Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RPSI07_RS11590 and RPSI07_RS11595 are separated by 46 nucleotides RPSI07_RS11595 and RPSI07_RS11600 are separated by 79 nucleotides RPSI07_RS11600 and RPSI07_RS11605 are separated by 77 nucleotides
RPSI07_RS11590: RPSI07_RS11590 - polyisoprenoid-binding protein, at 798,225 to 798,791
_RS11590
RPSI07_RS11595: RPSI07_RS11595 - polyisoprenoid-binding protein, at 798,838 to 799,434
_RS11595
RPSI07_RS11600: RPSI07_RS11600 - protein translocase subunit SecF, at 799,514 to 800,482
_RS11600
RPSI07_RS11605: RPSI07_RS11605 - protein translocase subunit SecD, at 800,560 to 802,440
_RS11605
Position (kb) 799
800
801 Strain fitness (log2 ratio) -1
0
1
2
3 at 798.525 kb on + strand, within RPSI07_RS11590 at 798.790 kb on - strand at 798.910 kb on + strand, within RPSI07_RS11595 at 798.910 kb on + strand, within RPSI07_RS11595 at 798.911 kb on - strand, within RPSI07_RS11595 at 799.346 kb on - strand, within RPSI07_RS11595 at 799.346 kb on - strand, within RPSI07_RS11595 at 799.433 kb on - strand at 799.433 kb on - strand at 800.556 kb on - strand at 800.556 kb on - strand at 800.562 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 798,525 + RPSI07_RS11590 0.53 +2.0 798,790 - +1.7 798,910 + RPSI07_RS11595 0.12 -0.3 798,910 + RPSI07_RS11595 0.12 +0.0 798,911 - RPSI07_RS11595 0.12 -0.2 799,346 - RPSI07_RS11595 0.85 +0.2 799,346 - RPSI07_RS11595 0.85 +1.8 799,433 - -0.7 799,433 - -0.5 800,556 - +0.8 800,556 - +3.6 800,562 - -0.4
Or see this region's nucleotide sequence