Strain Fitness in Ralstonia solanacearum PSI07 around RPSI07_RS02840

Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRPSI07_RS02830 and RPSI07_RS02835 are separated by 12 nucleotidesRPSI07_RS02835 and RPSI07_RS02840 overlap by 4 nucleotidesRPSI07_RS02840 and RPSI07_RS02845 are separated by 1 nucleotidesRPSI07_RS02845 and RPSI07_RS02850 are separated by 12 nucleotides RPSI07_RS02830: RPSI07_RS02830 - acetyl-CoA carboxylase biotin carboxylase subunit, at 786,727 to 788,094 _RS02830 RPSI07_RS02835: RPSI07_RS02835 - allophanate hydrolase, at 788,107 to 788,766 _RS02835 RPSI07_RS02840: RPSI07_RS02840 - hypothetical protein, at 788,763 to 789,755 _RS02840 RPSI07_RS02845: RPSI07_RS02845 - hypothetical protein, at 789,757 to 790,164 _RS02845 RPSI07_RS02850: RPSI07_RS02850 - hypothetical protein, at 790,177 to 790,947 _RS02850 Position (kb) 788 789 790Strain fitness (log2 ratio) -2 -1 0 1at 787.813 kb on + strand, within RPSI07_RS02830at 787.814 kb on - strand, within RPSI07_RS02830at 788.127 kb on + strandat 788.127 kb on + strandat 788.128 kb on - strandat 788.128 kb on - strandat 788.128 kb on - strandat 788.392 kb on + strand, within RPSI07_RS02835at 788.393 kb on - strand, within RPSI07_RS02835at 788.415 kb on + strand, within RPSI07_RS02835at 788.415 kb on + strand, within RPSI07_RS02835at 788.415 kb on + strand, within RPSI07_RS02835at 788.416 kb on - strand, within RPSI07_RS02835at 788.416 kb on - strand, within RPSI07_RS02835at 788.416 kb on - strand, within RPSI07_RS02835at 788.486 kb on - strand, within RPSI07_RS02835at 788.486 kb on - strand, within RPSI07_RS02835at 788.486 kb on - strand, within RPSI07_RS02835at 788.518 kb on + strand, within RPSI07_RS02835at 788.519 kb on - strand, within RPSI07_RS02835at 788.524 kb on + strand, within RPSI07_RS02835at 788.524 kb on + strand, within RPSI07_RS02835at 788.525 kb on - strand, within RPSI07_RS02835at 788.525 kb on - strand, within RPSI07_RS02835at 788.686 kb on + strand, within RPSI07_RS02835at 789.109 kb on - strand, within RPSI07_RS02840at 789.109 kb on - strand, within RPSI07_RS02840at 789.109 kb on - strand, within RPSI07_RS02840at 789.161 kb on + strand, within RPSI07_RS02840at 789.351 kb on + strand, within RPSI07_RS02840at 789.360 kb on + strand, within RPSI07_RS02840at 789.360 kb on + strand, within RPSI07_RS02840at 789.360 kb on + strand, within RPSI07_RS02840at 789.360 kb on + strand, within RPSI07_RS02840at 789.361 kb on - strand, within RPSI07_RS02840at 789.805 kb on + strand, within RPSI07_RS02845at 790.100 kb on + strand, within RPSI07_RS02845at 790.100 kb on + strand, within RPSI07_RS02845at 790.100 kb on + strand, within RPSI07_RS02845at 790.100 kb on + strand, within RPSI07_RS02845at 790.100 kb on + strand, within RPSI07_RS02845at 790.100 kb on + strand, within RPSI07_RS02845at 790.100 kb on + strand, within RPSI07_RS02845at 790.100 kb on + strand, within RPSI07_RS02845at 790.100 kb on + strand, within RPSI07_RS02845at 790.101 kb on - strand, within RPSI07_RS02845at 790.101 kb on - strand, within RPSI07_RS02845at 790.101 kb on - strand, within RPSI07_RS02845at 790.101 kb on - strand, within RPSI07_RS02845at 790.101 kb on - strand, within RPSI07_RS02845at 790.101 kb on - strand, within RPSI07_RS02845at 790.101 kb on - strand, within RPSI07_RS02845at 790.101 kb on - strand, within RPSI07_RS02845at 790.101 kb on - strand, within RPSI07_RS02845at 790.213 kb on + strandat 790.213 kb on + strandat 790.213 kb on + strandat 790.214 kb on - strandat 790.214 kb on - strandat 790.441 kb on + strand, within RPSI07_RS02850at 790.442 kb on - strand, within RPSI07_RS02850at 790.442 kb on - strand, within RPSI07_RS02850at 790.442 kb on - strand, within RPSI07_RS02850at 790.442 kb on - strand, within RPSI07_RS02850at 790.442 kb on - strand, within RPSI07_RS02850at 790.442 kb on - strand, within RPSI07_RS02850at 790.553 kb on - strand, within RPSI07_RS02850at 790.596 kb on + strand, within RPSI07_RS02850at 790.596 kb on + strand, within RPSI07_RS02850at 790.597 kb on - strand, within RPSI07_RS02850at 790.597 kb on - strand, within RPSI07_RS02850

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
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787,813 + RPSI07_RS02830 0.79 -0.0
787,814 - RPSI07_RS02830 0.79 +0.2
788,127 + -0.1
788,127 + -1.5
788,128 - -1.2
788,128 - -0.7
788,128 - -0.6
788,392 + RPSI07_RS02835 0.43 -1.2
788,393 - RPSI07_RS02835 0.43 +0.7
788,415 + RPSI07_RS02835 0.47 -0.2
788,415 + RPSI07_RS02835 0.47 +0.0
788,415 + RPSI07_RS02835 0.47 -1.8
788,416 - RPSI07_RS02835 0.47 +1.7
788,416 - RPSI07_RS02835 0.47 +1.2
788,416 - RPSI07_RS02835 0.47 -0.2
788,486 - RPSI07_RS02835 0.57 +0.2
788,486 - RPSI07_RS02835 0.57 -1.1
788,486 - RPSI07_RS02835 0.57 +0.2
788,518 + RPSI07_RS02835 0.62 +0.2
788,519 - RPSI07_RS02835 0.62 -0.5
788,524 + RPSI07_RS02835 0.63 +0.2
788,524 + RPSI07_RS02835 0.63 -0.3
788,525 - RPSI07_RS02835 0.63 -0.4
788,525 - RPSI07_RS02835 0.63 -1.6
788,686 + RPSI07_RS02835 0.88 -0.1
789,109 - RPSI07_RS02840 0.35 +0.7
789,109 - RPSI07_RS02840 0.35 -2.5
789,109 - RPSI07_RS02840 0.35 +0.8
789,161 + RPSI07_RS02840 0.40 -1.1
789,351 + RPSI07_RS02840 0.59 -0.8
789,360 + RPSI07_RS02840 0.60 +0.7
789,360 + RPSI07_RS02840 0.60 +0.4
789,360 + RPSI07_RS02840 0.60 -0.3
789,360 + RPSI07_RS02840 0.60 +0.1
789,361 - RPSI07_RS02840 0.60 -0.0
789,805 + RPSI07_RS02845 0.12 +1.0
790,100 + RPSI07_RS02845 0.84 +1.0
790,100 + RPSI07_RS02845 0.84 +0.9
790,100 + RPSI07_RS02845 0.84 -1.9
790,100 + RPSI07_RS02845 0.84 -0.6
790,100 + RPSI07_RS02845 0.84 -0.5
790,100 + RPSI07_RS02845 0.84 +0.5
790,100 + RPSI07_RS02845 0.84 -1.2
790,100 + RPSI07_RS02845 0.84 -1.3
790,100 + RPSI07_RS02845 0.84 -0.0
790,101 - RPSI07_RS02845 0.84 +0.8
790,101 - RPSI07_RS02845 0.84 +0.9
790,101 - RPSI07_RS02845 0.84 +0.1
790,101 - RPSI07_RS02845 0.84 +0.9
790,101 - RPSI07_RS02845 0.84 +0.4
790,101 - RPSI07_RS02845 0.84 +0.5
790,101 - RPSI07_RS02845 0.84 -1.5
790,101 - RPSI07_RS02845 0.84 -0.2
790,101 - RPSI07_RS02845 0.84 +0.3
790,213 + -0.6
790,213 + +1.2
790,213 + -0.6
790,214 - +0.7
790,214 - -0.5
790,441 + RPSI07_RS02850 0.34 -0.2
790,442 - RPSI07_RS02850 0.34 -0.5
790,442 - RPSI07_RS02850 0.34 -2.3
790,442 - RPSI07_RS02850 0.34 -1.0
790,442 - RPSI07_RS02850 0.34 +0.3
790,442 - RPSI07_RS02850 0.34 +0.5
790,442 - RPSI07_RS02850 0.34 -1.8
790,553 - RPSI07_RS02850 0.49 +0.4
790,596 + RPSI07_RS02850 0.54 -0.6
790,596 + RPSI07_RS02850 0.54 -0.2
790,597 - RPSI07_RS02850 0.54 -1.6
790,597 - RPSI07_RS02850 0.54 +1.5

Or see this region's nucleotide sequence