Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_0533

Experiment: KB with Erythromycin 6.25 ug/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_0532 and Psyr_0533 are separated by 31 nucleotidesPsyr_0533 and Psyr_0534 overlap by 11 nucleotides Psyr_0532: Psyr_0532 - conserved hypothetical protein, at 601,182 to 602,138 _0532 Psyr_0533: Psyr_0533 - conserved hypothetical protein, at 602,170 to 602,943 _0533 Psyr_0534: Psyr_0534 - membrane protein, putative, at 602,933 to 604,102 _0534 Position (kb) 602 603Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 601.192 kb on + strandat 601.192 kb on + strandat 601.192 kb on + strandat 601.193 kb on - strandat 601.237 kb on - strandat 601.311 kb on + strand, within Psyr_0532at 601.312 kb on - strand, within Psyr_0532at 601.341 kb on + strand, within Psyr_0532at 601.449 kb on + strand, within Psyr_0532at 601.449 kb on + strand, within Psyr_0532at 601.450 kb on - strand, within Psyr_0532at 601.464 kb on + strand, within Psyr_0532at 601.465 kb on - strand, within Psyr_0532at 601.465 kb on - strand, within Psyr_0532at 601.465 kb on - strand, within Psyr_0532at 601.465 kb on - strand, within Psyr_0532at 601.465 kb on - strand, within Psyr_0532at 601.465 kb on - strand, within Psyr_0532at 601.809 kb on + strand, within Psyr_0532at 601.809 kb on + strand, within Psyr_0532at 601.809 kb on + strand, within Psyr_0532at 601.810 kb on - strand, within Psyr_0532at 601.810 kb on - strand, within Psyr_0532at 601.810 kb on - strand, within Psyr_0532at 601.810 kb on - strand, within Psyr_0532at 601.993 kb on + strand, within Psyr_0532at 602.030 kb on + strand, within Psyr_0532at 602.199 kb on + strandat 602.200 kb on - strandat 602.200 kb on - strandat 602.470 kb on + strand, within Psyr_0533at 602.471 kb on - strand, within Psyr_0533at 602.548 kb on + strand, within Psyr_0533at 602.548 kb on + strand, within Psyr_0533at 602.549 kb on - strand, within Psyr_0533at 602.549 kb on - strand, within Psyr_0533at 602.549 kb on - strand, within Psyr_0533at 602.549 kb on - strand, within Psyr_0533at 602.623 kb on + strand, within Psyr_0533at 602.696 kb on - strand, within Psyr_0533at 602.713 kb on + strand, within Psyr_0533at 602.713 kb on + strand, within Psyr_0533at 602.713 kb on + strand, within Psyr_0533at 602.750 kb on + strand, within Psyr_0533at 602.909 kb on + strandat 602.912 kb on + strandat 602.912 kb on + strandat 602.913 kb on - strandat 602.928 kb on + strandat 602.928 kb on + strandat 602.928 kb on + strandat 602.929 kb on - strandat 602.931 kb on + strandat 602.931 kb on + strandat 602.932 kb on - strandat 602.932 kb on - strandat 602.970 kb on + strandat 602.970 kb on + strandat 602.970 kb on + strandat 602.971 kb on - strandat 602.971 kb on - strandat 602.978 kb on + strandat 602.978 kb on + strandat 602.978 kb on + strandat 602.978 kb on + strandat 602.978 kb on + strandat 602.978 kb on + strandat 602.979 kb on - strandat 602.979 kb on - strandat 603.056 kb on + strand, within Psyr_0534at 603.056 kb on + strand, within Psyr_0534at 603.056 kb on + strand, within Psyr_0534at 603.056 kb on + strand, within Psyr_0534at 603.057 kb on - strand, within Psyr_0534at 603.057 kb on - strand, within Psyr_0534at 603.057 kb on - strand, within Psyr_0534at 603.198 kb on - strand, within Psyr_0534at 603.200 kb on + strand, within Psyr_0534at 603.200 kb on + strand, within Psyr_0534at 603.200 kb on + strand, within Psyr_0534at 603.200 kb on + strand, within Psyr_0534at 603.200 kb on + strand, within Psyr_0534at 603.200 kb on + strand, within Psyr_0534at 603.200 kb on + strand, within Psyr_0534at 603.215 kb on + strand, within Psyr_0534at 603.215 kb on + strand, within Psyr_0534at 603.215 kb on + strand, within Psyr_0534at 603.215 kb on + strand, within Psyr_0534at 603.215 kb on + strand, within Psyr_0534at 603.215 kb on + strand, within Psyr_0534at 603.215 kb on + strand, within Psyr_0534at 603.216 kb on - strand, within Psyr_0534at 603.216 kb on - strand, within Psyr_0534at 603.216 kb on - strand, within Psyr_0534at 603.216 kb on - strand, within Psyr_0534at 603.216 kb on - strand, within Psyr_0534at 603.216 kb on - strand, within Psyr_0534at 603.216 kb on - strand, within Psyr_0534at 603.306 kb on + strand, within Psyr_0534at 603.306 kb on + strand, within Psyr_0534at 603.306 kb on + strand, within Psyr_0534at 603.307 kb on - strand, within Psyr_0534at 603.307 kb on - strand, within Psyr_0534at 603.307 kb on - strand, within Psyr_0534at 603.307 kb on - strand, within Psyr_0534at 603.307 kb on - strand, within Psyr_0534at 603.314 kb on + strand, within Psyr_0534at 603.314 kb on + strand, within Psyr_0534at 603.314 kb on + strand, within Psyr_0534at 603.315 kb on - strand, within Psyr_0534at 603.315 kb on - strand, within Psyr_0534at 603.315 kb on - strand, within Psyr_0534at 603.315 kb on - strand, within Psyr_0534at 603.315 kb on - strand, within Psyr_0534at 603.410 kb on + strand, within Psyr_0534at 603.411 kb on - strand, within Psyr_0534at 603.411 kb on - strand, within Psyr_0534at 603.411 kb on - strand, within Psyr_0534at 603.411 kb on - strand, within Psyr_0534at 603.411 kb on - strand, within Psyr_0534at 603.528 kb on + strand, within Psyr_0534at 603.528 kb on + strand, within Psyr_0534at 603.588 kb on - strand, within Psyr_0534at 603.588 kb on - strand, within Psyr_0534at 603.794 kb on + strand, within Psyr_0534at 603.794 kb on + strand, within Psyr_0534at 603.794 kb on + strand, within Psyr_0534at 603.795 kb on - strand, within Psyr_0534at 603.795 kb on - strand, within Psyr_0534at 603.795 kb on - strand, within Psyr_0534at 603.797 kb on - strand, within Psyr_0534at 603.797 kb on - strand, within Psyr_0534at 603.822 kb on + strand, within Psyr_0534at 603.844 kb on + strand, within Psyr_0534at 603.866 kb on + strand, within Psyr_0534at 603.866 kb on + strand, within Psyr_0534at 603.867 kb on - strand, within Psyr_0534at 603.867 kb on - strand, within Psyr_0534at 603.867 kb on - strand, within Psyr_0534

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Erythromycin 6.25 ug/ml
remove
601,192 + +2.4
601,192 + +0.5
601,192 + +1.7
601,193 - +0.9
601,237 - +1.0
601,311 + Psyr_0532 0.13 +1.3
601,312 - Psyr_0532 0.14 +3.2
601,341 + Psyr_0532 0.17 +0.8
601,449 + Psyr_0532 0.28 +1.3
601,449 + Psyr_0532 0.28 +1.4
601,450 - Psyr_0532 0.28 +1.8
601,464 + Psyr_0532 0.29 +0.3
601,465 - Psyr_0532 0.30 +0.4
601,465 - Psyr_0532 0.30 -0.2
601,465 - Psyr_0532 0.30 +1.0
601,465 - Psyr_0532 0.30 +3.0
601,465 - Psyr_0532 0.30 +1.3
601,465 - Psyr_0532 0.30 +2.0
601,809 + Psyr_0532 0.66 +1.4
601,809 + Psyr_0532 0.66 +3.8
601,809 + Psyr_0532 0.66 +0.0
601,810 - Psyr_0532 0.66 +1.2
601,810 - Psyr_0532 0.66 +2.2
601,810 - Psyr_0532 0.66 +1.8
601,810 - Psyr_0532 0.66 +2.4
601,993 + Psyr_0532 0.85 +0.3
602,030 + Psyr_0532 0.89 +0.1
602,199 + +2.2
602,200 - +3.0
602,200 - +1.0
602,470 + Psyr_0533 0.39 +0.9
602,471 - Psyr_0533 0.39 +1.0
602,548 + Psyr_0533 0.49 +0.4
602,548 + Psyr_0533 0.49 +0.2
602,549 - Psyr_0533 0.49 +2.5
602,549 - Psyr_0533 0.49 +1.6
602,549 - Psyr_0533 0.49 +1.5
602,549 - Psyr_0533 0.49 +1.7
602,623 + Psyr_0533 0.59 +1.5
602,696 - Psyr_0533 0.68 +1.4
602,713 + Psyr_0533 0.70 +0.7
602,713 + Psyr_0533 0.70 -0.3
602,713 + Psyr_0533 0.70 +0.6
602,750 + Psyr_0533 0.75 +0.0
602,909 + +2.0
602,912 + -2.4
602,912 + -0.1
602,913 - +0.9
602,928 + +1.4
602,928 + +1.3
602,928 + +1.7
602,929 - +0.8
602,931 + +1.7
602,931 + +1.8
602,932 - +1.2
602,932 - +2.9
602,970 + +0.7
602,970 + +0.4
602,970 + +1.8
602,971 - +2.3
602,971 - +3.4
602,978 + +1.3
602,978 + +1.4
602,978 + +1.5
602,978 + +1.8
602,978 + -0.4
602,978 + +2.5
602,979 - +1.7
602,979 - +0.7
603,056 + Psyr_0534 0.11 +0.7
603,056 + Psyr_0534 0.11 +1.2
603,056 + Psyr_0534 0.11 +3.0
603,056 + Psyr_0534 0.11 +1.8
603,057 - Psyr_0534 0.11 +0.9
603,057 - Psyr_0534 0.11 +1.0
603,057 - Psyr_0534 0.11 +0.5
603,198 - Psyr_0534 0.23 +1.2
603,200 + Psyr_0534 0.23 +1.6
603,200 + Psyr_0534 0.23 +1.6
603,200 + Psyr_0534 0.23 +1.0
603,200 + Psyr_0534 0.23 -0.6
603,200 + Psyr_0534 0.23 +1.6
603,200 + Psyr_0534 0.23 +2.3
603,200 + Psyr_0534 0.23 +1.7
603,215 + Psyr_0534 0.24 +1.6
603,215 + Psyr_0534 0.24 +1.3
603,215 + Psyr_0534 0.24 +1.4
603,215 + Psyr_0534 0.24 +1.4
603,215 + Psyr_0534 0.24 +2.0
603,215 + Psyr_0534 0.24 +2.3
603,215 + Psyr_0534 0.24 +2.0
603,216 - Psyr_0534 0.24 +2.0
603,216 - Psyr_0534 0.24 -0.3
603,216 - Psyr_0534 0.24 +2.3
603,216 - Psyr_0534 0.24 +2.0
603,216 - Psyr_0534 0.24 -0.6
603,216 - Psyr_0534 0.24 +1.8
603,216 - Psyr_0534 0.24 +1.4
603,306 + Psyr_0534 0.32 +2.9
603,306 + Psyr_0534 0.32 +2.5
603,306 + Psyr_0534 0.32 +1.3
603,307 - Psyr_0534 0.32 +0.5
603,307 - Psyr_0534 0.32 +1.7
603,307 - Psyr_0534 0.32 +1.7
603,307 - Psyr_0534 0.32 +1.8
603,307 - Psyr_0534 0.32 +1.3
603,314 + Psyr_0534 0.33 +1.8
603,314 + Psyr_0534 0.33 +1.3
603,314 + Psyr_0534 0.33 +1.8
603,315 - Psyr_0534 0.33 -0.8
603,315 - Psyr_0534 0.33 +1.8
603,315 - Psyr_0534 0.33 +1.5
603,315 - Psyr_0534 0.33 +2.1
603,315 - Psyr_0534 0.33 +2.8
603,410 + Psyr_0534 0.41 +1.6
603,411 - Psyr_0534 0.41 +1.1
603,411 - Psyr_0534 0.41 +0.8
603,411 - Psyr_0534 0.41 +1.3
603,411 - Psyr_0534 0.41 +3.4
603,411 - Psyr_0534 0.41 +0.7
603,528 + Psyr_0534 0.51 +0.6
603,528 + Psyr_0534 0.51 +0.9
603,588 - Psyr_0534 0.56 +1.2
603,588 - Psyr_0534 0.56 +1.9
603,794 + Psyr_0534 0.74 +0.3
603,794 + Psyr_0534 0.74 +2.5
603,794 + Psyr_0534 0.74 +0.5
603,795 - Psyr_0534 0.74 +1.6
603,795 - Psyr_0534 0.74 +1.4
603,795 - Psyr_0534 0.74 +2.1
603,797 - Psyr_0534 0.74 +0.6
603,797 - Psyr_0534 0.74 +0.9
603,822 + Psyr_0534 0.76 +2.7
603,844 + Psyr_0534 0.78 +1.7
603,866 + Psyr_0534 0.80 +1.4
603,866 + Psyr_0534 0.80 +0.6
603,867 - Psyr_0534 0.80 +0.1
603,867 - Psyr_0534 0.80 +2.8
603,867 - Psyr_0534 0.80 +0.1

Or see this region's nucleotide sequence