Experiment: KB with Erythromycin 6.25 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3709 and Psyr_3710 are separated by 27 nucleotides Psyr_3710 and Psyr_3711 are separated by 172 nucleotides Psyr_3711 and Psyr_3712 are separated by 569 nucleotides
Psyr_3709: Psyr_3709 - Response regulator receiver:Transcriptional regulatory protein, C-terminal, at 4,396,395 to 4,397,072
_3709
Psyr_3710: Psyr_3710 - conserved hypothetical protein, at 4,397,100 to 4,397,450
_3710
Psyr_3711: Psyr_3711 - Dienelactone hydrolase, at 4,397,623 to 4,398,411
_3711
Psyr_3712: Psyr_3712 - conserved hypothetical protein, at 4,398,981 to 4,399,514
_3712
Position (kb) 4397
4398
4399 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4396.776 kb on + strand, within Psyr_3709 at 4396.776 kb on + strand, within Psyr_3709 at 4396.777 kb on - strand, within Psyr_3709 at 4396.777 kb on - strand, within Psyr_3709 at 4396.780 kb on + strand, within Psyr_3709 at 4396.780 kb on + strand, within Psyr_3709 at 4396.781 kb on - strand, within Psyr_3709 at 4396.781 kb on - strand, within Psyr_3709 at 4396.781 kb on - strand, within Psyr_3709 at 4396.781 kb on - strand, within Psyr_3709 at 4396.781 kb on - strand, within Psyr_3709 at 4396.960 kb on + strand, within Psyr_3709 at 4396.960 kb on + strand, within Psyr_3709 at 4396.961 kb on - strand, within Psyr_3709 at 4396.961 kb on - strand, within Psyr_3709 at 4396.961 kb on - strand, within Psyr_3709 at 4397.058 kb on + strand at 4397.059 kb on - strand at 4397.136 kb on - strand, within Psyr_3710 at 4397.179 kb on + strand, within Psyr_3710 at 4397.179 kb on + strand, within Psyr_3710 at 4397.179 kb on + strand, within Psyr_3710 at 4397.180 kb on - strand, within Psyr_3710 at 4397.180 kb on - strand, within Psyr_3710 at 4397.180 kb on - strand, within Psyr_3710 at 4397.451 kb on - strand at 4397.499 kb on + strand at 4397.499 kb on + strand at 4397.589 kb on - strand at 4397.737 kb on + strand, within Psyr_3711 at 4397.757 kb on - strand, within Psyr_3711 at 4397.812 kb on + strand, within Psyr_3711 at 4397.851 kb on + strand, within Psyr_3711 at 4397.875 kb on + strand, within Psyr_3711 at 4397.876 kb on - strand, within Psyr_3711 at 4397.876 kb on - strand, within Psyr_3711 at 4398.247 kb on + strand, within Psyr_3711 at 4398.247 kb on + strand, within Psyr_3711 at 4398.401 kb on + strand at 4398.401 kb on + strand at 4398.402 kb on - strand at 4398.402 kb on - strand at 4398.402 kb on - strand at 4398.985 kb on + strand at 4398.998 kb on + strand at 4399.042 kb on + strand, within Psyr_3712 at 4399.043 kb on - strand, within Psyr_3712 at 4399.043 kb on - strand, within Psyr_3712 at 4399.043 kb on - strand, within Psyr_3712 at 4399.069 kb on + strand, within Psyr_3712 at 4399.069 kb on + strand, within Psyr_3712 at 4399.069 kb on + strand, within Psyr_3712 at 4399.070 kb on - strand, within Psyr_3712 at 4399.099 kb on + strand, within Psyr_3712 at 4399.099 kb on + strand, within Psyr_3712 at 4399.257 kb on + strand, within Psyr_3712 at 4399.258 kb on - strand, within Psyr_3712 at 4399.272 kb on - strand, within Psyr_3712 at 4399.286 kb on + strand, within Psyr_3712 at 4399.287 kb on - strand, within Psyr_3712 at 4399.287 kb on - strand, within Psyr_3712 at 4399.344 kb on + strand, within Psyr_3712 at 4399.352 kb on - strand, within Psyr_3712 at 4399.352 kb on - strand, within Psyr_3712 at 4399.359 kb on + strand, within Psyr_3712 at 4399.360 kb on - strand, within Psyr_3712
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Erythromycin 6.25 ug/ml remove 4,396,776 + Psyr_3709 0.56 +0.6 4,396,776 + Psyr_3709 0.56 -0.3 4,396,777 - Psyr_3709 0.56 +0.9 4,396,777 - Psyr_3709 0.56 +0.7 4,396,780 + Psyr_3709 0.57 -2.3 4,396,780 + Psyr_3709 0.57 +0.5 4,396,781 - Psyr_3709 0.57 +0.2 4,396,781 - Psyr_3709 0.57 -0.6 4,396,781 - Psyr_3709 0.57 -0.1 4,396,781 - Psyr_3709 0.57 +0.1 4,396,781 - Psyr_3709 0.57 -0.7 4,396,960 + Psyr_3709 0.83 -0.9 4,396,960 + Psyr_3709 0.83 -1.4 4,396,961 - Psyr_3709 0.83 -0.7 4,396,961 - Psyr_3709 0.83 +0.6 4,396,961 - Psyr_3709 0.83 -0.4 4,397,058 + -1.1 4,397,059 - +2.1 4,397,136 - Psyr_3710 0.10 +3.2 4,397,179 + Psyr_3710 0.23 +0.1 4,397,179 + Psyr_3710 0.23 -0.6 4,397,179 + Psyr_3710 0.23 +0.2 4,397,180 - Psyr_3710 0.23 +0.1 4,397,180 - Psyr_3710 0.23 -1.3 4,397,180 - Psyr_3710 0.23 -0.1 4,397,451 - +1.4 4,397,499 + +0.3 4,397,499 + +1.1 4,397,589 - +0.2 4,397,737 + Psyr_3711 0.14 +0.6 4,397,757 - Psyr_3711 0.17 -2.7 4,397,812 + Psyr_3711 0.24 -1.9 4,397,851 + Psyr_3711 0.29 +0.5 4,397,875 + Psyr_3711 0.32 -0.3 4,397,876 - Psyr_3711 0.32 -2.3 4,397,876 - Psyr_3711 0.32 -1.1 4,398,247 + Psyr_3711 0.79 +0.4 4,398,247 + Psyr_3711 0.79 -0.2 4,398,401 + -0.7 4,398,401 + +0.9 4,398,402 - +0.3 4,398,402 - -0.6 4,398,402 - +0.4 4,398,985 + +0.3 4,398,998 + -0.8 4,399,042 + Psyr_3712 0.11 -1.1 4,399,043 - Psyr_3712 0.12 -1.1 4,399,043 - Psyr_3712 0.12 -1.0 4,399,043 - Psyr_3712 0.12 -0.5 4,399,069 + Psyr_3712 0.16 -0.8 4,399,069 + Psyr_3712 0.16 -1.8 4,399,069 + Psyr_3712 0.16 -0.6 4,399,070 - Psyr_3712 0.17 +3.2 4,399,099 + Psyr_3712 0.22 -0.7 4,399,099 + Psyr_3712 0.22 -0.8 4,399,257 + Psyr_3712 0.52 -0.9 4,399,258 - Psyr_3712 0.52 +0.2 4,399,272 - Psyr_3712 0.54 +0.2 4,399,286 + Psyr_3712 0.57 +0.8 4,399,287 - Psyr_3712 0.57 -0.3 4,399,287 - Psyr_3712 0.57 +0.1 4,399,344 + Psyr_3712 0.68 +0.2 4,399,352 - Psyr_3712 0.69 -0.7 4,399,352 - Psyr_3712 0.69 +0.5 4,399,359 + Psyr_3712 0.71 +0.3 4,399,360 - Psyr_3712 0.71 -1.8
Or see this region's nucleotide sequence