Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RPSI07_RS10850 and RPSI07_RS10855 overlap by 4 nucleotides RPSI07_RS10855 and RPSI07_RS10860 are separated by 13 nucleotides
RPSI07_RS10850: RPSI07_RS10850 - ABC transporter ATP-binding protein, at 631,277 to 632,296
_RS10850
RPSI07_RS10855: RPSI07_RS10855 - ABC transporter ATP-binding protein, at 632,293 to 633,357
_RS10855
RPSI07_RS10860: RPSI07_RS10860 - acetylornithine deacetylase, at 633,371 to 634,570
_RS10860
Position (kb) 632
633
634 Strain fitness (log2 ratio) -2
-1
0
1
2 at 631.989 kb on + strand, within RPSI07_RS10850 at 631.989 kb on + strand, within RPSI07_RS10850 at 631.989 kb on + strand, within RPSI07_RS10850 at 631.990 kb on - strand, within RPSI07_RS10850 at 631.990 kb on - strand, within RPSI07_RS10850 at 631.994 kb on + strand, within RPSI07_RS10850 at 632.057 kb on + strand, within RPSI07_RS10850 at 632.058 kb on - strand, within RPSI07_RS10850 at 632.058 kb on - strand, within RPSI07_RS10850 at 632.058 kb on - strand, within RPSI07_RS10850 at 632.693 kb on - strand, within RPSI07_RS10855 at 632.785 kb on + strand, within RPSI07_RS10855 at 632.786 kb on - strand, within RPSI07_RS10855 at 632.786 kb on - strand, within RPSI07_RS10855 at 633.010 kb on + strand, within RPSI07_RS10855 at 633.010 kb on + strand, within RPSI07_RS10855 at 633.010 kb on + strand, within RPSI07_RS10855 at 633.010 kb on + strand, within RPSI07_RS10855 at 633.010 kb on + strand, within RPSI07_RS10855 at 633.011 kb on - strand, within RPSI07_RS10855 at 633.073 kb on + strand, within RPSI07_RS10855 at 633.074 kb on - strand, within RPSI07_RS10855 at 633.074 kb on - strand, within RPSI07_RS10855 at 633.074 kb on - strand, within RPSI07_RS10855 at 633.074 kb on - strand, within RPSI07_RS10855 at 633.137 kb on - strand, within RPSI07_RS10855 at 633.165 kb on + strand, within RPSI07_RS10855 at 633.166 kb on - strand, within RPSI07_RS10855 at 633.190 kb on + strand, within RPSI07_RS10855 at 633.190 kb on + strand, within RPSI07_RS10855 at 633.191 kb on - strand, within RPSI07_RS10855 at 633.191 kb on - strand, within RPSI07_RS10855 at 633.191 kb on - strand, within RPSI07_RS10855 at 633.265 kb on + strand at 633.320 kb on + strand at 633.320 kb on + strand at 633.356 kb on - strand at 633.362 kb on + strand at 633.362 kb on + strand at 633.363 kb on - strand at 633.364 kb on + strand at 633.364 kb on + strand at 633.364 kb on + strand at 633.365 kb on - strand at 633.536 kb on + strand, within RPSI07_RS10860 at 633.536 kb on + strand, within RPSI07_RS10860 at 633.537 kb on + strand, within RPSI07_RS10860 at 633.537 kb on - strand, within RPSI07_RS10860 at 633.537 kb on - strand, within RPSI07_RS10860 at 633.801 kb on - strand, within RPSI07_RS10860 at 633.938 kb on + strand, within RPSI07_RS10860 at 633.938 kb on + strand, within RPSI07_RS10860 at 633.939 kb on - strand, within RPSI07_RS10860 at 633.939 kb on - strand, within RPSI07_RS10860 at 634.229 kb on + strand, within RPSI07_RS10860 at 634.230 kb on - strand, within RPSI07_RS10860
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 631,989 + RPSI07_RS10850 0.70 -1.6 631,989 + RPSI07_RS10850 0.70 +1.4 631,989 + RPSI07_RS10850 0.70 +1.2 631,990 - RPSI07_RS10850 0.70 -0.7 631,990 - RPSI07_RS10850 0.70 +0.1 631,994 + RPSI07_RS10850 0.70 +0.2 632,057 + RPSI07_RS10850 0.76 +0.1 632,058 - RPSI07_RS10850 0.77 +1.1 632,058 - RPSI07_RS10850 0.77 -1.1 632,058 - RPSI07_RS10850 0.77 +0.2 632,693 - RPSI07_RS10855 0.38 -0.5 632,785 + RPSI07_RS10855 0.46 -0.8 632,786 - RPSI07_RS10855 0.46 +0.7 632,786 - RPSI07_RS10855 0.46 +0.9 633,010 + RPSI07_RS10855 0.67 +1.8 633,010 + RPSI07_RS10855 0.67 +1.0 633,010 + RPSI07_RS10855 0.67 -0.4 633,010 + RPSI07_RS10855 0.67 -0.7 633,010 + RPSI07_RS10855 0.67 +1.5 633,011 - RPSI07_RS10855 0.67 -0.9 633,073 + RPSI07_RS10855 0.73 -0.7 633,074 - RPSI07_RS10855 0.73 -1.1 633,074 - RPSI07_RS10855 0.73 -0.4 633,074 - RPSI07_RS10855 0.73 -1.7 633,074 - RPSI07_RS10855 0.73 -0.2 633,137 - RPSI07_RS10855 0.79 +0.9 633,165 + RPSI07_RS10855 0.82 -0.9 633,166 - RPSI07_RS10855 0.82 +0.6 633,190 + RPSI07_RS10855 0.84 -1.8 633,190 + RPSI07_RS10855 0.84 -0.8 633,191 - RPSI07_RS10855 0.84 +1.4 633,191 - RPSI07_RS10855 0.84 +1.2 633,191 - RPSI07_RS10855 0.84 +2.5 633,265 + -0.3 633,320 + +0.4 633,320 + +0.1 633,356 - +1.0 633,362 + +0.7 633,362 + +0.8 633,363 - -0.3 633,364 + +0.3 633,364 + -1.4 633,364 + -1.7 633,365 - +0.7 633,536 + RPSI07_RS10860 0.14 -0.0 633,536 + RPSI07_RS10860 0.14 +0.5 633,537 + RPSI07_RS10860 0.14 +1.3 633,537 - RPSI07_RS10860 0.14 +0.9 633,537 - RPSI07_RS10860 0.14 -2.1 633,801 - RPSI07_RS10860 0.36 -0.5 633,938 + RPSI07_RS10860 0.47 +0.1 633,938 + RPSI07_RS10860 0.47 -0.0 633,939 - RPSI07_RS10860 0.47 -0.1 633,939 - RPSI07_RS10860 0.47 +2.3 634,229 + RPSI07_RS10860 0.71 -0.9 634,230 - RPSI07_RS10860 0.72 +0.2
Or see this region's nucleotide sequence