Experiment: KB with Erythromycin 6.25 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4962 and Psyr_4963 are separated by 31 nucleotides Psyr_4963 and Psyr_4964 overlap by 4 nucleotides Psyr_4964 and Psyr_4965 are separated by 155 nucleotides Psyr_4965 and Psyr_4966 are separated by 92 nucleotides
Psyr_4962: Psyr_4962 - ImcF-related:Protein of unknown function DUF1215, at 5,882,205 to 5,886,137
_4962
Psyr_4963: Psyr_4963 - hypothetical protein, at 5,886,169 to 5,887,092
_4963
Psyr_4964: Psyr_4964 - OmpA/MotB, at 5,887,089 to 5,889,581
_4964
Psyr_4965: Psyr_4965 - Protein of unknown function DUF796, at 5,889,737 to 5,890,255
_4965
Psyr_4966: Psyr_4966 - ImpA, N-terminal, at 5,890,348 to 5,891,442
_4966
Position (kb) 5887
5888
5889
5890 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5886.750 kb on + strand, within Psyr_4963 at 5886.751 kb on - strand, within Psyr_4963 at 5886.751 kb on - strand, within Psyr_4963 at 5886.964 kb on + strand, within Psyr_4963 at 5886.964 kb on + strand, within Psyr_4963 at 5886.964 kb on + strand, within Psyr_4963 at 5886.965 kb on - strand, within Psyr_4963 at 5886.965 kb on - strand, within Psyr_4963 at 5886.965 kb on - strand, within Psyr_4963 at 5886.972 kb on - strand, within Psyr_4963 at 5887.043 kb on - strand at 5887.043 kb on - strand at 5887.104 kb on + strand at 5887.105 kb on - strand at 5887.105 kb on - strand at 5887.108 kb on - strand at 5887.128 kb on + strand at 5887.135 kb on + strand at 5887.254 kb on + strand at 5887.254 kb on + strand at 5887.254 kb on + strand at 5887.254 kb on + strand at 5887.254 kb on + strand at 5887.254 kb on + strand at 5887.254 kb on + strand at 5887.254 kb on + strand at 5887.255 kb on - strand at 5887.255 kb on - strand at 5887.255 kb on - strand at 5887.255 kb on - strand at 5887.255 kb on - strand at 5887.255 kb on - strand at 5887.255 kb on - strand at 5887.255 kb on - strand at 5887.279 kb on + strand at 5887.279 kb on + strand at 5887.279 kb on + strand at 5887.279 kb on + strand at 5887.279 kb on + strand at 5887.279 kb on + strand at 5887.280 kb on - strand at 5887.280 kb on - strand at 5887.280 kb on - strand at 5887.638 kb on + strand, within Psyr_4964 at 5887.639 kb on - strand, within Psyr_4964 at 5887.851 kb on + strand, within Psyr_4964 at 5887.851 kb on + strand, within Psyr_4964 at 5887.852 kb on - strand, within Psyr_4964 at 5887.852 kb on - strand, within Psyr_4964 at 5888.019 kb on + strand, within Psyr_4964 at 5888.091 kb on + strand, within Psyr_4964 at 5888.092 kb on - strand, within Psyr_4964 at 5888.199 kb on + strand, within Psyr_4964 at 5888.199 kb on + strand, within Psyr_4964 at 5888.200 kb on - strand, within Psyr_4964 at 5888.350 kb on + strand, within Psyr_4964 at 5888.350 kb on + strand, within Psyr_4964 at 5888.351 kb on - strand, within Psyr_4964 at 5888.351 kb on - strand, within Psyr_4964 at 5888.351 kb on - strand, within Psyr_4964 at 5888.351 kb on - strand, within Psyr_4964 at 5888.382 kb on + strand, within Psyr_4964 at 5888.562 kb on + strand, within Psyr_4964 at 5888.563 kb on - strand, within Psyr_4964 at 5888.611 kb on - strand, within Psyr_4964 at 5888.613 kb on + strand, within Psyr_4964 at 5888.613 kb on + strand, within Psyr_4964 at 5888.613 kb on + strand, within Psyr_4964 at 5888.639 kb on - strand, within Psyr_4964 at 5888.673 kb on + strand, within Psyr_4964 at 5888.766 kb on + strand, within Psyr_4964 at 5888.791 kb on - strand, within Psyr_4964 at 5888.913 kb on + strand, within Psyr_4964 at 5888.913 kb on + strand, within Psyr_4964 at 5888.913 kb on + strand, within Psyr_4964 at 5888.913 kb on + strand, within Psyr_4964 at 5888.913 kb on + strand, within Psyr_4964 at 5888.913 kb on + strand, within Psyr_4964 at 5888.913 kb on + strand, within Psyr_4964 at 5888.913 kb on + strand, within Psyr_4964 at 5888.913 kb on + strand, within Psyr_4964 at 5888.913 kb on + strand, within Psyr_4964 at 5888.913 kb on + strand, within Psyr_4964 at 5888.913 kb on + strand, within Psyr_4964 at 5888.913 kb on + strand, within Psyr_4964 at 5888.914 kb on - strand, within Psyr_4964 at 5888.914 kb on - strand, within Psyr_4964 at 5888.914 kb on - strand, within Psyr_4964 at 5888.914 kb on - strand, within Psyr_4964 at 5888.914 kb on - strand, within Psyr_4964 at 5888.914 kb on - strand, within Psyr_4964 at 5888.914 kb on - strand, within Psyr_4964 at 5888.914 kb on - strand, within Psyr_4964 at 5888.914 kb on - strand, within Psyr_4964 at 5888.982 kb on + strand, within Psyr_4964 at 5889.057 kb on + strand, within Psyr_4964 at 5889.057 kb on + strand, within Psyr_4964 at 5889.063 kb on + strand, within Psyr_4964 at 5889.087 kb on + strand, within Psyr_4964 at 5889.088 kb on - strand, within Psyr_4964 at 5889.158 kb on + strand, within Psyr_4964 at 5889.158 kb on + strand, within Psyr_4964 at 5889.162 kb on + strand, within Psyr_4964 at 5889.162 kb on + strand, within Psyr_4964 at 5889.162 kb on + strand, within Psyr_4964 at 5889.162 kb on + strand, within Psyr_4964 at 5889.162 kb on + strand, within Psyr_4964 at 5889.162 kb on + strand, within Psyr_4964 at 5889.162 kb on + strand, within Psyr_4964 at 5889.163 kb on - strand, within Psyr_4964 at 5889.163 kb on - strand, within Psyr_4964 at 5889.163 kb on - strand, within Psyr_4964 at 5889.163 kb on - strand, within Psyr_4964 at 5889.163 kb on - strand, within Psyr_4964 at 5889.163 kb on - strand, within Psyr_4964 at 5889.421 kb on - strand at 5889.565 kb on + strand at 5889.565 kb on + strand at 5889.752 kb on + strand at 5889.752 kb on + strand at 5889.752 kb on + strand at 5889.752 kb on + strand at 5889.752 kb on + strand at 5889.752 kb on + strand at 5889.752 kb on + strand at 5889.752 kb on + strand at 5889.752 kb on + strand at 5889.752 kb on + strand at 5889.752 kb on + strand at 5889.753 kb on - strand at 5889.753 kb on - strand at 5889.753 kb on - strand at 5889.753 kb on - strand at 5889.753 kb on - strand at 5889.753 kb on - strand at 5889.753 kb on - strand at 5889.753 kb on - strand at 5889.753 kb on - strand at 5889.753 kb on - strand at 5889.753 kb on - strand at 5889.753 kb on - strand at 5890.028 kb on + strand, within Psyr_4965 at 5890.028 kb on + strand, within Psyr_4965 at 5890.028 kb on + strand, within Psyr_4965 at 5890.028 kb on + strand, within Psyr_4965 at 5890.170 kb on - strand, within Psyr_4965 at 5890.170 kb on - strand, within Psyr_4965 at 5890.170 kb on - strand, within Psyr_4965 at 5890.170 kb on - strand, within Psyr_4965 at 5890.245 kb on + strand at 5890.245 kb on + strand at 5890.246 kb on - strand at 5890.253 kb on + strand at 5890.254 kb on - strand at 5890.254 kb on - strand at 5890.327 kb on - strand at 5890.347 kb on + strand at 5890.347 kb on + strand at 5890.347 kb on + strand at 5890.347 kb on + strand at 5890.347 kb on + strand at 5890.348 kb on - strand at 5890.348 kb on - strand at 5890.348 kb on - strand at 5890.348 kb on - strand at 5890.348 kb on - strand at 5890.348 kb on - strand at 5890.348 kb on - strand at 5890.477 kb on + strand, within Psyr_4966 at 5890.478 kb on - strand, within Psyr_4966
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Erythromycin 6.25 ug/ml remove 5,886,750 + Psyr_4963 0.63 -0.2 5,886,751 - Psyr_4963 0.63 +1.1 5,886,751 - Psyr_4963 0.63 -0.5 5,886,964 + Psyr_4963 0.86 -2.5 5,886,964 + Psyr_4963 0.86 -0.7 5,886,964 + Psyr_4963 0.86 -0.5 5,886,965 - Psyr_4963 0.86 -1.8 5,886,965 - Psyr_4963 0.86 -0.1 5,886,965 - Psyr_4963 0.86 +0.7 5,886,972 - Psyr_4963 0.87 -0.9 5,887,043 - -0.1 5,887,043 - -0.2 5,887,104 + +0.4 5,887,105 - -2.3 5,887,105 - +0.2 5,887,108 - +0.5 5,887,128 + -0.9 5,887,135 + -0.7 5,887,254 + +0.3 5,887,254 + +0.0 5,887,254 + -0.5 5,887,254 + -0.2 5,887,254 + +0.3 5,887,254 + -0.0 5,887,254 + +0.6 5,887,254 + -1.0 5,887,255 - -2.3 5,887,255 - -0.6 5,887,255 - -0.0 5,887,255 - -1.8 5,887,255 - +1.7 5,887,255 - +0.8 5,887,255 - -1.2 5,887,255 - +0.3 5,887,279 + +0.1 5,887,279 + -1.2 5,887,279 + +0.8 5,887,279 + -0.3 5,887,279 + -0.9 5,887,279 + +0.2 5,887,280 - -0.6 5,887,280 - +0.2 5,887,280 - -0.5 5,887,638 + Psyr_4964 0.22 -2.7 5,887,639 - Psyr_4964 0.22 -0.4 5,887,851 + Psyr_4964 0.31 +0.8 5,887,851 + Psyr_4964 0.31 -0.6 5,887,852 - Psyr_4964 0.31 -1.3 5,887,852 - Psyr_4964 0.31 -0.1 5,888,019 + Psyr_4964 0.37 -0.8 5,888,091 + Psyr_4964 0.40 -0.3 5,888,092 - Psyr_4964 0.40 +1.4 5,888,199 + Psyr_4964 0.45 -0.5 5,888,199 + Psyr_4964 0.45 +0.7 5,888,200 - Psyr_4964 0.45 +0.0 5,888,350 + Psyr_4964 0.51 +0.1 5,888,350 + Psyr_4964 0.51 -1.6 5,888,351 - Psyr_4964 0.51 -1.3 5,888,351 - Psyr_4964 0.51 -0.3 5,888,351 - Psyr_4964 0.51 -0.2 5,888,351 - Psyr_4964 0.51 +0.3 5,888,382 + Psyr_4964 0.52 -0.2 5,888,562 + Psyr_4964 0.59 +0.5 5,888,563 - Psyr_4964 0.59 +0.1 5,888,611 - Psyr_4964 0.61 +1.0 5,888,613 + Psyr_4964 0.61 -0.7 5,888,613 + Psyr_4964 0.61 -0.6 5,888,613 + Psyr_4964 0.61 -0.1 5,888,639 - Psyr_4964 0.62 +2.1 5,888,673 + Psyr_4964 0.64 +0.1 5,888,766 + Psyr_4964 0.67 +0.6 5,888,791 - Psyr_4964 0.68 -1.9 5,888,913 + Psyr_4964 0.73 -0.9 5,888,913 + Psyr_4964 0.73 -1.1 5,888,913 + Psyr_4964 0.73 +1.1 5,888,913 + Psyr_4964 0.73 -0.8 5,888,913 + Psyr_4964 0.73 -0.3 5,888,913 + Psyr_4964 0.73 -0.8 5,888,913 + Psyr_4964 0.73 -1.2 5,888,913 + Psyr_4964 0.73 +0.5 5,888,913 + Psyr_4964 0.73 -0.4 5,888,913 + Psyr_4964 0.73 -0.4 5,888,913 + Psyr_4964 0.73 -2.8 5,888,913 + Psyr_4964 0.73 -1.4 5,888,913 + Psyr_4964 0.73 -1.5 5,888,914 - Psyr_4964 0.73 +0.5 5,888,914 - Psyr_4964 0.73 +0.7 5,888,914 - Psyr_4964 0.73 +1.3 5,888,914 - Psyr_4964 0.73 +0.4 5,888,914 - Psyr_4964 0.73 -0.2 5,888,914 - Psyr_4964 0.73 -0.2 5,888,914 - Psyr_4964 0.73 +1.6 5,888,914 - Psyr_4964 0.73 +0.9 5,888,914 - Psyr_4964 0.73 +1.0 5,888,982 + Psyr_4964 0.76 +0.6 5,889,057 + Psyr_4964 0.79 -1.3 5,889,057 + Psyr_4964 0.79 -1.7 5,889,063 + Psyr_4964 0.79 +0.9 5,889,087 + Psyr_4964 0.80 -0.2 5,889,088 - Psyr_4964 0.80 +0.4 5,889,158 + Psyr_4964 0.83 +0.6 5,889,158 + Psyr_4964 0.83 -0.5 5,889,162 + Psyr_4964 0.83 -1.0 5,889,162 + Psyr_4964 0.83 +0.1 5,889,162 + Psyr_4964 0.83 +0.2 5,889,162 + Psyr_4964 0.83 -0.0 5,889,162 + Psyr_4964 0.83 -1.0 5,889,162 + Psyr_4964 0.83 -0.3 5,889,162 + Psyr_4964 0.83 -0.1 5,889,163 - Psyr_4964 0.83 -0.3 5,889,163 - Psyr_4964 0.83 -0.9 5,889,163 - Psyr_4964 0.83 -0.3 5,889,163 - Psyr_4964 0.83 -0.6 5,889,163 - Psyr_4964 0.83 -0.7 5,889,163 - Psyr_4964 0.83 +0.7 5,889,421 - -0.9 5,889,565 + -0.8 5,889,565 + -0.5 5,889,752 + +1.5 5,889,752 + -0.1 5,889,752 + +0.4 5,889,752 + +1.6 5,889,752 + +0.4 5,889,752 + +1.2 5,889,752 + +0.3 5,889,752 + -0.9 5,889,752 + +0.5 5,889,752 + +0.6 5,889,752 + -1.0 5,889,753 - -0.9 5,889,753 - -0.8 5,889,753 - -1.0 5,889,753 - +0.1 5,889,753 - -0.2 5,889,753 - -0.4 5,889,753 - +0.9 5,889,753 - -0.7 5,889,753 - +0.7 5,889,753 - +0.1 5,889,753 - +0.5 5,889,753 - +1.3 5,890,028 + Psyr_4965 0.56 +2.3 5,890,028 + Psyr_4965 0.56 +0.5 5,890,028 + Psyr_4965 0.56 -0.4 5,890,028 + Psyr_4965 0.56 +0.1 5,890,170 - Psyr_4965 0.83 +0.2 5,890,170 - Psyr_4965 0.83 +0.3 5,890,170 - Psyr_4965 0.83 -0.2 5,890,170 - Psyr_4965 0.83 -0.5 5,890,245 + +0.7 5,890,245 + -1.2 5,890,246 - +0.3 5,890,253 + -0.4 5,890,254 - -0.2 5,890,254 - -0.1 5,890,327 - +0.1 5,890,347 + -0.9 5,890,347 + +0.6 5,890,347 + -0.2 5,890,347 + -0.9 5,890,347 + -0.1 5,890,348 - -1.2 5,890,348 - +0.2 5,890,348 - +0.1 5,890,348 - +0.4 5,890,348 - -0.9 5,890,348 - -0.1 5,890,348 - +0.1 5,890,477 + Psyr_4966 0.12 +0.9 5,890,478 - Psyr_4966 0.12 -0.4
Or see this region's nucleotide sequence