Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RPSI07_RS01325 and RPSI07_RS01330 are separated by 22 nucleotides RPSI07_RS01330 and RPSI07_RS01335 are separated by 114 nucleotides RPSI07_RS01335 and RPSI07_RS01340 overlap by 1 nucleotides
RPSI07_RS01325: RPSI07_RS01325 - (2Fe-2S)-binding protein, at 365,926 to 366,384
_RS01325
RPSI07_RS01330: RPSI07_RS01330 - xanthine dehydrogenase family protein molybdopterin-binding subunit, at 366,407 to 368,656
_RS01330
RPSI07_RS01335: RPSI07_RS01335 - organic hydroperoxide resistance protein, at 368,771 to 369,205
_RS01335
RPSI07_RS01340: RPSI07_RS01340 - nucleotidyltransferase family protein, at 369,205 to 369,864
_RS01340
Position (kb) 366
367
368
369 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 365.412 kb on + strand at 365.412 kb on + strand at 365.412 kb on + strand at 365.413 kb on - strand at 365.413 kb on - strand at 365.413 kb on - strand at 365.415 kb on + strand at 365.415 kb on + strand at 365.415 kb on + strand at 365.415 kb on + strand at 365.415 kb on + strand at 365.415 kb on + strand at 365.415 kb on + strand at 365.415 kb on + strand at 365.416 kb on - strand at 365.416 kb on - strand at 365.421 kb on + strand at 365.422 kb on - strand at 365.433 kb on + strand at 365.486 kb on + strand at 365.487 kb on - strand at 365.509 kb on + strand at 365.509 kb on + strand at 365.659 kb on + strand at 365.660 kb on - strand at 365.660 kb on - strand at 365.837 kb on + strand at 365.838 kb on - strand at 365.838 kb on - strand at 365.838 kb on - strand at 365.840 kb on + strand at 365.840 kb on + strand at 365.840 kb on + strand at 365.840 kb on + strand at 365.840 kb on + strand at 365.841 kb on - strand at 365.841 kb on - strand at 365.841 kb on - strand at 365.841 kb on - strand at 365.841 kb on - strand at 365.883 kb on + strand at 365.883 kb on + strand at 365.884 kb on - strand at 365.915 kb on - strand at 365.940 kb on + strand at 365.940 kb on + strand at 365.941 kb on - strand at 366.334 kb on + strand, within RPSI07_RS01325 at 366.334 kb on + strand, within RPSI07_RS01325 at 366.334 kb on + strand, within RPSI07_RS01325 at 366.334 kb on + strand, within RPSI07_RS01325 at 366.334 kb on + strand, within RPSI07_RS01325 at 366.334 kb on + strand, within RPSI07_RS01325 at 366.335 kb on - strand, within RPSI07_RS01325 at 366.335 kb on - strand, within RPSI07_RS01325 at 366.335 kb on - strand, within RPSI07_RS01325 at 366.335 kb on - strand, within RPSI07_RS01325 at 366.383 kb on - strand at 366.383 kb on - strand at 366.689 kb on - strand, within RPSI07_RS01330 at 366.689 kb on - strand, within RPSI07_RS01330 at 366.689 kb on - strand, within RPSI07_RS01330 at 366.689 kb on - strand, within RPSI07_RS01330 at 366.773 kb on + strand, within RPSI07_RS01330 at 366.774 kb on - strand, within RPSI07_RS01330 at 366.842 kb on + strand, within RPSI07_RS01330 at 366.843 kb on - strand, within RPSI07_RS01330 at 366.968 kb on + strand, within RPSI07_RS01330 at 366.968 kb on + strand, within RPSI07_RS01330 at 366.968 kb on + strand, within RPSI07_RS01330 at 366.969 kb on - strand, within RPSI07_RS01330 at 366.969 kb on - strand, within RPSI07_RS01330 at 366.969 kb on - strand, within RPSI07_RS01330 at 367.132 kb on + strand, within RPSI07_RS01330 at 367.133 kb on - strand, within RPSI07_RS01330 at 367.133 kb on - strand, within RPSI07_RS01330 at 367.134 kb on + strand, within RPSI07_RS01330 at 367.187 kb on + strand, within RPSI07_RS01330 at 367.187 kb on + strand, within RPSI07_RS01330 at 367.187 kb on + strand, within RPSI07_RS01330 at 367.376 kb on + strand, within RPSI07_RS01330 at 367.376 kb on + strand, within RPSI07_RS01330 at 367.376 kb on + strand, within RPSI07_RS01330 at 367.376 kb on + strand, within RPSI07_RS01330 at 367.376 kb on + strand, within RPSI07_RS01330 at 367.377 kb on - strand, within RPSI07_RS01330 at 367.377 kb on - strand, within RPSI07_RS01330 at 367.377 kb on - strand, within RPSI07_RS01330 at 367.377 kb on - strand, within RPSI07_RS01330 at 367.466 kb on + strand, within RPSI07_RS01330 at 367.466 kb on + strand, within RPSI07_RS01330 at 367.467 kb on - strand, within RPSI07_RS01330 at 367.467 kb on - strand, within RPSI07_RS01330 at 367.478 kb on + strand, within RPSI07_RS01330 at 367.479 kb on - strand, within RPSI07_RS01330 at 367.479 kb on - strand, within RPSI07_RS01330 at 367.479 kb on - strand, within RPSI07_RS01330 at 367.697 kb on + strand at 367.697 kb on + strand, within RPSI07_RS01330 at 367.697 kb on + strand, within RPSI07_RS01330 at 367.697 kb on + strand, within RPSI07_RS01330 at 367.698 kb on - strand, within RPSI07_RS01330 at 367.698 kb on - strand, within RPSI07_RS01330 at 367.724 kb on - strand, within RPSI07_RS01330 at 367.799 kb on + strand, within RPSI07_RS01330 at 367.799 kb on + strand, within RPSI07_RS01330 at 367.834 kb on - strand, within RPSI07_RS01330 at 367.919 kb on + strand, within RPSI07_RS01330 at 367.919 kb on + strand, within RPSI07_RS01330 at 367.919 kb on + strand, within RPSI07_RS01330 at 367.976 kb on + strand, within RPSI07_RS01330 at 367.977 kb on - strand, within RPSI07_RS01330 at 367.977 kb on - strand at 368.053 kb on + strand, within RPSI07_RS01330 at 368.054 kb on - strand, within RPSI07_RS01330 at 368.126 kb on + strand, within RPSI07_RS01330 at 368.204 kb on + strand, within RPSI07_RS01330 at 368.249 kb on + strand, within RPSI07_RS01330 at 368.250 kb on + strand, within RPSI07_RS01330 at 368.250 kb on + strand, within RPSI07_RS01330 at 368.250 kb on + strand, within RPSI07_RS01330 at 368.250 kb on + strand, within RPSI07_RS01330 at 368.251 kb on - strand, within RPSI07_RS01330 at 368.251 kb on - strand, within RPSI07_RS01330 at 368.251 kb on - strand, within RPSI07_RS01330 at 368.279 kb on + strand, within RPSI07_RS01330 at 368.279 kb on + strand, within RPSI07_RS01330 at 368.279 kb on + strand, within RPSI07_RS01330 at 368.279 kb on + strand, within RPSI07_RS01330 at 368.279 kb on + strand, within RPSI07_RS01330 at 368.279 kb on + strand, within RPSI07_RS01330 at 368.279 kb on + strand, within RPSI07_RS01330 at 368.279 kb on + strand, within RPSI07_RS01330 at 368.280 kb on - strand, within RPSI07_RS01330 at 368.280 kb on - strand, within RPSI07_RS01330 at 368.280 kb on - strand, within RPSI07_RS01330 at 368.280 kb on - strand, within RPSI07_RS01330 at 368.280 kb on - strand, within RPSI07_RS01330 at 368.280 kb on - strand, within RPSI07_RS01330 at 368.654 kb on + strand at 368.789 kb on + strand at 368.789 kb on + strand at 368.789 kb on + strand at 368.789 kb on + strand at 368.789 kb on + strand at 368.790 kb on - strand at 368.790 kb on - strand at 368.830 kb on + strand, within RPSI07_RS01335 at 368.831 kb on - strand, within RPSI07_RS01335 at 368.831 kb on - strand, within RPSI07_RS01335
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 365,412 + -0.3 365,412 + -1.3 365,412 + +0.4 365,413 - -0.2 365,413 - +0.5 365,413 - +0.3 365,415 + -0.5 365,415 + +0.4 365,415 + -0.4 365,415 + +0.2 365,415 + +0.2 365,415 + -0.5 365,415 + -0.3 365,415 + +0.3 365,416 - +0.1 365,416 - +0.7 365,421 + +0.1 365,422 - +0.0 365,433 + -0.2 365,486 + -0.8 365,487 - +0.5 365,509 + -0.6 365,509 + -0.3 365,659 + -0.3 365,660 - -2.5 365,660 - -0.5 365,837 + -0.6 365,838 - -0.7 365,838 - +3.5 365,838 - +1.2 365,840 + +0.0 365,840 + +1.4 365,840 + +0.5 365,840 + -0.2 365,840 + -1.6 365,841 - -0.4 365,841 - +0.6 365,841 - -0.4 365,841 - +0.8 365,841 - +0.6 365,883 + +1.1 365,883 + -1.3 365,884 - -0.8 365,915 - +0.4 365,940 + -0.4 365,940 + -0.1 365,941 - -1.0 366,334 + RPSI07_RS01325 0.89 +0.1 366,334 + RPSI07_RS01325 0.89 -0.5 366,334 + RPSI07_RS01325 0.89 -0.0 366,334 + RPSI07_RS01325 0.89 +0.5 366,334 + RPSI07_RS01325 0.89 -1.2 366,334 + RPSI07_RS01325 0.89 -1.5 366,335 - RPSI07_RS01325 0.89 +0.2 366,335 - RPSI07_RS01325 0.89 +0.5 366,335 - RPSI07_RS01325 0.89 -0.3 366,335 - RPSI07_RS01325 0.89 -0.8 366,383 - -1.6 366,383 - +0.2 366,689 - RPSI07_RS01330 0.13 -1.5 366,689 - RPSI07_RS01330 0.13 -1.3 366,689 - RPSI07_RS01330 0.13 -1.5 366,689 - RPSI07_RS01330 0.13 -1.5 366,773 + RPSI07_RS01330 0.16 +1.1 366,774 - RPSI07_RS01330 0.16 +0.6 366,842 + RPSI07_RS01330 0.19 -0.7 366,843 - RPSI07_RS01330 0.19 -0.9 366,968 + RPSI07_RS01330 0.25 -0.2 366,968 + RPSI07_RS01330 0.25 -0.2 366,968 + RPSI07_RS01330 0.25 +0.0 366,969 - RPSI07_RS01330 0.25 -0.8 366,969 - RPSI07_RS01330 0.25 +0.2 366,969 - RPSI07_RS01330 0.25 -0.4 367,132 + RPSI07_RS01330 0.32 +0.1 367,133 - RPSI07_RS01330 0.32 -0.9 367,133 - RPSI07_RS01330 0.32 -1.3 367,134 + RPSI07_RS01330 0.32 -1.0 367,187 + RPSI07_RS01330 0.35 +0.8 367,187 + RPSI07_RS01330 0.35 -1.3 367,187 + RPSI07_RS01330 0.35 -0.6 367,376 + RPSI07_RS01330 0.43 -0.9 367,376 + RPSI07_RS01330 0.43 -2.1 367,376 + RPSI07_RS01330 0.43 -0.3 367,376 + RPSI07_RS01330 0.43 -1.8 367,376 + RPSI07_RS01330 0.43 -0.4 367,377 - RPSI07_RS01330 0.43 -0.6 367,377 - RPSI07_RS01330 0.43 -0.2 367,377 - RPSI07_RS01330 0.43 +0.2 367,377 - RPSI07_RS01330 0.43 +0.4 367,466 + RPSI07_RS01330 0.47 +0.2 367,466 + RPSI07_RS01330 0.47 +0.0 367,467 - RPSI07_RS01330 0.47 -0.1 367,467 - RPSI07_RS01330 0.47 -1.3 367,478 + RPSI07_RS01330 0.48 +0.7 367,479 - RPSI07_RS01330 0.48 -0.4 367,479 - RPSI07_RS01330 0.48 -1.0 367,479 - RPSI07_RS01330 0.48 +1.0 367,697 + +0.8 367,697 + RPSI07_RS01330 0.57 -0.4 367,697 + RPSI07_RS01330 0.57 -0.1 367,697 + RPSI07_RS01330 0.57 +0.2 367,698 - RPSI07_RS01330 0.57 -1.6 367,698 - RPSI07_RS01330 0.57 +0.7 367,724 - RPSI07_RS01330 0.59 +0.5 367,799 + RPSI07_RS01330 0.62 -0.6 367,799 + RPSI07_RS01330 0.62 -1.7 367,834 - RPSI07_RS01330 0.63 -0.8 367,919 + RPSI07_RS01330 0.67 +1.9 367,919 + RPSI07_RS01330 0.67 +0.1 367,919 + RPSI07_RS01330 0.67 +0.5 367,976 + RPSI07_RS01330 0.70 +1.1 367,977 - RPSI07_RS01330 0.70 -0.4 367,977 - +0.6 368,053 + RPSI07_RS01330 0.73 +0.1 368,054 - RPSI07_RS01330 0.73 -0.2 368,126 + RPSI07_RS01330 0.76 -0.4 368,204 + RPSI07_RS01330 0.80 -0.4 368,249 + RPSI07_RS01330 0.82 -0.5 368,250 + RPSI07_RS01330 0.82 -0.8 368,250 + RPSI07_RS01330 0.82 -0.1 368,250 + RPSI07_RS01330 0.82 -1.1 368,250 + RPSI07_RS01330 0.82 +0.9 368,251 - RPSI07_RS01330 0.82 -0.2 368,251 - RPSI07_RS01330 0.82 -0.1 368,251 - RPSI07_RS01330 0.82 -0.3 368,279 + RPSI07_RS01330 0.83 -1.0 368,279 + RPSI07_RS01330 0.83 +0.5 368,279 + RPSI07_RS01330 0.83 -2.1 368,279 + RPSI07_RS01330 0.83 -0.2 368,279 + RPSI07_RS01330 0.83 +0.1 368,279 + RPSI07_RS01330 0.83 -0.9 368,279 + RPSI07_RS01330 0.83 +0.5 368,279 + RPSI07_RS01330 0.83 +1.8 368,280 - RPSI07_RS01330 0.83 +0.3 368,280 - RPSI07_RS01330 0.83 -0.0 368,280 - RPSI07_RS01330 0.83 +0.3 368,280 - RPSI07_RS01330 0.83 +0.0 368,280 - RPSI07_RS01330 0.83 -0.9 368,280 - RPSI07_RS01330 0.83 -0.5 368,654 + +0.2 368,789 + -1.1 368,789 + -0.1 368,789 + +1.0 368,789 + +0.4 368,789 + -0.2 368,790 - +0.6 368,790 - -1.5 368,830 + RPSI07_RS01335 0.14 +1.9 368,831 - RPSI07_RS01335 0.14 -0.7 368,831 - RPSI07_RS01335 0.14 +1.6
Or see this region's nucleotide sequence