS03395 are separated by 167 nucleotides ABIE40_RS03395 and ABIE40_RS03400 are separated by 43 nucleotides
ABIE40_RS03380: ABIE40_RS03380 - FAD-binding oxidoreductase, at 673,701 to 674,948
_RS03380
ABIE40_RS03385: ABIE40_RS03385 - isoprenylcysteine carboxylmethyltransferase family protein, at 675,037 to 675,528
_RS03385
ABIE40_RS03390: ABIE40_RS03390 - type III polyketide synthase, at 675,525 to 676,577
_RS03390
ABIE40_RS03395: ABIE40_RS03395 - tetratricopeptide repeat protein, at 676,745 to 677,281
_RS03395
ABIE40_RS03400: ABIE40_RS03400 - RNA polymerase sigma factor, at 677,325 to 677,930
_RS03400
Position (kb) 675
676
677 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 674.623 kb on + strand, within ABIE40_RS03380 at 674.672 kb on - strand, within ABIE40_RS03380 at 674.716 kb on + strand, within ABIE40_RS03380 at 674.716 kb on + strand, within ABIE40_RS03380 at 674.717 kb on - strand, within ABIE40_RS03380 at 674.717 kb on - strand, within ABIE40_RS03380 at 674.717 kb on - strand, within ABIE40_RS03380 at 674.783 kb on - strand, within ABIE40_RS03380 at 674.993 kb on - strand at 675.119 kb on + strand, within ABIE40_RS03385 at 675.119 kb on + strand, within ABIE40_RS03385 at 675.176 kb on + strand, within ABIE40_RS03385 at 675.176 kb on + strand, within ABIE40_RS03385 at 675.176 kb on + strand, within ABIE40_RS03385 at 675.176 kb on + strand, within ABIE40_RS03385 at 675.176 kb on + strand, within ABIE40_RS03385 at 675.176 kb on + strand, within ABIE40_RS03385 at 675.177 kb on - strand, within ABIE40_RS03385 at 675.177 kb on - strand, within ABIE40_RS03385 at 675.177 kb on - strand, within ABIE40_RS03385 at 675.177 kb on - strand, within ABIE40_RS03385 at 675.177 kb on - strand, within ABIE40_RS03385 at 675.177 kb on - strand, within ABIE40_RS03385 at 675.177 kb on - strand, within ABIE40_RS03385 at 675.200 kb on + strand, within ABIE40_RS03385 at 675.200 kb on + strand, within ABIE40_RS03385 at 675.905 kb on + strand, within ABIE40_RS03390 at 675.906 kb on - strand, within ABIE40_RS03390 at 676.019 kb on + strand, within ABIE40_RS03390 at 676.019 kb on + strand, within ABIE40_RS03390 at 676.019 kb on + strand, within ABIE40_RS03390 at 676.019 kb on + strand, within ABIE40_RS03390 at 676.289 kb on + strand, within ABIE40_RS03390 at 676.290 kb on - strand, within ABIE40_RS03390 at 676.351 kb on + strand, within ABIE40_RS03390 at 676.351 kb on + strand, within ABIE40_RS03390 at 676.351 kb on + strand, within ABIE40_RS03390 at 676.351 kb on + strand, within ABIE40_RS03390 at 676.351 kb on + strand, within ABIE40_RS03390 at 676.352 kb on - strand, within ABIE40_RS03390 at 676.352 kb on - strand, within ABIE40_RS03390 at 676.352 kb on - strand, within ABIE40_RS03390 at 676.352 kb on - strand, within ABIE40_RS03390 at 676.352 kb on - strand, within ABIE40_RS03390 at 676.352 kb on - strand, within ABIE40_RS03390 at 676.521 kb on - strand at 676.526 kb on + strand at 676.526 kb on + strand at 676.526 kb on + strand at 676.526 kb on + strand at 676.527 kb on - strand at 676.527 kb on - strand at 676.527 kb on - strand at 676.529 kb on - strand at 676.629 kb on - strand at 676.686 kb on + strand at 676.687 kb on - strand at 676.766 kb on - strand at 676.878 kb on - strand, within ABIE40_RS03395 at 676.946 kb on + strand, within ABIE40_RS03395 at 676.946 kb on + strand, within ABIE40_RS03395 at 676.947 kb on - strand, within ABIE40_RS03395 at 676.952 kb on + strand, within ABIE40_RS03395 at 676.952 kb on + strand, within ABIE40_RS03395 at 676.952 kb on + strand, within ABIE40_RS03395 at 676.952 kb on + strand, within ABIE40_RS03395 at 676.953 kb on - strand, within ABIE40_RS03395 at 676.953 kb on - strand, within ABIE40_RS03395 at 676.953 kb on - strand, within ABIE40_RS03395 at 676.953 kb on - strand, within ABIE40_RS03395 at 676.953 kb on - strand, within ABIE40_RS03395 at 677.040 kb on - strand, within ABIE40_RS03395 at 677.049 kb on - strand, within ABIE40_RS03395 at 677.091 kb on - strand, within ABIE40_RS03395 at 677.093 kb on + strand, within ABIE40_RS03395 at 677.093 kb on + strand, within ABIE40_RS03395 at 677.093 kb on + strand, within ABIE40_RS03395 at 677.094 kb on - strand, within ABIE40_RS03395 at 677.094 kb on - strand, within ABIE40_RS03395 at 677.124 kb on - strand, within ABIE40_RS03395 at 677.124 kb on - strand, within ABIE40_RS03395 at 677.141 kb on + strand, within ABIE40_RS03395 at 677.157 kb on - strand, within ABIE40_RS03395 at 677.157 kb on - strand, within ABIE40_RS03395 at 677.157 kb on - strand, within ABIE40_RS03395 at 677.237 kb on + strand at 677.238 kb on - strand at 677.238 kb on - strand at 677.238 kb on - strand at 677.355 kb on + strand at 677.355 kb on + strand at 677.355 kb on + strand at 677.356 kb on - strand at 677.357 kb on + strand at 677.357 kb on + strand at 677.357 kb on + strand at 677.357 kb on + strand at 677.357 kb on + strand at 677.358 kb on - strand at 677.358 kb on - strand at 677.358 kb on - strand at 677.444 kb on + strand, within ABIE40_RS03400 at 677.445 kb on - strand, within ABIE40_RS03400
Per-strain Table
Position Strand Gene LocusTag Fraction Itaconic Acid (C) remove 674,623 + ABIE40_RS03380 0.74 -0.2 674,672 - ABIE40_RS03380 0.78 -1.8 674,716 + ABIE40_RS03380 0.81 -0.0 674,716 + ABIE40_RS03380 0.81 -2.5 674,717 - ABIE40_RS03380 0.81 -0.5 674,717 - ABIE40_RS03380 0.81 -1.1 674,717 - ABIE40_RS03380 0.81 -0.3 674,783 - ABIE40_RS03380 0.87 -0.2 674,993 - -0.6 675,119 + ABIE40_RS03385 0.17 +1.2 675,119 + ABIE40_RS03385 0.17 -0.1 675,176 + ABIE40_RS03385 0.28 -1.3 675,176 + ABIE40_RS03385 0.28 -0.5 675,176 + ABIE40_RS03385 0.28 +0.4 675,176 + ABIE40_RS03385 0.28 +0.9 675,176 + ABIE40_RS03385 0.28 +0.9 675,176 + ABIE40_RS03385 0.28 +0.3 675,177 - ABIE40_RS03385 0.28 +0.1 675,177 - ABIE40_RS03385 0.28 -0.5 675,177 - ABIE40_RS03385 0.28 +0.2 675,177 - ABIE40_RS03385 0.28 +0.7 675,177 - ABIE40_RS03385 0.28 -1.7 675,177 - ABIE40_RS03385 0.28 -0.5 675,177 - ABIE40_RS03385 0.28 -0.4 675,200 + ABIE40_RS03385 0.33 -1.1 675,200 + ABIE40_RS03385 0.33 -0.4 675,905 + ABIE40_RS03390 0.36 -0.3 675,906 - ABIE40_RS03390 0.36 -1.8 676,019 + ABIE40_RS03390 0.47 -0.1 676,019 + ABIE40_RS03390 0.47 +0.8 676,019 + ABIE40_RS03390 0.47 -0.0 676,019 + ABIE40_RS03390 0.47 +0.9 676,289 + ABIE40_RS03390 0.73 +0.5 676,290 - ABIE40_RS03390 0.73 +0.6 676,351 + ABIE40_RS03390 0.78 +0.4 676,351 + ABIE40_RS03390 0.78 +0.2 676,351 + ABIE40_RS03390 0.78 +1.1 676,351 + ABIE40_RS03390 0.78 +0.3 676,351 + ABIE40_RS03390 0.78 +0.9 676,352 - ABIE40_RS03390 0.79 +0.7 676,352 - ABIE40_RS03390 0.79 +0.1 676,352 - ABIE40_RS03390 0.79 +0.1 676,352 - ABIE40_RS03390 0.79 -0.6 676,352 - ABIE40_RS03390 0.79 +1.1 676,352 - ABIE40_RS03390 0.79 -1.0 676,521 - -0.9 676,526 + -0.5 676,526 + -1.9 676,526 + +0.7 676,526 + -0.0 676,527 - -0.3 676,527 - +0.1 676,527 - +0.1 676,529 - -2.2 676,629 - +0.3 676,686 + -0.5 676,687 - +0.8 676,766 - +0.1 676,878 - ABIE40_RS03395 0.25 +1.4 676,946 + ABIE40_RS03395 0.37 +0.4 676,946 + ABIE40_RS03395 0.37 -0.2 676,947 - ABIE40_RS03395 0.38 -1.2 676,952 + ABIE40_RS03395 0.39 +0.1 676,952 + ABIE40_RS03395 0.39 -0.8 676,952 + ABIE40_RS03395 0.39 +0.2 676,952 + ABIE40_RS03395 0.39 +0.7 676,953 - ABIE40_RS03395 0.39 +0.2 676,953 - ABIE40_RS03395 0.39 -0.7 676,953 - ABIE40_RS03395 0.39 -0.3 676,953 - ABIE40_RS03395 0.39 -0.9 676,953 - ABIE40_RS03395 0.39 +0.6 677,040 - ABIE40_RS03395 0.55 -0.2 677,049 - ABIE40_RS03395 0.57 -0.4 677,091 - ABIE40_RS03395 0.64 -0.2 677,093 + ABIE40_RS03395 0.65 +0.2 677,093 + ABIE40_RS03395 0.65 -0.0 677,093 + ABIE40_RS03395 0.65 +0.2 677,094 - ABIE40_RS03395 0.65 +0.4 677,094 - ABIE40_RS03395 0.65 -0.2 677,124 - ABIE40_RS03395 0.71 +0.7 677,124 - ABIE40_RS03395 0.71 -0.6 677,141 + ABIE40_RS03395 0.74 +0.2 677,157 - ABIE40_RS03395 0.77 -0.3 677,157 - ABIE40_RS03395 0.77 +0.6 677,157 - ABIE40_RS03395 0.77 +0.9 677,237 + +0.7 677,238 - -0.3 677,238 - -0.6 677,238 - -0.5 677,355 + +4.6 677,355 + -0.8 677,355 + -1.1 677,356 - +0.1 677,357 + +1.0 677,357 + -0.7 677,357 + +0.1 677,357 + +0.3 677,357 + -0.6 677,358 - -0.4 677,358 - +0.4 677,358 - +0.8 677,444 + ABIE40_RS03400 0.20 +0.1 677,445 - ABIE40_RS03400 0.20 -1.2
Or see this region's nucleotide sequence