Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS00550

Experiment: Itaconic Acid (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Itaconic Acid (C)
113,387	-		ABIE40_RS00540	0.59	-0.8
113,509	+		ABIE40_RS00540	0.79	+0.3
113,509	+		ABIE40_RS00540	0.79	+0.9
113,509	+		ABIE40_RS00540	0.79	-1.7
113,509	+		ABIE40_RS00540	0.79	-0.4
113,509	+		ABIE40_RS00540	0.79	-0.4
113,510	-		ABIE40_RS00540	0.79	-0.4
113,510	-		ABIE40_RS00540	0.79	+1.9
113,510	-		ABIE40_RS00540	0.79	-0.6
113,510	-		ABIE40_RS00540	0.79	+0.2
113,510	-		ABIE40_RS00540	0.79	+0.4
113,510	-		ABIE40_RS00540	0.79	+0.6
113,510	-		ABIE40_RS00540	0.79	-1.8
113,510	-		ABIE40_RS00540	0.79	+0.4
113,510	-		ABIE40_RS00540	0.79	+0.2
113,510	-		ABIE40_RS00540	0.79	+0.0
113,515	+		ABIE40_RS00540	0.80	-0.2
113,515	+		ABIE40_RS00540	0.80	-0.5
113,515	+		ABIE40_RS00540	0.80	+0.3
113,515	+		ABIE40_RS00540	0.80	-3.1
113,516	-		ABIE40_RS00540	0.80	+1.1
113,516	-		ABIE40_RS00540	0.80	+1.5
113,565	-		ABIE40_RS00540	0.88	+0.3
113,567	-		ABIE40_RS00540	0.88	-0.7
113,611	+				-0.1
113,612	-				-0.8
113,612	-				-0.0
113,612	-				-0.9
114,057	+		ABIE40_RS00545	0.59	-0.0
114,165	+		ABIE40_RS00545	0.74	+0.9
114,165	+		ABIE40_RS00545	0.74	-0.3
114,165	+		ABIE40_RS00545	0.74	-0.8
114,165	+		ABIE40_RS00545	0.74	-0.3
114,165	+		ABIE40_RS00545	0.74	-0.0
114,165	+		ABIE40_RS00545	0.74	+0.1
114,165	+		ABIE40_RS00545	0.74	+0.1
114,165	+		ABIE40_RS00545	0.74	-1.1
114,166	-		ABIE40_RS00545	0.75	+0.2
114,166	-		ABIE40_RS00545	0.75	-0.7
114,166	-		ABIE40_RS00545	0.75	-0.4
114,166	-		ABIE40_RS00545	0.75	-0.5
114,166	-		ABIE40_RS00545	0.75	-0.1
114,166	-		ABIE40_RS00545	0.75	-1.2
114,166	-		ABIE40_RS00545	0.75	-0.0
114,384	+				+0.3
114,384	+				-0.1
114,385	-				-0.2
114,385	-				-0.7
114,385	-				+0.5
114,386	+				-0.5
114,386	+				+0.8
114,387	-				-1.5
114,387	-				-2.4
114,755	+		ABIE40_RS00550	0.52	-1.1
114,755	+		ABIE40_RS00550	0.52	+2.1
114,755	+		ABIE40_RS00550	0.52	+0.8
114,755	+		ABIE40_RS00550	0.52	+0.1
114,755	+		ABIE40_RS00550	0.52	+0.5
114,755	+		ABIE40_RS00550	0.52	-1.4
114,900	-		ABIE40_RS00550	0.71	+0.4
114,911	+		ABIE40_RS00550	0.72	-0.4
114,911	+		ABIE40_RS00550	0.72	+1.1
114,927	+		ABIE40_RS00550	0.74	+1.0
114,927	+		ABIE40_RS00550	0.74	-1.1
114,927	+		ABIE40_RS00550	0.74	+0.0
114,927	+		ABIE40_RS00550	0.74	-0.1
114,927	+		ABIE40_RS00550	0.74	+0.0
114,927	+		ABIE40_RS00550	0.74	-0.7
114,927	+		ABIE40_RS00550	0.74	-0.1
114,928	-		ABIE40_RS00550	0.75	+1.5
114,928	-		ABIE40_RS00550	0.75	+0.7
114,928	-		ABIE40_RS00550	0.75	-0.7
114,928	-		ABIE40_RS00550	0.75	+0.2
114,928	-		ABIE40_RS00550	0.75	-0.9
114,928	-		ABIE40_RS00550	0.75	+0.1
114,932	+		ABIE40_RS00550	0.75	+0.2
114,932	+		ABIE40_RS00550	0.75	-0.2
114,932	+		ABIE40_RS00550	0.75	+0.5
114,932	+		ABIE40_RS00550	0.75	+1.2
115,051	+				-0.2
115,051	+				+1.2
115,051	+				-0.9
115,052	-				-0.1
115,052	-				+1.6
115,079	+				-0.9
115,080	-				-2.4
115,196	+				-0.2
115,252	+		ABIE40_RS00555	0.15	+1.3
115,252	+		ABIE40_RS00555	0.15	-0.4
115,252	+		ABIE40_RS00555	0.15	+0.1
115,253	-		ABIE40_RS00555	0.15	+0.3
115,253	-		ABIE40_RS00555	0.15	-0.2
115,253	-		ABIE40_RS00555	0.15	-2.9
115,327	-		ABIE40_RS00555	0.23	-0.1
115,344	-		ABIE40_RS00555	0.25	-0.1
115,346	-		ABIE40_RS00555	0.25	-0.4
115,360	+		ABIE40_RS00555	0.27	+0.6
115,360	+		ABIE40_RS00555	0.27	+0.5
115,360	+		ABIE40_RS00555	0.27	+0.1
115,361	-		ABIE40_RS00555	0.27	-0.3
115,361	-		ABIE40_RS00555	0.27	+0.1
115,459	+		ABIE40_RS00555	0.38	-1.4
115,459	+		ABIE40_RS00555	0.38	+5.3
115,460	-		ABIE40_RS00555	0.38	+2.5
115,483	+		ABIE40_RS00555	0.41	-0.0
115,489	+		ABIE40_RS00555	0.42	-0.1
115,489	+		ABIE40_RS00555	0.42	+0.6
115,489	+		ABIE40_RS00555	0.42	-0.3
115,489	+		ABIE40_RS00555	0.42	-0.5
115,489	+		ABIE40_RS00555	0.42	-0.3
115,489	+		ABIE40_RS00555	0.42	-0.1
115,489	+		ABIE40_RS00555	0.42	+0.1
115,489	+		ABIE40_RS00555	0.42	-1.2
115,489	+		ABIE40_RS00555	0.42	-0.6
115,489	+		ABIE40_RS00555	0.42	+0.1
115,489	+		ABIE40_RS00555	0.42	+0.6
115,489	+		ABIE40_RS00555	0.42	+0.1
115,489	+		ABIE40_RS00555	0.42	-1.4
115,489	+		ABIE40_RS00555	0.42	+1.5
115,489	+		ABIE40_RS00555	0.42	+0.0
115,490	-		ABIE40_RS00555	0.42	+1.0
115,490	-		ABIE40_RS00555	0.42	-1.4
115,490	-		ABIE40_RS00555	0.42	+0.7
115,490	-		ABIE40_RS00555	0.42	+0.8
115,490	-		ABIE40_RS00555	0.42	-0.5
115,490	-		ABIE40_RS00555	0.42	+0.0
115,490	-		ABIE40_RS00555	0.42	+0.9
115,490	-		ABIE40_RS00555	0.42	-0.1
115,490	-		ABIE40_RS00555	0.42	+0.3
115,490	-		ABIE40_RS00555	0.42	+0.7
115,490	-		ABIE40_RS00555	0.42	+0.0
115,490	-		ABIE40_RS00555	0.42	+0.1
115,490	-		ABIE40_RS00555	0.42	+0.3
115,490	-		ABIE40_RS00555	0.42	+0.5
115,490	-		ABIE40_RS00555	0.42	-0.1
115,490	-		ABIE40_RS00555	0.42	+0.0
115,528	+		ABIE40_RS00555	0.46	-0.4
115,529	-		ABIE40_RS00555	0.46	-1.1
115,552	+		ABIE40_RS00555	0.49	+0.9
115,553	-		ABIE40_RS00555	0.49	+1.0
115,553	-		ABIE40_RS00555	0.49	+0.8
115,709	+		ABIE40_RS00555	0.67	-0.5
115,709	+		ABIE40_RS00555	0.67	+0.1
115,710	-		ABIE40_RS00555	0.67	-0.4
115,710	-		ABIE40_RS00555	0.67	-0.1
115,710	-		ABIE40_RS00555	0.67	+0.7
115,710	-		ABIE40_RS00555	0.67	-1.5
115,969	+				-1.2
115,970	-				+2.9
115,981	+				-0.2
115,981	+				+1.9
115,981	+				+1.9
115,982	-				-0.0
116,097	+				+0.4
116,097	+				+0.2
116,097	+				-2.1
116,097	+				+0.3
116,098	-				+0.4
116,098	-				-0.0