Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_0742

Experiment: KB with Erythromycin 6.25 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Erythromycin 6.25 ug/ml
844,736	+		Psyr_0740	0.53	+0.2
844,736	+		Psyr_0740	0.53	-0.5
844,884	+		Psyr_0740	0.89	+0.5
844,884	+		Psyr_0740	0.89	-0.7
844,884	+		Psyr_0740	0.89	+1.9
844,884	+		Psyr_0740	0.89	-1.4
844,884	+		Psyr_0740	0.89	-0.3
844,884	+		Psyr_0740	0.89	-1.4
844,884	+		Psyr_0740	0.89	+0.8
844,884	+		Psyr_0740	0.89	-0.9
844,885	-		Psyr_0740	0.89	+0.1
844,885	-		Psyr_0740	0.89	-1.3
844,885	-		Psyr_0740	0.89	-0.8
844,948	+				-0.7
844,949	-				-0.2
844,949	-				-0.1
844,952	+				-0.8
844,952	+				-1.5
844,952	+				+0.4
844,952	+				-0.1
844,952	+				-1.0
844,953	-				-0.3
844,953	-				+0.1
844,953	-				-1.2
844,953	-				-1.3
844,953	-				-1.1
844,953	-				+0.4
844,953	-				+0.3
844,960	+				-0.7
844,961	-				-0.9
844,961	-				-0.3
844,998	+				-1.9
844,999	-				+0.5
844,999	-				-0.2
845,009	+				-1.2
845,141	+		Psyr_0741	0.21	-0.7
845,142	-		Psyr_0741	0.21	-0.6
845,142	-		Psyr_0741	0.21	-1.5
845,183	+		Psyr_0741	0.28	-0.3
845,183	+		Psyr_0741	0.28	-0.5
845,183	+		Psyr_0741	0.28	-0.9
845,183	+		Psyr_0741	0.28	-0.8
845,183	+		Psyr_0741	0.28	+0.1
845,183	+		Psyr_0741	0.28	-1.7
845,184	-		Psyr_0741	0.28	-2.3
845,184	-		Psyr_0741	0.28	-1.1
845,184	-		Psyr_0741	0.28	+1.3
845,205	-		Psyr_0741	0.31	-1.0
845,304	-		Psyr_0741	0.47	+0.9
845,304	-		Psyr_0741	0.47	-0.9
845,311	+		Psyr_0741	0.48	-1.1
845,311	+		Psyr_0741	0.48	-0.3
845,311	+		Psyr_0741	0.48	-1.9
845,312	-		Psyr_0741	0.48	+0.1
845,352	+		Psyr_0741	0.54	-0.5
845,352	+		Psyr_0741	0.54	-0.3
845,352	+		Psyr_0741	0.54	+0.0
845,435	+		Psyr_0741	0.67	-1.7
845,435	+		Psyr_0741	0.67	+0.3
845,436	-		Psyr_0741	0.67	+0.5
845,436	-		Psyr_0741	0.67	-0.7
845,436	-		Psyr_0741	0.67	-0.4
845,436	-		Psyr_0741	0.67	-0.5
845,495	-		Psyr_0741	0.77	-0.7
845,650	+				-1.5
845,686	-				+0.3
845,697	+				+0.1
845,697	+				-1.7
845,697	+				-0.5
845,702	-				+0.1
845,702	-				-0.3
845,702	-				-2.5
845,702	-				-0.4
845,727	+				+0.5
845,845	+		Psyr_0742	0.18	+0.0
846,033	-		Psyr_0742	0.40	+0.0
846,163	+		Psyr_0742	0.56	-1.7
846,164	-		Psyr_0742	0.56	+0.3
846,284	-		Psyr_0742	0.71	-0.3
846,321	-		Psyr_0742	0.75	-0.8
846,327	+		Psyr_0742	0.76	-1.3
846,328	-		Psyr_0742	0.76	+0.0
846,328	-		Psyr_0742	0.76	-0.7
846,328	-		Psyr_0742	0.76	-0.1
846,328	-		Psyr_0742	0.76	-1.3
846,491	+				+1.5
846,492	-				-0.1
846,492	-				-2.5
846,519	-				-0.8
846,519	-				+0.3
846,536	+				-0.6
846,543	+				-1.5
846,544	-				+0.9
846,545	+				-1.3
846,545	+				-0.9
846,545	+				+0.9
846,545	+				+1.2
846,545	+				+0.3
846,545	+				-0.1
846,545	+				+0.5
846,546	-				-0.2
846,546	-				-0.4
846,546	-				-0.4
846,546	-				-0.6
846,546	-				-0.9
846,546	-				+0.5
846,546	-				-0.1
846,546	-				+0.6
846,546	-				+0.4
846,558	-				+0.1
846,593	+				+0.1
846,593	+				-0.8
846,593	+				-1.1
846,594	-				-0.3
846,594	-				-0.5
846,659	+				-1.1
846,754	+				-0.3
846,754	+				+0.8
846,754	+				+0.3
846,754	+				-0.4
846,755	-				-1.3
846,755	-				-0.5
846,755	-				+0.3
846,756	+				-0.1
846,756	+				-1.4
846,756	+				-0.3
846,756	+				-0.8
846,756	+				-1.6
846,756	+				+0.3
846,756	+				-0.7
846,756	+				-0.3
846,756	+				-0.7
846,756	+				+0.1
846,756	+				-0.4
846,756	+				+0.2
846,756	+				+0.1
846,757	-				-0.3
846,757	-				-1.7
846,757	-				-1.7
846,757	-				-0.9
846,757	-				+0.1
846,757	-				+0.2
846,757	-				+0.0
846,757	-				-0.1
846,757	-				-0.5
846,757	-				-0.3
846,759	+				+0.3
846,760	-				+0.2
846,760	-				+0.5
846,760	-				-1.3
846,760	-				+0.1
846,771	-				-0.4
846,774	+				+1.9
846,863	-				-1.9
846,932	+				+0.8
846,933	-				+0.6
846,982	-				+0.7
846,982	-				-0.3
846,982	-				-2.8
846,994	+				-0.5
846,994	+				+0.5
846,994	+				-0.6
846,994	+				+0.1
846,994	+				-0.4
846,994	+				+0.9
846,994	+				+0.4
846,994	+				+0.6
846,995	-				-0.6
846,995	-				-0.7
847,232	+		Psyr_0743	0.64	+1.1
847,232	+		Psyr_0743	0.64	+0.7
847,232	+		Psyr_0743	0.64	-0.7
847,232	+		Psyr_0743	0.64	-0.9
847,233	-		Psyr_0743	0.65	+0.7
847,233	-		Psyr_0743	0.65	-0.9
847,233	-		Psyr_0743	0.65	-0.4
847,235	+		Psyr_0743	0.65	-1.1
847,236	-		Psyr_0743	0.65	-1.2
847,236	-		Psyr_0743	0.65	-1.1
847,264	+		Psyr_0743	0.72	-1.1
847,468	+				+0.7
847,468	+				-0.4
847,468	+				-0.9
847,469	-				-0.0
847,469	-				-0.7