Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_4207

Experiment: KB with Erythromycin 6.25 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4206 and Psyr_4207 are separated by 15 nucleotidesPsyr_4207 and Psyr_4208 are separated by 391 nucleotides Psyr_4206: Psyr_4206 - GGDEF domain protein, at 5,008,801 to 5,009,886 _4206 Psyr_4207: Psyr_4207 - GCN5-related N-acetyltransferase, at 5,009,902 to 5,010,333 _4207 Psyr_4208: Psyr_4208 - heme catalase/peroxidase, at 5,010,725 to 5,012,995 _4208 Position (kb) 5009 5010 5011Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5008.906 kb on - strandat 5008.906 kb on - strandat 5008.924 kb on - strand, within Psyr_4206at 5008.924 kb on - strand, within Psyr_4206at 5008.924 kb on - strand, within Psyr_4206at 5008.924 kb on - strand, within Psyr_4206at 5008.924 kb on - strand, within Psyr_4206at 5008.925 kb on + strand, within Psyr_4206at 5008.925 kb on + strand, within Psyr_4206at 5008.925 kb on + strand, within Psyr_4206at 5008.925 kb on + strand, within Psyr_4206at 5008.925 kb on + strand, within Psyr_4206at 5008.925 kb on + strand, within Psyr_4206at 5008.925 kb on + strand, within Psyr_4206at 5008.925 kb on + strand, within Psyr_4206at 5008.926 kb on - strand, within Psyr_4206at 5008.926 kb on - strand, within Psyr_4206at 5008.926 kb on - strand, within Psyr_4206at 5008.926 kb on - strand, within Psyr_4206at 5008.926 kb on - strand, within Psyr_4206at 5008.926 kb on - strand, within Psyr_4206at 5008.926 kb on - strand, within Psyr_4206at 5008.926 kb on - strand, within Psyr_4206at 5008.926 kb on - strand, within Psyr_4206at 5008.926 kb on - strand, within Psyr_4206at 5008.926 kb on - strand, within Psyr_4206at 5008.926 kb on - strand, within Psyr_4206at 5008.926 kb on - strand, within Psyr_4206at 5008.926 kb on - strand, within Psyr_4206at 5008.926 kb on - strand, within Psyr_4206at 5008.926 kb on - strand, within Psyr_4206at 5008.926 kb on - strand, within Psyr_4206at 5008.926 kb on - strand, within Psyr_4206at 5008.926 kb on - strand, within Psyr_4206at 5008.926 kb on - strand, within Psyr_4206at 5009.020 kb on + strand, within Psyr_4206at 5009.020 kb on + strand, within Psyr_4206at 5009.020 kb on + strand, within Psyr_4206at 5009.020 kb on + strand, within Psyr_4206at 5009.020 kb on + strand, within Psyr_4206at 5009.020 kb on + strand, within Psyr_4206at 5009.020 kb on + strand, within Psyr_4206at 5009.020 kb on + strand, within Psyr_4206at 5009.020 kb on + strand, within Psyr_4206at 5009.020 kb on + strand, within Psyr_4206at 5009.020 kb on + strand, within Psyr_4206at 5009.020 kb on + strand, within Psyr_4206at 5009.020 kb on + strand, within Psyr_4206at 5009.021 kb on - strand, within Psyr_4206at 5009.021 kb on - strand, within Psyr_4206at 5009.021 kb on - strand, within Psyr_4206at 5009.021 kb on - strand, within Psyr_4206at 5009.021 kb on - strand, within Psyr_4206at 5009.021 kb on - strand, within Psyr_4206at 5009.021 kb on - strand, within Psyr_4206at 5009.021 kb on - strand, within Psyr_4206at 5009.129 kb on + strand, within Psyr_4206at 5009.129 kb on + strand, within Psyr_4206at 5009.130 kb on - strand, within Psyr_4206at 5009.152 kb on + strand, within Psyr_4206at 5009.152 kb on + strand, within Psyr_4206at 5009.152 kb on + strand, within Psyr_4206at 5009.152 kb on + strand, within Psyr_4206at 5009.152 kb on + strand, within Psyr_4206at 5009.153 kb on - strand, within Psyr_4206at 5009.225 kb on + strand, within Psyr_4206at 5009.225 kb on + strand, within Psyr_4206at 5009.225 kb on + strand, within Psyr_4206at 5009.225 kb on + strand, within Psyr_4206at 5009.225 kb on + strand, within Psyr_4206at 5009.225 kb on + strand, within Psyr_4206at 5009.225 kb on + strand, within Psyr_4206at 5009.225 kb on + strand, within Psyr_4206at 5009.225 kb on + strand, within Psyr_4206at 5009.226 kb on - strand, within Psyr_4206at 5009.226 kb on - strand, within Psyr_4206at 5009.226 kb on - strand, within Psyr_4206at 5009.226 kb on - strand, within Psyr_4206at 5009.226 kb on - strand, within Psyr_4206at 5009.236 kb on + strand, within Psyr_4206at 5009.236 kb on + strand, within Psyr_4206at 5009.237 kb on - strand, within Psyr_4206at 5009.237 kb on - strand, within Psyr_4206at 5009.237 kb on - strand, within Psyr_4206at 5009.237 kb on - strand, within Psyr_4206at 5009.237 kb on - strand, within Psyr_4206at 5009.261 kb on + strand, within Psyr_4206at 5009.298 kb on + strand, within Psyr_4206at 5009.298 kb on + strand, within Psyr_4206at 5009.298 kb on + strand, within Psyr_4206at 5009.463 kb on + strand, within Psyr_4206at 5009.463 kb on + strand, within Psyr_4206at 5009.463 kb on + strand, within Psyr_4206at 5009.463 kb on + strand, within Psyr_4206at 5009.463 kb on + strand, within Psyr_4206at 5009.469 kb on + strand, within Psyr_4206at 5009.469 kb on + strand, within Psyr_4206at 5009.511 kb on + strand, within Psyr_4206at 5009.621 kb on + strand, within Psyr_4206at 5009.621 kb on + strand, within Psyr_4206at 5009.621 kb on + strand, within Psyr_4206at 5009.621 kb on + strand, within Psyr_4206at 5009.621 kb on + strand, within Psyr_4206at 5009.621 kb on + strand, within Psyr_4206at 5009.621 kb on + strand, within Psyr_4206at 5009.621 kb on + strand, within Psyr_4206at 5009.621 kb on + strand, within Psyr_4206at 5009.621 kb on + strand, within Psyr_4206at 5009.621 kb on + strand, within Psyr_4206at 5009.621 kb on + strand, within Psyr_4206at 5009.621 kb on + strand, within Psyr_4206at 5009.621 kb on + strand, within Psyr_4206at 5009.621 kb on + strand, within Psyr_4206at 5009.621 kb on + strand, within Psyr_4206at 5009.621 kb on + strand, within Psyr_4206at 5009.621 kb on + strand, within Psyr_4206at 5009.621 kb on + strand, within Psyr_4206at 5009.622 kb on - strand, within Psyr_4206at 5009.622 kb on - strand, within Psyr_4206at 5009.622 kb on - strand, within Psyr_4206at 5009.622 kb on - strand, within Psyr_4206at 5009.622 kb on - strand, within Psyr_4206at 5009.622 kb on - strand, within Psyr_4206at 5009.622 kb on - strand, within Psyr_4206at 5009.622 kb on - strand, within Psyr_4206at 5009.622 kb on - strand, within Psyr_4206at 5009.622 kb on - strand, within Psyr_4206at 5009.622 kb on - strand, within Psyr_4206at 5009.622 kb on - strand, within Psyr_4206at 5009.622 kb on - strand, within Psyr_4206at 5009.622 kb on - strand, within Psyr_4206at 5009.622 kb on - strand, within Psyr_4206at 5009.622 kb on - strand, within Psyr_4206at 5009.622 kb on - strand, within Psyr_4206at 5009.622 kb on - strand, within Psyr_4206at 5009.622 kb on - strand, within Psyr_4206at 5009.622 kb on - strand, within Psyr_4206at 5009.639 kb on + strand, within Psyr_4206at 5009.761 kb on + strand, within Psyr_4206at 5009.761 kb on + strand, within Psyr_4206at 5009.761 kb on + strand, within Psyr_4206at 5009.761 kb on + strand, within Psyr_4206at 5009.762 kb on - strand, within Psyr_4206at 5009.762 kb on - strand, within Psyr_4206at 5009.765 kb on - strand, within Psyr_4206at 5009.786 kb on + strandat 5009.786 kb on + strandat 5009.786 kb on + strandat 5009.786 kb on + strandat 5009.786 kb on + strandat 5009.786 kb on + strandat 5009.786 kb on + strandat 5009.786 kb on + strandat 5009.786 kb on + strandat 5009.786 kb on + strandat 5009.786 kb on + strandat 5009.786 kb on + strandat 5009.787 kb on - strandat 5009.787 kb on - strandat 5009.787 kb on - strandat 5009.787 kb on - strandat 5009.787 kb on - strandat 5009.787 kb on - strandat 5009.810 kb on + strandat 5009.810 kb on + strandat 5009.810 kb on + strandat 5009.874 kb on + strandat 5009.875 kb on - strandat 5009.884 kb on + strandat 5009.997 kb on + strand, within Psyr_4207at 5009.997 kb on + strand, within Psyr_4207at 5009.998 kb on - strand, within Psyr_4207at 5009.998 kb on - strand, within Psyr_4207at 5009.998 kb on - strand, within Psyr_4207at 5010.026 kb on + strand, within Psyr_4207at 5010.026 kb on + strand, within Psyr_4207at 5010.026 kb on + strand, within Psyr_4207at 5010.026 kb on + strand, within Psyr_4207at 5010.026 kb on + strand, within Psyr_4207at 5010.027 kb on - strand, within Psyr_4207at 5010.027 kb on - strand, within Psyr_4207at 5010.027 kb on - strand, within Psyr_4207at 5010.030 kb on + strand, within Psyr_4207at 5010.030 kb on + strand, within Psyr_4207at 5010.031 kb on - strand, within Psyr_4207at 5010.126 kb on - strand, within Psyr_4207at 5010.339 kb on - strandat 5010.374 kb on - strandat 5010.442 kb on + strandat 5010.468 kb on - strandat 5010.476 kb on + strandat 5010.477 kb on - strandat 5010.520 kb on - strandat 5010.520 kb on - strandat 5010.540 kb on + strandat 5010.541 kb on - strandat 5010.597 kb on + strandat 5010.597 kb on + strandat 5010.597 kb on + strandat 5010.598 kb on - strandat 5010.717 kb on + strandat 5010.718 kb on - strandat 5010.718 kb on - strandat 5010.989 kb on - strand, within Psyr_4208at 5011.010 kb on - strand, within Psyr_4208at 5011.139 kb on + strand, within Psyr_4208at 5011.139 kb on + strand, within Psyr_4208at 5011.139 kb on + strand, within Psyr_4208at 5011.140 kb on - strand, within Psyr_4208at 5011.140 kb on - strand, within Psyr_4208at 5011.269 kb on - strand, within Psyr_4208at 5011.269 kb on - strand, within Psyr_4208

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Erythromycin 6.25 ug/ml
remove
5,008,906 - -0.0
5,008,906 - -0.3
5,008,924 - Psyr_4206 0.11 -1.7
5,008,924 - Psyr_4206 0.11 -1.8
5,008,924 - Psyr_4206 0.11 -1.2
5,008,924 - Psyr_4206 0.11 -0.6
5,008,924 - Psyr_4206 0.11 -1.6
5,008,925 + Psyr_4206 0.11 +0.4
5,008,925 + Psyr_4206 0.11 +0.3
5,008,925 + Psyr_4206 0.11 +0.5
5,008,925 + Psyr_4206 0.11 -0.3
5,008,925 + Psyr_4206 0.11 -0.6
5,008,925 + Psyr_4206 0.11 +0.7
5,008,925 + Psyr_4206 0.11 -0.2
5,008,925 + Psyr_4206 0.11 -0.0
5,008,926 - Psyr_4206 0.12 -0.7
5,008,926 - Psyr_4206 0.12 +0.4
5,008,926 - Psyr_4206 0.12 -0.0
5,008,926 - Psyr_4206 0.12 -0.5
5,008,926 - Psyr_4206 0.12 -0.4
5,008,926 - Psyr_4206 0.12 -0.7
5,008,926 - Psyr_4206 0.12 -0.3
5,008,926 - Psyr_4206 0.12 +0.3
5,008,926 - Psyr_4206 0.12 -2.3
5,008,926 - Psyr_4206 0.12 +0.7
5,008,926 - Psyr_4206 0.12 -0.9
5,008,926 - Psyr_4206 0.12 -1.1
5,008,926 - Psyr_4206 0.12 -0.6
5,008,926 - Psyr_4206 0.12 +0.1
5,008,926 - Psyr_4206 0.12 +0.1
5,008,926 - Psyr_4206 0.12 +0.4
5,008,926 - Psyr_4206 0.12 -1.8
5,008,926 - Psyr_4206 0.12 -0.8
5,008,926 - Psyr_4206 0.12 -0.3
5,008,926 - Psyr_4206 0.12 +0.8
5,009,020 + Psyr_4206 0.20 -0.5
5,009,020 + Psyr_4206 0.20 -0.5
5,009,020 + Psyr_4206 0.20 -0.5
5,009,020 + Psyr_4206 0.20 +0.8
5,009,020 + Psyr_4206 0.20 -0.4
5,009,020 + Psyr_4206 0.20 -0.9
5,009,020 + Psyr_4206 0.20 +0.1
5,009,020 + Psyr_4206 0.20 -0.1
5,009,020 + Psyr_4206 0.20 -0.0
5,009,020 + Psyr_4206 0.20 -2.5
5,009,020 + Psyr_4206 0.20 +1.0
5,009,020 + Psyr_4206 0.20 +0.4
5,009,020 + Psyr_4206 0.20 +0.8
5,009,021 - Psyr_4206 0.20 -0.6
5,009,021 - Psyr_4206 0.20 -0.1
5,009,021 - Psyr_4206 0.20 +1.0
5,009,021 - Psyr_4206 0.20 -0.0
5,009,021 - Psyr_4206 0.20 -1.3
5,009,021 - Psyr_4206 0.20 -1.0
5,009,021 - Psyr_4206 0.20 -0.6
5,009,021 - Psyr_4206 0.20 -2.2
5,009,129 + Psyr_4206 0.30 +0.3
5,009,129 + Psyr_4206 0.30 -0.6
5,009,130 - Psyr_4206 0.30 +1.0
5,009,152 + Psyr_4206 0.32 -0.1
5,009,152 + Psyr_4206 0.32 -0.9
5,009,152 + Psyr_4206 0.32 +1.0
5,009,152 + Psyr_4206 0.32 -0.5
5,009,152 + Psyr_4206 0.32 +0.6
5,009,153 - Psyr_4206 0.32 -0.8
5,009,225 + Psyr_4206 0.39 +1.0
5,009,225 + Psyr_4206 0.39 +1.6
5,009,225 + Psyr_4206 0.39 -1.1
5,009,225 + Psyr_4206 0.39 +0.2
5,009,225 + Psyr_4206 0.39 -1.6
5,009,225 + Psyr_4206 0.39 -0.0
5,009,225 + Psyr_4206 0.39 -1.5
5,009,225 + Psyr_4206 0.39 -0.3
5,009,225 + Psyr_4206 0.39 -0.3
5,009,226 - Psyr_4206 0.39 +1.0
5,009,226 - Psyr_4206 0.39 -0.7
5,009,226 - Psyr_4206 0.39 -0.4
5,009,226 - Psyr_4206 0.39 -0.5
5,009,226 - Psyr_4206 0.39 -0.6
5,009,236 + Psyr_4206 0.40 -0.4
5,009,236 + Psyr_4206 0.40 -0.1
5,009,237 - Psyr_4206 0.40 -0.3
5,009,237 - Psyr_4206 0.40 +0.4
5,009,237 - Psyr_4206 0.40 +0.4
5,009,237 - Psyr_4206 0.40 -1.2
5,009,237 - Psyr_4206 0.40 +0.8
5,009,261 + Psyr_4206 0.42 -0.2
5,009,298 + Psyr_4206 0.46 -0.0
5,009,298 + Psyr_4206 0.46 -0.1
5,009,298 + Psyr_4206 0.46 +1.4
5,009,463 + Psyr_4206 0.61 -0.3
5,009,463 + Psyr_4206 0.61 +0.1
5,009,463 + Psyr_4206 0.61 -0.2
5,009,463 + Psyr_4206 0.61 -0.1
5,009,463 + Psyr_4206 0.61 +1.0
5,009,469 + Psyr_4206 0.62 -0.0
5,009,469 + Psyr_4206 0.62 -0.1
5,009,511 + Psyr_4206 0.65 -0.3
5,009,621 + Psyr_4206 0.76 -0.8
5,009,621 + Psyr_4206 0.76 -0.4
5,009,621 + Psyr_4206 0.76 -2.3
5,009,621 + Psyr_4206 0.76 +2.3
5,009,621 + Psyr_4206 0.76 -1.2
5,009,621 + Psyr_4206 0.76 +0.1
5,009,621 + Psyr_4206 0.76 +0.5
5,009,621 + Psyr_4206 0.76 +1.2
5,009,621 + Psyr_4206 0.76 -1.3
5,009,621 + Psyr_4206 0.76 +0.1
5,009,621 + Psyr_4206 0.76 -1.9
5,009,621 + Psyr_4206 0.76 -0.3
5,009,621 + Psyr_4206 0.76 -1.8
5,009,621 + Psyr_4206 0.76 -0.0
5,009,621 + Psyr_4206 0.76 -0.4
5,009,621 + Psyr_4206 0.76 -0.0
5,009,621 + Psyr_4206 0.76 +0.2
5,009,621 + Psyr_4206 0.76 -0.0
5,009,621 + Psyr_4206 0.76 +1.0
5,009,622 - Psyr_4206 0.76 +0.1
5,009,622 - Psyr_4206 0.76 +0.3
5,009,622 - Psyr_4206 0.76 +1.0
5,009,622 - Psyr_4206 0.76 -1.5
5,009,622 - Psyr_4206 0.76 -1.5
5,009,622 - Psyr_4206 0.76 -0.0
5,009,622 - Psyr_4206 0.76 -0.7
5,009,622 - Psyr_4206 0.76 -0.7
5,009,622 - Psyr_4206 0.76 -0.5
5,009,622 - Psyr_4206 0.76 -0.3
5,009,622 - Psyr_4206 0.76 -0.2
5,009,622 - Psyr_4206 0.76 -0.5
5,009,622 - Psyr_4206 0.76 +0.2
5,009,622 - Psyr_4206 0.76 +0.1
5,009,622 - Psyr_4206 0.76 -0.0
5,009,622 - Psyr_4206 0.76 -2.0
5,009,622 - Psyr_4206 0.76 +0.3
5,009,622 - Psyr_4206 0.76 -1.1
5,009,622 - Psyr_4206 0.76 +0.3
5,009,622 - Psyr_4206 0.76 -1.5
5,009,639 + Psyr_4206 0.77 -0.3
5,009,761 + Psyr_4206 0.88 -2.2
5,009,761 + Psyr_4206 0.88 -1.1
5,009,761 + Psyr_4206 0.88 -1.5
5,009,761 + Psyr_4206 0.88 +1.0
5,009,762 - Psyr_4206 0.88 -0.8
5,009,762 - Psyr_4206 0.88 -0.2
5,009,765 - Psyr_4206 0.89 -2.3
5,009,786 + -1.7
5,009,786 + -2.1
5,009,786 + +0.7
5,009,786 + -1.9
5,009,786 + -1.0
5,009,786 + -0.7
5,009,786 + +0.3
5,009,786 + -2.3
5,009,786 + -0.7
5,009,786 + +0.6
5,009,786 + -0.1
5,009,786 + +1.4
5,009,787 - -0.7
5,009,787 - -0.0
5,009,787 - -0.1
5,009,787 - +0.6
5,009,787 - -1.0
5,009,787 - -0.3
5,009,810 + +1.0
5,009,810 + -0.3
5,009,810 + -1.6
5,009,874 + -1.2
5,009,875 - -0.9
5,009,884 + -0.6
5,009,997 + Psyr_4207 0.22 +0.3
5,009,997 + Psyr_4207 0.22 +0.1
5,009,998 - Psyr_4207 0.22 -1.0
5,009,998 - Psyr_4207 0.22 -1.5
5,009,998 - Psyr_4207 0.22 +0.0
5,010,026 + Psyr_4207 0.29 +1.4
5,010,026 + Psyr_4207 0.29 -0.1
5,010,026 + Psyr_4207 0.29 +1.4
5,010,026 + Psyr_4207 0.29 +0.5
5,010,026 + Psyr_4207 0.29 -0.6
5,010,027 - Psyr_4207 0.29 -0.5
5,010,027 - Psyr_4207 0.29 -0.3
5,010,027 - Psyr_4207 0.29 +0.7
5,010,030 + Psyr_4207 0.30 +0.4
5,010,030 + Psyr_4207 0.30 +0.5
5,010,031 - Psyr_4207 0.30 -0.7
5,010,126 - Psyr_4207 0.52 +1.0
5,010,339 - -1.4
5,010,374 - -0.1
5,010,442 + +0.3
5,010,468 - -2.6
5,010,476 + +0.3
5,010,477 - -1.7
5,010,520 - -1.6
5,010,520 - +0.7
5,010,540 + +0.5
5,010,541 - -0.9
5,010,597 + +0.6
5,010,597 + +0.3
5,010,597 + +1.1
5,010,598 - -2.1
5,010,717 + -2.2
5,010,718 - -0.8
5,010,718 - -0.9
5,010,989 - Psyr_4208 0.12 -2.2
5,011,010 - Psyr_4208 0.13 -1.5
5,011,139 + Psyr_4208 0.18 -2.4
5,011,139 + Psyr_4208 0.18 -1.3
5,011,139 + Psyr_4208 0.18 -0.6
5,011,140 - Psyr_4208 0.18 -3.3
5,011,140 - Psyr_4208 0.18 -2.5
5,011,269 - Psyr_4208 0.24 -2.3
5,011,269 - Psyr_4208 0.24 -2.3

Or see this region's nucleotide sequence