Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_906

Experiment: L-Valine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_904 and PfGW456L13_905 are separated by 194 nucleotidesPfGW456L13_905 and PfGW456L13_906 are separated by 68 nucleotidesPfGW456L13_906 and PfGW456L13_907 are separated by 8 nucleotides PfGW456L13_904 - Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2), at 1,011,571 to 1,014,444 _904 PfGW456L13_905 - Ribonucleotide reductase, alpha subunit, at 1,014,639 to 1,014,956 _905 PfGW456L13_906 - Putative activity regulator of membrane protease YbbK, at 1,015,025 to 1,015,474 _906 PfGW456L13_907 - Putative stomatin/prohibitin-family membrane protease subunit YbbK, at 1,015,483 to 1,016,403 _907 Position (kb) 1015 1016Strain fitness (log2 ratio) -3 -2 -1 0 1at 1014.082 kb on + strand, within PfGW456L13_904at 1014.228 kb on + strandat 1014.229 kb on - strandat 1014.229 kb on - strandat 1014.229 kb on - strandat 1014.229 kb on - strandat 1014.270 kb on + strandat 1014.270 kb on + strandat 1014.270 kb on + strandat 1014.270 kb on + strandat 1014.271 kb on - strandat 1014.271 kb on - strandat 1014.271 kb on - strandat 1014.271 kb on - strandat 1014.307 kb on + strandat 1014.307 kb on + strandat 1014.307 kb on + strandat 1014.308 kb on - strandat 1014.308 kb on - strandat 1014.308 kb on - strandat 1014.358 kb on + strandat 1014.358 kb on + strandat 1014.359 kb on - strandat 1014.359 kb on - strandat 1014.359 kb on - strandat 1014.391 kb on + strandat 1014.391 kb on + strandat 1014.391 kb on + strandat 1014.436 kb on + strandat 1014.461 kb on + strandat 1014.461 kb on + strandat 1014.461 kb on + strandat 1014.461 kb on + strandat 1014.462 kb on - strandat 1014.462 kb on - strandat 1014.462 kb on - strandat 1014.462 kb on - strandat 1014.519 kb on - strandat 1014.838 kb on + strand, within PfGW456L13_905at 1014.838 kb on + strand, within PfGW456L13_905at 1014.839 kb on - strand, within PfGW456L13_905at 1014.866 kb on + strand, within PfGW456L13_905at 1014.866 kb on + strand, within PfGW456L13_905at 1014.866 kb on + strand, within PfGW456L13_905at 1014.866 kb on + strand, within PfGW456L13_905at 1014.866 kb on + strand, within PfGW456L13_905at 1014.867 kb on - strand, within PfGW456L13_905at 1014.867 kb on - strand, within PfGW456L13_905at 1014.867 kb on - strand, within PfGW456L13_905at 1014.867 kb on - strand, within PfGW456L13_905at 1014.867 kb on - strand, within PfGW456L13_905at 1014.867 kb on - strand, within PfGW456L13_905at 1014.876 kb on - strand, within PfGW456L13_905at 1014.876 kb on - strand, within PfGW456L13_905at 1014.983 kb on - strandat 1015.026 kb on + strandat 1015.027 kb on - strandat 1015.027 kb on - strandat 1015.027 kb on - strandat 1015.263 kb on + strand, within PfGW456L13_906at 1015.264 kb on - strand, within PfGW456L13_906at 1015.264 kb on - strand, within PfGW456L13_906at 1015.418 kb on + strand, within PfGW456L13_906at 1015.418 kb on + strand, within PfGW456L13_906at 1015.419 kb on - strand, within PfGW456L13_906at 1015.622 kb on + strand, within PfGW456L13_907at 1015.622 kb on + strand, within PfGW456L13_907at 1015.622 kb on + strand, within PfGW456L13_907at 1015.622 kb on + strand, within PfGW456L13_907at 1015.622 kb on + strand, within PfGW456L13_907at 1015.623 kb on - strand, within PfGW456L13_907at 1015.623 kb on - strand, within PfGW456L13_907at 1015.623 kb on - strand, within PfGW456L13_907at 1015.623 kb on - strand, within PfGW456L13_907at 1015.623 kb on - strand, within PfGW456L13_907at 1015.623 kb on - strand, within PfGW456L13_907at 1015.640 kb on + strand, within PfGW456L13_907at 1015.640 kb on + strand, within PfGW456L13_907at 1015.641 kb on - strand, within PfGW456L13_907at 1015.641 kb on - strand, within PfGW456L13_907at 1015.641 kb on - strand, within PfGW456L13_907at 1015.641 kb on - strand, within PfGW456L13_907at 1016.175 kb on + strand, within PfGW456L13_907at 1016.197 kb on - strand, within PfGW456L13_907at 1016.454 kb on + strandat 1016.454 kb on + strandat 1016.454 kb on + strandat 1016.454 kb on + strandat 1016.454 kb on + strandat 1016.454 kb on + strandat 1016.455 kb on - strandat 1016.455 kb on - strandat 1016.455 kb on - strandat 1016.455 kb on - strandat 1016.455 kb on - strandat 1016.455 kb on - strandat 1016.455 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Valine (C)
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1,014,082 + PfGW456L13_904 0.87 +0.6
1,014,228 + +0.6
1,014,229 - +1.0
1,014,229 - -1.1
1,014,229 - +1.2
1,014,229 - +0.8
1,014,270 + -2.0
1,014,270 + +0.2
1,014,270 + +0.3
1,014,270 + -0.8
1,014,271 - -0.3
1,014,271 - +0.2
1,014,271 - -0.3
1,014,271 - -1.8
1,014,307 + +1.4
1,014,307 + -2.0
1,014,307 + -1.1
1,014,308 - +0.7
1,014,308 - +0.3
1,014,308 - +0.3
1,014,358 + -1.0
1,014,358 + -0.3
1,014,359 - +0.5
1,014,359 - -0.5
1,014,359 - -0.6
1,014,391 + +1.1
1,014,391 + +0.1
1,014,391 + -0.4
1,014,436 + -1.6
1,014,461 + -0.8
1,014,461 + +0.4
1,014,461 + -0.1
1,014,461 + +0.7
1,014,462 - +0.1
1,014,462 - -0.1
1,014,462 - +0.3
1,014,462 - +1.1
1,014,519 - +0.6
1,014,838 + PfGW456L13_905 0.63 -0.0
1,014,838 + PfGW456L13_905 0.63 -0.4
1,014,839 - PfGW456L13_905 0.63 +0.6
1,014,866 + PfGW456L13_905 0.71 -0.2
1,014,866 + PfGW456L13_905 0.71 +0.0
1,014,866 + PfGW456L13_905 0.71 +0.2
1,014,866 + PfGW456L13_905 0.71 -2.6
1,014,866 + PfGW456L13_905 0.71 -0.5
1,014,867 - PfGW456L13_905 0.72 -0.7
1,014,867 - PfGW456L13_905 0.72 -0.2
1,014,867 - PfGW456L13_905 0.72 +0.3
1,014,867 - PfGW456L13_905 0.72 -0.1
1,014,867 - PfGW456L13_905 0.72 +0.3
1,014,867 - PfGW456L13_905 0.72 +1.3
1,014,876 - PfGW456L13_905 0.75 -0.3
1,014,876 - PfGW456L13_905 0.75 -0.7
1,014,983 - -0.2
1,015,026 + -0.0
1,015,027 - -2.5
1,015,027 - +0.7
1,015,027 - +0.3
1,015,263 + PfGW456L13_906 0.53 +0.1
1,015,264 - PfGW456L13_906 0.53 +0.6
1,015,264 - PfGW456L13_906 0.53 +0.6
1,015,418 + PfGW456L13_906 0.87 +1.3
1,015,418 + PfGW456L13_906 0.87 -0.5
1,015,419 - PfGW456L13_906 0.88 -3.1
1,015,622 + PfGW456L13_907 0.15 +0.6
1,015,622 + PfGW456L13_907 0.15 +1.0
1,015,622 + PfGW456L13_907 0.15 -0.6
1,015,622 + PfGW456L13_907 0.15 +1.4
1,015,622 + PfGW456L13_907 0.15 -0.6
1,015,623 - PfGW456L13_907 0.15 -1.1
1,015,623 - PfGW456L13_907 0.15 -1.3
1,015,623 - PfGW456L13_907 0.15 -1.2
1,015,623 - PfGW456L13_907 0.15 -1.4
1,015,623 - PfGW456L13_907 0.15 +0.5
1,015,623 - PfGW456L13_907 0.15 -2.2
1,015,640 + PfGW456L13_907 0.17 +0.2
1,015,640 + PfGW456L13_907 0.17 -0.6
1,015,641 - PfGW456L13_907 0.17 -0.0
1,015,641 - PfGW456L13_907 0.17 +0.8
1,015,641 - PfGW456L13_907 0.17 +0.8
1,015,641 - PfGW456L13_907 0.17 -1.1
1,016,175 + PfGW456L13_907 0.75 +0.4
1,016,197 - PfGW456L13_907 0.78 -0.7
1,016,454 + +0.2
1,016,454 + -0.6
1,016,454 + +0.2
1,016,454 + -0.3
1,016,454 + +0.6
1,016,454 + +0.8
1,016,455 - -0.4
1,016,455 - -0.1
1,016,455 - +0.2
1,016,455 - +0.2
1,016,455 - +0.2
1,016,455 - -0.8
1,016,455 - -0.2

Or see this region's nucleotide sequence