Strain Fitness in Ralstonia solanacearum PSI07 around RPSI07_RS01775

Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRPSI07_RS01765 and RPSI07_RS01770 are separated by 106 nucleotidesRPSI07_RS01770 and RPSI07_RS01775 are separated by 3 nucleotidesRPSI07_RS01775 and RPSI07_RS24215 are separated by 204 nucleotidesRPSI07_RS24215 and RPSI07_RS01785 are separated by 604 nucleotides RPSI07_RS01765: RPSI07_RS01765 - lysine transporter LysE, at 461,556 to 462,176 _RS01765 RPSI07_RS01770: RPSI07_RS01770 - LysR family transcriptional regulator, at 462,283 to 463,149 _RS01770 RPSI07_RS01775: RPSI07_RS01775 - hypothetical protein, at 463,153 to 463,428 _RS01775 RPSI07_RS24215: RPSI07_RS24215 - transposase, at 463,633 to 463,788 _RS24215 RPSI07_RS01785: RPSI07_RS01785 - KR domain-containing protein, at 464,393 to 484,660 _RS01785 Position (kb) 463 464Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 462.249 kb on + strandat 462.249 kb on + strandat 462.535 kb on - strand, within RPSI07_RS01770at 462.828 kb on + strand, within RPSI07_RS01770at 462.926 kb on - strand, within RPSI07_RS01770at 462.926 kb on - strand, within RPSI07_RS01770at 463.052 kb on - strand, within RPSI07_RS01770at 463.214 kb on + strand, within RPSI07_RS01775at 463.215 kb on - strand, within RPSI07_RS01775at 463.249 kb on + strand, within RPSI07_RS01775at 463.249 kb on + strand, within RPSI07_RS01775at 463.249 kb on + strand, within RPSI07_RS01775at 463.249 kb on + strand, within RPSI07_RS01775at 463.249 kb on + strand, within RPSI07_RS01775at 463.250 kb on - strand, within RPSI07_RS01775at 463.250 kb on - strand, within RPSI07_RS01775at 463.305 kb on - strand, within RPSI07_RS01775at 463.305 kb on - strand, within RPSI07_RS01775at 463.326 kb on + strand, within RPSI07_RS01775at 463.326 kb on + strand, within RPSI07_RS01775at 463.326 kb on + strand, within RPSI07_RS01775at 463.326 kb on + strand, within RPSI07_RS01775at 463.326 kb on + strand, within RPSI07_RS01775at 463.327 kb on - strand, within RPSI07_RS01775at 463.327 kb on - strand, within RPSI07_RS01775at 463.327 kb on - strand, within RPSI07_RS01775at 463.333 kb on + strand, within RPSI07_RS01775at 463.334 kb on - strand, within RPSI07_RS01775at 463.334 kb on - strand, within RPSI07_RS01775at 463.334 kb on - strand, within RPSI07_RS01775at 463.397 kb on + strand, within RPSI07_RS01775at 463.397 kb on + strand, within RPSI07_RS01775at 463.397 kb on + strand, within RPSI07_RS01775at 463.397 kb on + strand, within RPSI07_RS01775at 463.444 kb on - strandat 463.445 kb on + strandat 463.445 kb on + strandat 463.446 kb on - strandat 463.446 kb on - strandat 463.448 kb on - strandat 463.448 kb on - strandat 463.448 kb on - strandat 463.462 kb on + strandat 463.463 kb on - strandat 463.466 kb on + strandat 463.523 kb on - strandat 463.691 kb on + strand, within RPSI07_RS24215at 463.692 kb on - strand, within RPSI07_RS24215at 463.692 kb on - strand, within RPSI07_RS24215at 463.692 kb on - strand, within RPSI07_RS24215at 463.749 kb on + strand, within RPSI07_RS24215at 463.749 kb on + strand, within RPSI07_RS24215at 463.880 kb on + strandat 463.880 kb on + strandat 463.893 kb on + strandat 463.894 kb on - strandat 463.894 kb on - strandat 463.927 kb on + strandat 463.928 kb on - strandat 463.928 kb on - strandat 463.934 kb on - strandat 463.934 kb on - strandat 463.947 kb on - strandat 463.986 kb on - strandat 464.012 kb on - strandat 464.012 kb on - strandat 464.093 kb on - strandat 464.183 kb on + strandat 464.247 kb on + strandat 464.392 kb on + strandat 464.392 kb on + strandat 464.392 kb on + strandat 464.392 kb on + strandat 464.392 kb on + strandat 464.392 kb on + strandat 464.392 kb on + strandat 464.392 kb on + strandat 464.393 kb on - strandat 464.393 kb on - strandat 464.393 kb on - strandat 464.393 kb on - strandat 464.393 kb on - strandat 464.393 kb on - strandat 464.428 kb on + strandat 464.428 kb on + strandat 464.428 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
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462,249 + -2.1
462,249 + -1.0
462,535 - RPSI07_RS01770 0.29 +0.9
462,828 + RPSI07_RS01770 0.63 -1.1
462,926 - RPSI07_RS01770 0.74 +1.2
462,926 - RPSI07_RS01770 0.74 +1.0
463,052 - RPSI07_RS01770 0.89 -0.1
463,214 + RPSI07_RS01775 0.22 +0.1
463,215 - RPSI07_RS01775 0.22 +2.8
463,249 + RPSI07_RS01775 0.35 +1.7
463,249 + RPSI07_RS01775 0.35 -0.2
463,249 + RPSI07_RS01775 0.35 -0.9
463,249 + RPSI07_RS01775 0.35 +0.6
463,249 + RPSI07_RS01775 0.35 -0.1
463,250 - RPSI07_RS01775 0.35 -0.8
463,250 - RPSI07_RS01775 0.35 -0.6
463,305 - RPSI07_RS01775 0.55 -0.8
463,305 - RPSI07_RS01775 0.55 +0.2
463,326 + RPSI07_RS01775 0.63 +0.2
463,326 + RPSI07_RS01775 0.63 -0.3
463,326 + RPSI07_RS01775 0.63 +0.1
463,326 + RPSI07_RS01775 0.63 -1.5
463,326 + RPSI07_RS01775 0.63 +0.3
463,327 - RPSI07_RS01775 0.63 -0.4
463,327 - RPSI07_RS01775 0.63 +0.1
463,327 - RPSI07_RS01775 0.63 -0.1
463,333 + RPSI07_RS01775 0.65 +0.5
463,334 - RPSI07_RS01775 0.66 -0.7
463,334 - RPSI07_RS01775 0.66 -2.3
463,334 - RPSI07_RS01775 0.66 +0.5
463,397 + RPSI07_RS01775 0.88 +1.3
463,397 + RPSI07_RS01775 0.88 -0.8
463,397 + RPSI07_RS01775 0.88 -0.3
463,397 + RPSI07_RS01775 0.88 -0.4
463,444 - +0.6
463,445 + +0.2
463,445 + +0.5
463,446 - -1.0
463,446 - -0.3
463,448 - +2.4
463,448 - +0.5
463,448 - +1.2
463,462 + -0.1
463,463 - +1.3
463,466 + +0.7
463,523 - +2.0
463,691 + RPSI07_RS24215 0.37 -1.5
463,692 - RPSI07_RS24215 0.38 +1.8
463,692 - RPSI07_RS24215 0.38 +1.4
463,692 - RPSI07_RS24215 0.38 -0.1
463,749 + RPSI07_RS24215 0.74 +0.1
463,749 + RPSI07_RS24215 0.74 -0.4
463,880 + -0.8
463,880 + +1.1
463,893 + +0.6
463,894 - -0.9
463,894 - +0.3
463,927 + -0.1
463,928 - -0.6
463,928 - -0.1
463,934 - -1.2
463,934 - -0.9
463,947 - +1.1
463,986 - +1.7
464,012 - +0.1
464,012 - -0.6
464,093 - -0.1
464,183 + -1.2
464,247 + -2.8
464,392 + -1.4
464,392 + +0.2
464,392 + +0.3
464,392 + -0.2
464,392 + -0.9
464,392 + -2.3
464,392 + -0.8
464,392 + -0.1
464,393 - +0.3
464,393 - +0.4
464,393 - -1.2
464,393 - -0.5
464,393 - +1.8
464,393 - +3.4
464,428 + +0.6
464,428 + +1.3
464,428 + -0.3

Or see this region's nucleotide sequence