Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RPSI07_RS11475 and RPSI07_RS11480 are separated by 67 nucleotides RPSI07_RS11480 and RPSI07_RS11485 are separated by 9 nucleotides RPSI07_RS11485 and RPSI07_RS11490 are separated by 24 nucleotides
RPSI07_RS11475: RPSI07_RS11475 - glutamate-5-semialdehyde dehydrogenase, at 771,154 to 772,434
_RS11475
RPSI07_RS11480: RPSI07_RS11480 - membrane protein, at 772,502 to 772,924
_RS11480
RPSI07_RS11485: RPSI07_RS11485 - class I SAM-dependent RNA methyltransferase, at 772,934 to 774,352
_RS11485
RPSI07_RS11490: RPSI07_RS11490 - response regulator, at 774,377 to 775,387
_RS11490
Position (kb) 772
773
774
775 Strain fitness (log2 ratio) -2
-1
0
1
2 at 772.006 kb on + strand, within RPSI07_RS11475 at 772.117 kb on + strand, within RPSI07_RS11475 at 772.117 kb on + strand, within RPSI07_RS11475 at 772.186 kb on + strand, within RPSI07_RS11475 at 772.186 kb on + strand, within RPSI07_RS11475 at 772.186 kb on + strand, within RPSI07_RS11475 at 772.186 kb on + strand at 772.187 kb on - strand, within RPSI07_RS11475 at 772.187 kb on - strand, within RPSI07_RS11475 at 772.225 kb on + strand, within RPSI07_RS11475 at 772.225 kb on + strand, within RPSI07_RS11475 at 772.225 kb on + strand, within RPSI07_RS11475 at 772.225 kb on + strand, within RPSI07_RS11475 at 772.226 kb on - strand, within RPSI07_RS11475 at 772.400 kb on - strand at 772.400 kb on - strand at 773.100 kb on - strand, within RPSI07_RS11485 at 773.184 kb on - strand, within RPSI07_RS11485 at 773.184 kb on - strand, within RPSI07_RS11485 at 773.184 kb on - strand, within RPSI07_RS11485 at 773.216 kb on + strand, within RPSI07_RS11485 at 773.216 kb on + strand, within RPSI07_RS11485 at 773.217 kb on - strand, within RPSI07_RS11485 at 773.217 kb on - strand, within RPSI07_RS11485 at 773.311 kb on + strand, within RPSI07_RS11485 at 773.311 kb on + strand, within RPSI07_RS11485 at 773.312 kb on - strand, within RPSI07_RS11485 at 773.312 kb on - strand, within RPSI07_RS11485 at 773.312 kb on - strand, within RPSI07_RS11485 at 773.384 kb on + strand, within RPSI07_RS11485 at 773.384 kb on + strand, within RPSI07_RS11485 at 773.385 kb on - strand, within RPSI07_RS11485 at 773.418 kb on - strand, within RPSI07_RS11485 at 773.552 kb on + strand, within RPSI07_RS11485 at 774.223 kb on + strand at 774.233 kb on + strand at 774.792 kb on + strand, within RPSI07_RS11490 at 774.858 kb on + strand, within RPSI07_RS11490 at 774.859 kb on - strand, within RPSI07_RS11490 at 774.859 kb on - strand, within RPSI07_RS11490 at 774.903 kb on + strand, within RPSI07_RS11490 at 774.904 kb on - strand, within RPSI07_RS11490 at 774.904 kb on - strand, within RPSI07_RS11490 at 775.045 kb on + strand, within RPSI07_RS11490 at 775.066 kb on - strand, within RPSI07_RS11490 at 775.320 kb on + strand at 775.321 kb on - strand at 775.321 kb on - strand at 775.321 kb on - strand at 775.321 kb on - strand at 775.321 kb on - strand at 775.350 kb on + strand at 775.350 kb on + strand at 775.350 kb on + strand at 775.351 kb on - strand at 775.351 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 772,006 + RPSI07_RS11475 0.67 -1.0 772,117 + RPSI07_RS11475 0.75 -0.8 772,117 + RPSI07_RS11475 0.75 +0.9 772,186 + RPSI07_RS11475 0.81 +1.3 772,186 + RPSI07_RS11475 0.81 -0.1 772,186 + RPSI07_RS11475 0.81 -1.5 772,186 + +2.1 772,187 - RPSI07_RS11475 0.81 +0.0 772,187 - RPSI07_RS11475 0.81 -0.9 772,225 + RPSI07_RS11475 0.84 -1.5 772,225 + RPSI07_RS11475 0.84 -0.1 772,225 + RPSI07_RS11475 0.84 -1.4 772,225 + RPSI07_RS11475 0.84 -0.0 772,226 - RPSI07_RS11475 0.84 +0.0 772,400 - -0.9 772,400 - -1.1 773,100 - RPSI07_RS11485 0.12 +1.1 773,184 - RPSI07_RS11485 0.18 +0.1 773,184 - RPSI07_RS11485 0.18 -0.6 773,184 - RPSI07_RS11485 0.18 -1.7 773,216 + RPSI07_RS11485 0.20 -1.3 773,216 + RPSI07_RS11485 0.20 +0.5 773,217 - RPSI07_RS11485 0.20 +0.7 773,217 - RPSI07_RS11485 0.20 -0.4 773,311 + RPSI07_RS11485 0.27 +0.8 773,311 + RPSI07_RS11485 0.27 +0.7 773,312 - RPSI07_RS11485 0.27 -0.3 773,312 - RPSI07_RS11485 0.27 +1.2 773,312 - RPSI07_RS11485 0.27 -0.9 773,384 + RPSI07_RS11485 0.32 -1.9 773,384 + RPSI07_RS11485 0.32 -0.5 773,385 - RPSI07_RS11485 0.32 -0.3 773,418 - RPSI07_RS11485 0.34 -0.9 773,552 + RPSI07_RS11485 0.44 +2.2 774,223 + +0.2 774,233 + +0.3 774,792 + RPSI07_RS11490 0.41 +1.0 774,858 + RPSI07_RS11490 0.48 -0.5 774,859 - RPSI07_RS11490 0.48 +0.3 774,859 - RPSI07_RS11490 0.48 +0.4 774,903 + RPSI07_RS11490 0.52 -1.1 774,904 - RPSI07_RS11490 0.52 -0.2 774,904 - RPSI07_RS11490 0.52 -1.1 775,045 + RPSI07_RS11490 0.66 -1.5 775,066 - RPSI07_RS11490 0.68 -1.7 775,320 + +2.4 775,321 - -0.0 775,321 - -0.7 775,321 - -0.6 775,321 - +1.0 775,321 - -0.1 775,350 + -0.1 775,350 + +0.9 775,350 + -0.5 775,351 - -1.4 775,351 - +0.0
Or see this region's nucleotide sequence