Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_501

Experiment: L-Valine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_498 and PfGW456L13_499 are separated by 117 nucleotidesPfGW456L13_499 and PfGW456L13_500 are separated by 15 nucleotidesPfGW456L13_500 and PfGW456L13_501 are separated by 139 nucleotidesPfGW456L13_501 and PfGW456L13_502 are separated by 71 nucleotides PfGW456L13_498 - hypothetical protein, at 573,282 to 573,491 _498 PfGW456L13_499 - FIG00954152: hypothetical protein, at 573,609 to 573,890 _499 PfGW456L13_500 - FIG00954152: hypothetical protein, at 573,906 to 574,169 _500 PfGW456L13_501 - Ferredoxin reductase, at 574,309 to 575,838 _501 PfGW456L13_502 - GTP-binding protein, at 575,910 to 577,415 _502 Position (kb) 574 575 576Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 573.310 kb on + strand, within PfGW456L13_498at 573.514 kb on - strandat 573.524 kb on + strandat 573.524 kb on + strandat 573.524 kb on + strandat 573.619 kb on + strandat 573.620 kb on - strandat 573.727 kb on + strand, within PfGW456L13_499at 573.727 kb on + strand, within PfGW456L13_499at 573.728 kb on - strand, within PfGW456L13_499at 573.728 kb on - strand, within PfGW456L13_499at 573.742 kb on + strand, within PfGW456L13_499at 573.742 kb on + strand, within PfGW456L13_499at 573.742 kb on + strand, within PfGW456L13_499at 573.742 kb on + strand, within PfGW456L13_499at 573.742 kb on + strand, within PfGW456L13_499at 573.742 kb on + strand, within PfGW456L13_499at 573.742 kb on + strand, within PfGW456L13_499at 573.742 kb on + strand, within PfGW456L13_499at 573.742 kb on + strand, within PfGW456L13_499at 573.742 kb on + strand, within PfGW456L13_499at 573.742 kb on + strand, within PfGW456L13_499at 573.743 kb on - strand, within PfGW456L13_499at 573.743 kb on - strand, within PfGW456L13_499at 573.743 kb on - strand, within PfGW456L13_499at 573.743 kb on - strand, within PfGW456L13_499at 573.743 kb on - strand, within PfGW456L13_499at 573.743 kb on - strand, within PfGW456L13_499at 573.743 kb on - strand, within PfGW456L13_499at 573.743 kb on - strand, within PfGW456L13_499at 573.743 kb on - strand, within PfGW456L13_499at 573.743 kb on - strand, within PfGW456L13_499at 573.784 kb on + strand, within PfGW456L13_499at 573.785 kb on - strand, within PfGW456L13_499at 573.785 kb on - strand, within PfGW456L13_499at 573.907 kb on + strandat 573.908 kb on - strandat 573.946 kb on + strand, within PfGW456L13_500at 573.946 kb on + strand, within PfGW456L13_500at 573.946 kb on + strand, within PfGW456L13_500at 573.998 kb on + strand, within PfGW456L13_500at 573.999 kb on - strand, within PfGW456L13_500at 574.184 kb on + strandat 574.185 kb on - strandat 574.185 kb on - strandat 574.185 kb on - strandat 574.185 kb on - strandat 574.185 kb on - strandat 574.185 kb on - strandat 574.185 kb on - strandat 574.214 kb on + strandat 574.214 kb on + strandat 574.214 kb on + strandat 574.214 kb on + strandat 574.215 kb on - strandat 574.215 kb on - strandat 574.215 kb on - strandat 574.215 kb on - strandat 574.216 kb on + strandat 574.217 kb on - strandat 574.265 kb on + strandat 574.265 kb on + strandat 574.266 kb on - strandat 574.266 kb on - strandat 574.270 kb on - strandat 574.280 kb on + strandat 574.280 kb on + strandat 574.280 kb on + strandat 574.281 kb on - strandat 574.281 kb on - strandat 574.281 kb on - strandat 574.281 kb on - strandat 574.423 kb on + strandat 574.710 kb on - strand, within PfGW456L13_501at 574.736 kb on + strand, within PfGW456L13_501at 574.784 kb on + strand, within PfGW456L13_501at 574.792 kb on + strand, within PfGW456L13_501at 574.792 kb on + strand, within PfGW456L13_501at 574.792 kb on + strand, within PfGW456L13_501at 574.792 kb on + strand, within PfGW456L13_501at 574.792 kb on + strand, within PfGW456L13_501at 574.792 kb on + strand, within PfGW456L13_501at 574.792 kb on + strand, within PfGW456L13_501at 574.948 kb on + strand, within PfGW456L13_501at 574.948 kb on + strand, within PfGW456L13_501at 574.948 kb on + strand, within PfGW456L13_501at 574.948 kb on + strand, within PfGW456L13_501at 574.948 kb on + strand, within PfGW456L13_501at 574.949 kb on - strand, within PfGW456L13_501at 574.949 kb on - strand, within PfGW456L13_501at 575.109 kb on + strand, within PfGW456L13_501at 575.109 kb on + strand, within PfGW456L13_501at 575.109 kb on + strand, within PfGW456L13_501at 575.110 kb on - strand, within PfGW456L13_501at 575.110 kb on - strand, within PfGW456L13_501at 575.162 kb on + strand, within PfGW456L13_501at 575.260 kb on - strand, within PfGW456L13_501at 575.500 kb on + strand, within PfGW456L13_501at 575.501 kb on - strand, within PfGW456L13_501at 575.501 kb on - strand, within PfGW456L13_501at 575.560 kb on - strand, within PfGW456L13_501at 575.560 kb on - strand, within PfGW456L13_501at 575.560 kb on - strand, within PfGW456L13_501at 575.581 kb on + strand, within PfGW456L13_501at 575.581 kb on + strand, within PfGW456L13_501at 575.581 kb on + strand, within PfGW456L13_501at 575.581 kb on + strand, within PfGW456L13_501at 575.582 kb on - strand, within PfGW456L13_501at 575.582 kb on - strand, within PfGW456L13_501at 575.582 kb on - strand, within PfGW456L13_501at 575.626 kb on + strand, within PfGW456L13_501at 575.626 kb on + strand, within PfGW456L13_501at 575.626 kb on + strand, within PfGW456L13_501at 575.626 kb on + strand, within PfGW456L13_501at 575.626 kb on + strand, within PfGW456L13_501at 575.626 kb on + strand, within PfGW456L13_501at 575.627 kb on - strand, within PfGW456L13_501at 575.627 kb on - strand, within PfGW456L13_501at 575.627 kb on - strand, within PfGW456L13_501at 575.627 kb on - strand, within PfGW456L13_501at 575.627 kb on - strand, within PfGW456L13_501at 575.632 kb on + strand, within PfGW456L13_501at 575.632 kb on + strand, within PfGW456L13_501at 575.632 kb on + strand, within PfGW456L13_501at 575.633 kb on - strand, within PfGW456L13_501at 575.633 kb on - strand, within PfGW456L13_501at 575.633 kb on - strand, within PfGW456L13_501at 575.633 kb on - strand, within PfGW456L13_501at 575.683 kb on + strand, within PfGW456L13_501at 575.683 kb on + strand, within PfGW456L13_501at 575.684 kb on - strand, within PfGW456L13_501at 575.684 kb on - strand, within PfGW456L13_501at 575.684 kb on - strand, within PfGW456L13_501at 575.700 kb on - strandat 575.700 kb on - strandat 575.700 kb on - strandat 575.899 kb on - strandat 576.032 kb on + strandat 576.032 kb on + strandat 576.032 kb on + strandat 576.032 kb on + strandat 576.033 kb on - strandat 576.248 kb on + strand, within PfGW456L13_502at 576.454 kb on + strand, within PfGW456L13_502at 576.455 kb on - strand, within PfGW456L13_502at 576.455 kb on - strand, within PfGW456L13_502at 576.475 kb on + strand, within PfGW456L13_502at 576.583 kb on + strand, within PfGW456L13_502at 576.584 kb on - strand, within PfGW456L13_502at 576.584 kb on - strand, within PfGW456L13_502at 576.584 kb on - strand, within PfGW456L13_502at 576.584 kb on - strand, within PfGW456L13_502at 576.721 kb on + strand, within PfGW456L13_502at 576.721 kb on + strand, within PfGW456L13_502at 576.722 kb on - strand, within PfGW456L13_502at 576.730 kb on + strand, within PfGW456L13_502at 576.730 kb on + strand, within PfGW456L13_502at 576.730 kb on + strand, within PfGW456L13_502at 576.730 kb on + strand, within PfGW456L13_502at 576.730 kb on + strand, within PfGW456L13_502at 576.730 kb on + strand, within PfGW456L13_502at 576.731 kb on - strand, within PfGW456L13_502at 576.731 kb on - strand, within PfGW456L13_502at 576.731 kb on - strand, within PfGW456L13_502at 576.731 kb on - strand, within PfGW456L13_502at 576.731 kb on - strand, within PfGW456L13_502at 576.731 kb on - strand, within PfGW456L13_502at 576.731 kb on - strand, within PfGW456L13_502at 576.731 kb on - strand, within PfGW456L13_502at 576.735 kb on - strand, within PfGW456L13_502at 576.735 kb on - strand, within PfGW456L13_502at 576.832 kb on + strand, within PfGW456L13_502at 576.832 kb on + strand, within PfGW456L13_502at 576.833 kb on - strand, within PfGW456L13_502

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Valine (C)
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573,310 + PfGW456L13_498 0.13 +1.3
573,514 - -0.9
573,524 + -2.9
573,524 + -2.0
573,524 + +0.7
573,619 + -1.3
573,620 - +0.8
573,727 + PfGW456L13_499 0.42 +0.7
573,727 + PfGW456L13_499 0.42 +0.5
573,728 - PfGW456L13_499 0.42 -2.0
573,728 - PfGW456L13_499 0.42 -2.1
573,742 + PfGW456L13_499 0.47 -1.4
573,742 + PfGW456L13_499 0.47 -0.1
573,742 + PfGW456L13_499 0.47 -2.6
573,742 + PfGW456L13_499 0.47 -0.2
573,742 + PfGW456L13_499 0.47 -0.3
573,742 + PfGW456L13_499 0.47 -0.8
573,742 + PfGW456L13_499 0.47 -3.3
573,742 + PfGW456L13_499 0.47 +0.3
573,742 + PfGW456L13_499 0.47 -2.5
573,742 + PfGW456L13_499 0.47 +0.2
573,742 + PfGW456L13_499 0.47 -0.1
573,743 - PfGW456L13_499 0.48 +0.1
573,743 - PfGW456L13_499 0.48 -0.9
573,743 - PfGW456L13_499 0.48 +0.5
573,743 - PfGW456L13_499 0.48 +0.7
573,743 - PfGW456L13_499 0.48 -1.5
573,743 - PfGW456L13_499 0.48 +2.2
573,743 - PfGW456L13_499 0.48 +1.2
573,743 - PfGW456L13_499 0.48 +0.6
573,743 - PfGW456L13_499 0.48 +0.3
573,743 - PfGW456L13_499 0.48 +1.0
573,784 + PfGW456L13_499 0.62 +0.2
573,785 - PfGW456L13_499 0.62 -0.2
573,785 - PfGW456L13_499 0.62 -1.9
573,907 + -1.1
573,908 - -0.7
573,946 + PfGW456L13_500 0.15 +0.0
573,946 + PfGW456L13_500 0.15 -0.5
573,946 + PfGW456L13_500 0.15 -0.1
573,998 + PfGW456L13_500 0.35 -1.2
573,999 - PfGW456L13_500 0.35 -0.7
574,184 + +0.5
574,185 - +0.5
574,185 - -0.6
574,185 - +0.6
574,185 - +0.3
574,185 - +0.5
574,185 - -2.2
574,185 - -1.4
574,214 + +0.1
574,214 + +0.8
574,214 + +0.4
574,214 + -0.3
574,215 - -0.3
574,215 - +0.4
574,215 - +0.2
574,215 - -0.2
574,216 + -0.3
574,217 - -0.4
574,265 + +0.3
574,265 + +1.3
574,266 - +0.3
574,266 - +0.6
574,270 - -0.1
574,280 + +0.2
574,280 + +1.0
574,280 + -0.0
574,281 - -0.6
574,281 - -0.3
574,281 - -0.8
574,281 - +1.7
574,423 + +0.1
574,710 - PfGW456L13_501 0.26 -0.3
574,736 + PfGW456L13_501 0.28 -0.4
574,784 + PfGW456L13_501 0.31 -0.1
574,792 + PfGW456L13_501 0.32 -0.0
574,792 + PfGW456L13_501 0.32 +0.2
574,792 + PfGW456L13_501 0.32 +0.0
574,792 + PfGW456L13_501 0.32 +0.9
574,792 + PfGW456L13_501 0.32 +1.0
574,792 + PfGW456L13_501 0.32 +0.2
574,792 + PfGW456L13_501 0.32 +0.2
574,948 + PfGW456L13_501 0.42 +1.0
574,948 + PfGW456L13_501 0.42 +0.4
574,948 + PfGW456L13_501 0.42 +0.3
574,948 + PfGW456L13_501 0.42 +0.4
574,948 + PfGW456L13_501 0.42 -1.4
574,949 - PfGW456L13_501 0.42 -0.2
574,949 - PfGW456L13_501 0.42 -0.4
575,109 + PfGW456L13_501 0.52 -1.7
575,109 + PfGW456L13_501 0.52 -1.2
575,109 + PfGW456L13_501 0.52 +1.2
575,110 - PfGW456L13_501 0.52 +0.2
575,110 - PfGW456L13_501 0.52 -0.2
575,162 + PfGW456L13_501 0.56 +1.0
575,260 - PfGW456L13_501 0.62 +0.1
575,500 + PfGW456L13_501 0.78 -1.4
575,501 - PfGW456L13_501 0.78 +0.5
575,501 - PfGW456L13_501 0.78 -1.2
575,560 - PfGW456L13_501 0.82 +0.5
575,560 - PfGW456L13_501 0.82 +1.5
575,560 - PfGW456L13_501 0.82 -1.2
575,581 + PfGW456L13_501 0.83 +2.3
575,581 + PfGW456L13_501 0.83 -0.4
575,581 + PfGW456L13_501 0.83 -0.3
575,581 + PfGW456L13_501 0.83 +0.7
575,582 - PfGW456L13_501 0.83 +0.8
575,582 - PfGW456L13_501 0.83 +1.1
575,582 - PfGW456L13_501 0.83 -0.0
575,626 + PfGW456L13_501 0.86 -1.1
575,626 + PfGW456L13_501 0.86 -1.4
575,626 + PfGW456L13_501 0.86 -0.3
575,626 + PfGW456L13_501 0.86 -1.6
575,626 + PfGW456L13_501 0.86 -1.4
575,626 + PfGW456L13_501 0.86 -0.4
575,627 - PfGW456L13_501 0.86 -1.2
575,627 - PfGW456L13_501 0.86 +0.5
575,627 - PfGW456L13_501 0.86 -0.9
575,627 - PfGW456L13_501 0.86 +0.7
575,627 - PfGW456L13_501 0.86 -1.9
575,632 + PfGW456L13_501 0.86 -1.3
575,632 + PfGW456L13_501 0.86 -2.5
575,632 + PfGW456L13_501 0.86 -0.7
575,633 - PfGW456L13_501 0.87 +0.4
575,633 - PfGW456L13_501 0.87 -0.4
575,633 - PfGW456L13_501 0.87 -0.8
575,633 - PfGW456L13_501 0.87 +0.0
575,683 + PfGW456L13_501 0.90 -0.8
575,683 + PfGW456L13_501 0.90 -0.5
575,684 - PfGW456L13_501 0.90 -0.8
575,684 - PfGW456L13_501 0.90 -1.4
575,684 - PfGW456L13_501 0.90 +1.5
575,700 - +0.9
575,700 - -0.1
575,700 - -1.5
575,899 - -0.3
576,032 + +1.5
576,032 + -1.1
576,032 + -1.4
576,032 + -0.6
576,033 - +0.6
576,248 + PfGW456L13_502 0.22 -0.2
576,454 + PfGW456L13_502 0.36 +1.0
576,455 - PfGW456L13_502 0.36 -2.3
576,455 - PfGW456L13_502 0.36 -0.4
576,475 + PfGW456L13_502 0.38 +0.4
576,583 + PfGW456L13_502 0.45 +1.0
576,584 - PfGW456L13_502 0.45 -3.4
576,584 - PfGW456L13_502 0.45 +0.6
576,584 - PfGW456L13_502 0.45 -3.5
576,584 - PfGW456L13_502 0.45 -0.6
576,721 + PfGW456L13_502 0.54 -1.4
576,721 + PfGW456L13_502 0.54 -0.6
576,722 - PfGW456L13_502 0.54 -0.1
576,730 + PfGW456L13_502 0.54 -1.5
576,730 + PfGW456L13_502 0.54 +1.1
576,730 + PfGW456L13_502 0.54 -0.2
576,730 + PfGW456L13_502 0.54 +1.1
576,730 + PfGW456L13_502 0.54 -0.1
576,730 + PfGW456L13_502 0.54 -0.6
576,731 - PfGW456L13_502 0.55 +0.7
576,731 - PfGW456L13_502 0.55 -1.9
576,731 - PfGW456L13_502 0.55 +0.1
576,731 - PfGW456L13_502 0.55 -0.9
576,731 - PfGW456L13_502 0.55 -0.4
576,731 - PfGW456L13_502 0.55 -0.6
576,731 - PfGW456L13_502 0.55 -0.4
576,731 - PfGW456L13_502 0.55 -0.5
576,735 - PfGW456L13_502 0.55 -0.1
576,735 - PfGW456L13_502 0.55 +0.3
576,832 + PfGW456L13_502 0.61 -0.1
576,832 + PfGW456L13_502 0.61 +0.8
576,833 - PfGW456L13_502 0.61 +0.1

Or see this region's nucleotide sequence