Experiment: KB with Erythromycin 6.25 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3667 and Psyr_3668 are separated by 481 nucleotides Psyr_3668 and Psyr_3669 are separated by 239 nucleotides Psyr_3669 and Psyr_3670 are separated by 290 nucleotides
Psyr_3667: Psyr_3667 - conserved hypothetical protein, at 4,354,248 to 4,354,553
_3667
Psyr_3668: Psyr_3668 - conserved domain protein, at 4,355,035 to 4,355,253
_3668
Psyr_3669: Psyr_3669 - Membrane protein involved in aromatic hydrocarbon degradation, at 4,355,493 to 4,356,776
_3669
Psyr_3670: Psyr_3670 - Glutathione peroxidase, at 4,357,067 to 4,357,621
_3670
Position (kb) 4355
4356
4357 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4354.824 kb on - strand at 4354.824 kb on - strand at 4354.858 kb on + strand at 4354.858 kb on + strand at 4354.858 kb on + strand at 4354.858 kb on + strand at 4354.858 kb on + strand at 4354.859 kb on - strand at 4354.859 kb on - strand at 4354.859 kb on - strand at 4354.859 kb on - strand at 4354.862 kb on + strand at 4354.862 kb on + strand at 4354.862 kb on + strand at 4354.862 kb on + strand at 4354.862 kb on + strand at 4354.862 kb on + strand at 4354.862 kb on + strand at 4354.863 kb on - strand at 4354.863 kb on - strand at 4354.866 kb on + strand at 4354.867 kb on - strand at 4354.887 kb on + strand at 4355.001 kb on - strand at 4355.035 kb on - strand at 4355.035 kb on - strand at 4355.310 kb on - strand at 4355.320 kb on + strand at 4355.320 kb on + strand at 4355.321 kb on - strand at 4355.322 kb on + strand at 4355.335 kb on - strand at 4355.344 kb on + strand at 4355.363 kb on + strand at 4355.364 kb on - strand at 4355.432 kb on + strand at 4355.434 kb on + strand at 4355.435 kb on - strand at 4355.488 kb on + strand at 4355.488 kb on + strand at 4355.489 kb on - strand at 4355.489 kb on - strand at 4355.489 kb on - strand at 4355.489 kb on - strand at 4355.489 kb on - strand at 4355.500 kb on + strand at 4355.501 kb on - strand at 4355.679 kb on - strand, within Psyr_3669 at 4355.818 kb on - strand, within Psyr_3669 at 4355.820 kb on + strand, within Psyr_3669 at 4355.820 kb on + strand, within Psyr_3669 at 4355.820 kb on + strand, within Psyr_3669 at 4355.820 kb on + strand, within Psyr_3669 at 4355.820 kb on + strand, within Psyr_3669 at 4355.820 kb on + strand, within Psyr_3669 at 4355.820 kb on + strand, within Psyr_3669 at 4355.820 kb on + strand, within Psyr_3669 at 4355.820 kb on + strand, within Psyr_3669 at 4355.821 kb on - strand, within Psyr_3669 at 4355.865 kb on + strand, within Psyr_3669 at 4355.866 kb on - strand, within Psyr_3669 at 4355.866 kb on - strand, within Psyr_3669 at 4355.866 kb on - strand, within Psyr_3669 at 4355.866 kb on - strand, within Psyr_3669 at 4355.892 kb on + strand, within Psyr_3669 at 4355.970 kb on + strand, within Psyr_3669 at 4355.970 kb on + strand, within Psyr_3669 at 4356.172 kb on - strand, within Psyr_3669 at 4356.190 kb on - strand, within Psyr_3669 at 4356.252 kb on + strand, within Psyr_3669 at 4356.252 kb on + strand, within Psyr_3669 at 4356.253 kb on - strand, within Psyr_3669 at 4356.253 kb on - strand, within Psyr_3669 at 4356.441 kb on - strand, within Psyr_3669 at 4356.492 kb on + strand, within Psyr_3669 at 4356.493 kb on - strand, within Psyr_3669 at 4356.503 kb on + strand, within Psyr_3669 at 4356.654 kb on + strand at 4356.660 kb on + strand at 4356.661 kb on - strand at 4356.715 kb on - strand at 4356.732 kb on - strand at 4356.765 kb on + strand at 4356.766 kb on - strand at 4356.833 kb on - strand at 4356.882 kb on + strand at 4356.882 kb on + strand at 4356.883 kb on - strand at 4356.883 kb on - strand at 4356.883 kb on - strand at 4356.987 kb on + strand at 4356.987 kb on + strand at 4356.988 kb on - strand at 4357.075 kb on + strand at 4357.176 kb on + strand, within Psyr_3670 at 4357.176 kb on + strand, within Psyr_3670 at 4357.176 kb on + strand, within Psyr_3670 at 4357.177 kb on - strand, within Psyr_3670 at 4357.177 kb on - strand, within Psyr_3670 at 4357.177 kb on - strand, within Psyr_3670 at 4357.177 kb on - strand, within Psyr_3670 at 4357.221 kb on - strand, within Psyr_3670 at 4357.254 kb on - strand, within Psyr_3670 at 4357.290 kb on + strand, within Psyr_3670 at 4357.290 kb on + strand, within Psyr_3670 at 4357.290 kb on + strand, within Psyr_3670 at 4357.291 kb on - strand, within Psyr_3670 at 4357.291 kb on - strand, within Psyr_3670 at 4357.299 kb on + strand, within Psyr_3670 at 4357.299 kb on + strand, within Psyr_3670 at 4357.300 kb on - strand, within Psyr_3670 at 4357.389 kb on + strand, within Psyr_3670 at 4357.389 kb on + strand, within Psyr_3670 at 4357.389 kb on + strand, within Psyr_3670 at 4357.450 kb on + strand, within Psyr_3670 at 4357.634 kb on + strand at 4357.681 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Erythromycin 6.25 ug/ml remove 4,354,824 - +0.2 4,354,824 - -1.4 4,354,858 + +0.6 4,354,858 + -0.0 4,354,858 + -0.6 4,354,858 + +0.0 4,354,858 + -1.1 4,354,859 - -2.2 4,354,859 - -0.6 4,354,859 - -0.1 4,354,859 - -0.1 4,354,862 + -0.3 4,354,862 + +0.9 4,354,862 + +0.3 4,354,862 + +0.1 4,354,862 + +0.1 4,354,862 + -0.8 4,354,862 + +0.3 4,354,863 - -2.4 4,354,863 - -1.1 4,354,866 + -1.1 4,354,867 - -0.6 4,354,887 + -1.7 4,355,001 - -0.5 4,355,035 - -2.1 4,355,035 - -1.0 4,355,310 - +1.3 4,355,320 + +0.2 4,355,320 + +1.3 4,355,321 - +0.0 4,355,322 + +0.3 4,355,335 - -1.3 4,355,344 + +0.2 4,355,363 + +0.0 4,355,364 - -0.2 4,355,432 + +0.9 4,355,434 + +0.2 4,355,435 - -0.9 4,355,488 + +0.4 4,355,488 + +0.1 4,355,489 - +0.9 4,355,489 - -0.7 4,355,489 - +2.6 4,355,489 - +0.9 4,355,489 - -1.1 4,355,500 + -0.8 4,355,501 - +0.5 4,355,679 - Psyr_3669 0.14 -0.2 4,355,818 - Psyr_3669 0.25 +2.1 4,355,820 + Psyr_3669 0.25 -0.4 4,355,820 + Psyr_3669 0.25 +0.1 4,355,820 + Psyr_3669 0.25 +1.5 4,355,820 + Psyr_3669 0.25 +2.6 4,355,820 + Psyr_3669 0.25 -0.4 4,355,820 + Psyr_3669 0.25 +1.7 4,355,820 + Psyr_3669 0.25 +0.6 4,355,820 + Psyr_3669 0.25 +0.0 4,355,820 + Psyr_3669 0.25 +0.8 4,355,821 - Psyr_3669 0.26 -0.4 4,355,865 + Psyr_3669 0.29 -0.3 4,355,866 - Psyr_3669 0.29 +0.3 4,355,866 - Psyr_3669 0.29 +0.9 4,355,866 - Psyr_3669 0.29 +0.8 4,355,866 - Psyr_3669 0.29 +0.2 4,355,892 + Psyr_3669 0.31 +0.0 4,355,970 + Psyr_3669 0.37 -1.1 4,355,970 + Psyr_3669 0.37 +1.5 4,356,172 - Psyr_3669 0.53 +0.6 4,356,190 - Psyr_3669 0.54 -0.8 4,356,252 + Psyr_3669 0.59 -0.2 4,356,252 + Psyr_3669 0.59 +0.1 4,356,253 - Psyr_3669 0.59 -2.3 4,356,253 - Psyr_3669 0.59 +1.0 4,356,441 - Psyr_3669 0.74 -0.9 4,356,492 + Psyr_3669 0.78 +0.9 4,356,493 - Psyr_3669 0.78 +0.4 4,356,503 + Psyr_3669 0.79 +0.4 4,356,654 + -0.0 4,356,660 + +1.1 4,356,661 - +0.5 4,356,715 - -0.7 4,356,732 - -0.4 4,356,765 + +2.5 4,356,766 - +0.2 4,356,833 - +0.5 4,356,882 + -0.5 4,356,882 + +0.7 4,356,883 - +0.8 4,356,883 - -0.1 4,356,883 - +0.9 4,356,987 + -2.9 4,356,987 + -0.9 4,356,988 - -0.1 4,357,075 + +0.0 4,357,176 + Psyr_3670 0.20 -0.0 4,357,176 + Psyr_3670 0.20 -0.1 4,357,176 + Psyr_3670 0.20 +1.1 4,357,177 - Psyr_3670 0.20 +0.0 4,357,177 - Psyr_3670 0.20 -1.4 4,357,177 - Psyr_3670 0.20 +0.3 4,357,177 - Psyr_3670 0.20 +1.3 4,357,221 - Psyr_3670 0.28 -0.5 4,357,254 - Psyr_3670 0.34 +0.2 4,357,290 + Psyr_3670 0.40 +1.2 4,357,290 + Psyr_3670 0.40 -0.9 4,357,290 + Psyr_3670 0.40 +0.2 4,357,291 - Psyr_3670 0.40 +0.6 4,357,291 - Psyr_3670 0.40 -0.1 4,357,299 + Psyr_3670 0.42 +2.5 4,357,299 + Psyr_3670 0.42 +0.1 4,357,300 - Psyr_3670 0.42 -0.1 4,357,389 + Psyr_3670 0.58 +1.1 4,357,389 + Psyr_3670 0.58 -0.1 4,357,389 + Psyr_3670 0.58 -0.1 4,357,450 + Psyr_3670 0.69 -1.1 4,357,634 + -0.4 4,357,681 + -0.8
Or see this region's nucleotide sequence