Strain Fitness in Ralstonia solanacearum PSI07 around RPSI07_RS06060

Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
1,647,046	-				-1.3
1,647,046	-				+2.0
1,647,141	+				-1.7
1,647,141	+				+0.9
1,647,141	+				-0.5
1,647,141	+				+0.7
1,647,141	+				-1.3
1,647,142	-				-0.8
1,647,142	-				-1.2
1,647,142	-				+1.6
1,647,147	+				-0.3
1,647,148	-				+0.2
1,647,232	+				-0.3
1,647,233	-				-0.2
1,647,335	+				-0.7
1,647,336	-				-0.6
1,647,336	-				-0.1
1,647,336	-				+0.2
1,647,363	+				-0.2
1,647,363	+				+0.2
1,647,363	+				-1.0
1,647,364	-				+1.4
1,647,364	-				-0.5
1,647,364	-				-0.4
1,647,781	-				+0.3
1,647,781	-				-0.9
1,647,786	+				-0.2
1,647,934	+				+0.3
1,647,935	-				-1.5
1,648,355	+				+2.0
1,648,356	-				-1.1
1,648,682	+		RPSI07_RS06060	0.11	+0.8
1,649,344	+		RPSI07_RS06060	0.20	-0.8
1,649,344	+		RPSI07_RS06060	0.20	-0.9
1,649,346	+		RPSI07_RS06060	0.20	+0.0
1,649,444	-		RPSI07_RS06060	0.22	-0.1
1,650,498	+		RPSI07_RS06060	0.36	-1.4
1,650,498	+		RPSI07_RS06060	0.36	-0.4
1,650,574	+		RPSI07_RS06060	0.37	+1.7
1,650,574	+		RPSI07_RS06060	0.37	-2.0
1,650,575	-		RPSI07_RS06060	0.37	-0.5
1,650,575	-		RPSI07_RS06060	0.37	-0.4
1,650,575	-		RPSI07_RS06060	0.37	+0.6
1,650,581	+		RPSI07_RS06060	0.37	+2.0
1,650,581	+		RPSI07_RS06060	0.37	+0.0
1,650,581	+		RPSI07_RS06060	0.37	-1.2
1,650,582	-		RPSI07_RS06060	0.37	-0.3
1,650,677	+		RPSI07_RS06060	0.38	-1.4
1,650,677	+		RPSI07_RS06060	0.38	-0.0
1,650,677	+		RPSI07_RS06060	0.38	-0.8
1,650,677	+		RPSI07_RS06060	0.38	+1.0
1,650,678	-		RPSI07_RS06060	0.38	+0.2
1,650,678	-		RPSI07_RS06060	0.38	+1.2
1,650,743	+		RPSI07_RS06060	0.39	+1.7
1,650,744	-		RPSI07_RS06060	0.39	+1.0
1,650,744	-		RPSI07_RS06060	0.39	-0.4
1,650,744	-		RPSI07_RS06060	0.39	+0.1
1,650,884	+		RPSI07_RS06060	0.41	+2.0
1,650,884	+		RPSI07_RS06060	0.41	-0.4
1,650,884	+		RPSI07_RS06060	0.41	+1.1
1,650,884	+		RPSI07_RS06060	0.41	+0.1
1,650,884	+		RPSI07_RS06060	0.41	+0.4
1,650,885	-		RPSI07_RS06060	0.41	+0.6
1,650,885	-		RPSI07_RS06060	0.41	+0.0
1,651,083	+		RPSI07_RS06060	0.44	-0.7
1,651,083	+		RPSI07_RS06060	0.44	+0.6
1,651,097	+		RPSI07_RS06060	0.44	-0.0
1,651,097	+		RPSI07_RS06060	0.44	+0.3
1,651,097	+		RPSI07_RS06060	0.44	+0.8
1,651,098	-		RPSI07_RS06060	0.44	+0.2
1,651,197	+		RPSI07_RS06060	0.45	-0.6
1,651,197	+		RPSI07_RS06060	0.45	+0.6
1,651,197	+		RPSI07_RS06060	0.45	-2.2
1,651,198	-		RPSI07_RS06060	0.45	-1.8
1,651,198	-		RPSI07_RS06060	0.45	-0.1
1,651,198	-		RPSI07_RS06060	0.45	+1.0
1,651,198	-		RPSI07_RS06060	0.45	+0.4
1,651,198	-		RPSI07_RS06060	0.45	-0.7
1,651,198	-		RPSI07_RS06060	0.45	+1.2
1,651,198	-		RPSI07_RS06060	0.45	-1.8
1,651,198	-		RPSI07_RS06060	0.45	-0.7
1,651,198	-		RPSI07_RS06060	0.45	+0.4
1,651,198	-		RPSI07_RS06060	0.45	-0.7
1,651,304	+		RPSI07_RS06060	0.47	+0.6
1,651,305	-		RPSI07_RS06060	0.47	-0.5
1,651,305	-		RPSI07_RS06060	0.47	-0.2
1,652,030	+		RPSI07_RS06060	0.57	-3.3
1,652,030	+		RPSI07_RS06060	0.57	-0.1
1,652,030	-		RPSI07_RS06060	0.57	-1.0
1,652,031	-		RPSI07_RS06060	0.57	-1.7
1,652,031	-		RPSI07_RS06060	0.57	-0.3
1,652,171	+		RPSI07_RS06060	0.59	-0.3
1,652,273	+		RPSI07_RS06060	0.60	-0.8
1,652,273	+		RPSI07_RS06060	0.60	+0.7
1,652,273	+		RPSI07_RS06060	0.60	+1.0
1,652,273	+		RPSI07_RS06060	0.60	+0.2
1,652,274	-		RPSI07_RS06060	0.60	-0.7
1,652,274	-		RPSI07_RS06060	0.60	+0.4
1,652,279	+		RPSI07_RS06060	0.60	+0.0
1,652,279	+		RPSI07_RS06060	0.60	+0.6
1,652,279	+		RPSI07_RS06060	0.60	+0.5
1,652,279	+		RPSI07_RS06060	0.60	+0.3
1,652,279	+		RPSI07_RS06060	0.60	-0.1
1,652,280	-		RPSI07_RS06060	0.60	-1.6
1,652,280	-		RPSI07_RS06060	0.60	-0.7
1,652,280	-		RPSI07_RS06060	0.60	+0.7
1,652,592	+		RPSI07_RS06060	0.64	-0.5
1,652,592	+		RPSI07_RS06060	0.64	+1.4
1,652,592	+		RPSI07_RS06060	0.64	+1.2
1,652,592	+		RPSI07_RS06060	0.64	+1.3
1,652,593	-		RPSI07_RS06060	0.64	+0.5
1,652,593	-		RPSI07_RS06060	0.64	-0.6
1,652,593	-		RPSI07_RS06060	0.64	+0.0
1,652,593	-		RPSI07_RS06060	0.64	-0.8
1,652,601	-		RPSI07_RS06060	0.65	+1.2
1,652,601	-		RPSI07_RS06060	0.65	-0.4
1,652,797	+		RPSI07_RS06060	0.67	-0.7
1,652,797	+		RPSI07_RS06060	0.67	-1.3
1,652,798	-		RPSI07_RS06060	0.67	-0.3
1,652,844	+		RPSI07_RS06060	0.68	-0.6
1,652,844	+		RPSI07_RS06060	0.68	+2.0
1,652,844	+		RPSI07_RS06060	0.68	+1.2
1,652,844	+		RPSI07_RS06060	0.68	-1.5
1,652,844	+		RPSI07_RS06060	0.68	+0.5
1,652,845	-		RPSI07_RS06060	0.68	-0.7
1,652,845	-		RPSI07_RS06060	0.68	+2.7
1,652,873	+		RPSI07_RS06060	0.68	+0.1
1,652,873	+		RPSI07_RS06060	0.68	+0.1
1,652,873	+		RPSI07_RS06060	0.68	+0.5
1,652,874	-		RPSI07_RS06060	0.68	+0.3
1,652,874	-		RPSI07_RS06060	0.68	+0.3
1,653,121	+		RPSI07_RS06060	0.72	-2.2
1,653,121	+		RPSI07_RS06060	0.72	-0.6
1,653,122	-		RPSI07_RS06060	0.72	+1.3
1,653,122	-		RPSI07_RS06060	0.72	-0.5
1,653,171	-		RPSI07_RS06060	0.72	+1.3
1,653,221	+		RPSI07_RS06060	0.73	-0.7
1,653,222	-		RPSI07_RS06060	0.73	+0.0
1,653,311	+		RPSI07_RS06060	0.74	+0.3
1,653,311	+		RPSI07_RS06060	0.74	+0.9
1,653,311	+		RPSI07_RS06060	0.74	+0.0
1,653,311	+		RPSI07_RS06060	0.74	+0.1
1,653,311	+		RPSI07_RS06060	0.74	-1.5
1,653,312	-		RPSI07_RS06060	0.74	-0.4
1,653,312	-		RPSI07_RS06060	0.74	-1.0
1,653,312	-		RPSI07_RS06060	0.74	-1.2
1,653,312	-		RPSI07_RS06060	0.74	+0.1
1,653,312	-		RPSI07_RS06060	0.74	-1.0
1,653,410	+		RPSI07_RS06060	0.76	-0.2
1,653,410	+		RPSI07_RS06060	0.76	-0.4
1,653,410	+		RPSI07_RS06060	0.76	+0.5
1,653,466	-		RPSI07_RS06060	0.76	-0.1
1,653,479	+		RPSI07_RS06060	0.76	-0.1
1,653,480	-		RPSI07_RS06060	0.76	-0.5
1,653,538	+		RPSI07_RS06060	0.77	-1.6
1,653,538	+		RPSI07_RS06060	0.77	+0.4
1,653,539	-		RPSI07_RS06060	0.77	-1.0
1,653,539	-		RPSI07_RS06060	0.77	+0.9
1,653,539	-		RPSI07_RS06060	0.77	-0.4
1,653,688	+		RPSI07_RS06060	0.79	+0.7
1,653,930	-		RPSI07_RS06060	0.83	+0.3
1,653,931	+		RPSI07_RS06060	0.83	-0.7
1,653,932	-		RPSI07_RS06060	0.83	+0.7
1,653,932	-		RPSI07_RS06060	0.83	+0.0
1,653,932	-		RPSI07_RS06060	0.83	+0.3
1,653,932	-		RPSI07_RS06060	0.83	+1.0
1,654,010	-		RPSI07_RS06060	0.84	-0.4
1,654,119	-		RPSI07_RS06060	0.85	-0.3
1,654,130	+		RPSI07_RS06060	0.85	-0.1
1,654,130	+		RPSI07_RS06060	0.85	-0.6
1,654,130	+		RPSI07_RS06060	0.85	+0.3
1,654,130	+		RPSI07_RS06060	0.85	-0.3
1,654,130	+		RPSI07_RS06060	0.85	+0.2
1,654,131	-		RPSI07_RS06060	0.85	+0.7
1,654,639	+				-0.5
1,654,640	-				+0.7
1,654,682	+				-0.2
1,654,682	+				-1.4
1,654,682	+				-0.1
1,654,682	+				-0.7
1,654,683	-				-1.0
1,654,683	-				-0.1
1,654,683	-				-1.0
1,654,683	-				-0.2
1,654,683	-				+0.0
1,654,683	-				+0.6
1,654,683	-				-0.4
1,654,760	+				+0.6
1,654,760	+				+2.2
1,654,761	-				+1.2
1,654,761	-				-1.2
1,654,772	-				+0.3
1,654,772	-				+1.2
1,654,787	+				-0.0
1,654,953	-				-0.5
1,655,037	+				-1.0
1,655,037	+				-1.0
1,655,038	-				-1.1
1,655,207	+				-1.0
1,655,389	+				-2.0
1,655,389	+				-1.3
1,655,390	-				-1.3
1,655,390	-				+0.1
1,655,390	-				+0.1
1,655,434	+		RPSI07_RS06065	0.13	-0.7
1,655,434	+		RPSI07_RS06065	0.13	+0.3
1,655,434	+		RPSI07_RS06065	0.13	+0.7
1,655,434	+		RPSI07_RS06065	0.13	-1.0
1,655,434	+				+0.7
1,655,434	+		RPSI07_RS06065	0.13	-0.0
1,655,434	+		RPSI07_RS06065	0.13	+1.1
1,655,434	+		RPSI07_RS06065	0.13	-0.7
1,655,434	+		RPSI07_RS06065	0.13	-2.2
1,655,434	+		RPSI07_RS06065	0.13	+0.7
1,655,434	+		RPSI07_RS06065	0.13	-0.7
1,655,435	-		RPSI07_RS06065	0.13	-0.3
1,655,435	-		RPSI07_RS06065	0.13	+0.2
1,655,435	-		RPSI07_RS06065	0.13	-0.4
1,655,435	-		RPSI07_RS06065	0.13	-0.3
1,655,435	-		RPSI07_RS06065	0.13	-0.6
1,655,435	-		RPSI07_RS06065	0.13	+1.7
1,655,435	-		RPSI07_RS06065	0.13	-1.1
1,655,477	-		RPSI07_RS06065	0.22	+1.6
1,655,479	+		RPSI07_RS06065	0.22	-0.5
1,655,491	+		RPSI07_RS06065	0.25	+1.6
1,655,491	+		RPSI07_RS06065	0.25	-0.0
1,655,492	-		RPSI07_RS06065	0.25	+1.2
1,655,492	-		RPSI07_RS06065	0.25	+1.4
1,655,492	-		RPSI07_RS06065	0.25	-2.4
1,655,494	+		RPSI07_RS06065	0.26	-0.2
1,655,494	+		RPSI07_RS06065	0.26	-0.2
1,655,494	+		RPSI07_RS06065	0.26	+1.2
1,655,494	+		RPSI07_RS06065	0.26	+1.6
1,655,495	-		RPSI07_RS06065	0.26	+1.0
1,655,549	-		RPSI07_RS06065	0.37	-1.7
1,655,549	-		RPSI07_RS06065	0.37	+0.6
1,655,549	-		RPSI07_RS06065	0.37	+0.4
1,655,549	-		RPSI07_RS06065	0.37	-0.6
1,655,549	-		RPSI07_RS06065	0.37	-0.3
1,655,607	-		RPSI07_RS06065	0.49	+0.4
1,655,607	-		RPSI07_RS06065	0.49	-0.6
1,655,623	+		RPSI07_RS06065	0.53	+2.0
1,655,766	+		RPSI07_RS06065	0.83	-0.7
1,655,766	+		RPSI07_RS06065	0.83	-0.6
1,655,767	-		RPSI07_RS06065	0.83	+0.4
1,655,767	-		RPSI07_RS06065	0.83	+1.5
1,655,767	-		RPSI07_RS06065	0.83	+1.0
1,656,064	+				-1.1
1,656,065	-				-1.2
1,656,065	-				-0.2
1,656,095	-				+1.8
1,656,126	+				+2.4
1,656,126	+				-0.2
1,656,126	+				-1.7
1,656,127	-				+0.7
1,656,132	-				-1.0
1,656,132	-				-1.4
1,656,132	-				+0.4