Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_1468

Experiment: L-Valine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_1466 and PfGW456L13_1467 are separated by 204 nucleotidesPfGW456L13_1467 and PfGW456L13_1468 are separated by 203 nucleotidesPfGW456L13_1468 and PfGW456L13_1469 are separated by 239 nucleotidesPfGW456L13_1469 and PfGW456L13_1470 are separated by 35 nucleotides PfGW456L13_1466 - FIG00953595: hypothetical protein, at 1,620,234 to 1,620,491 _1466 PfGW456L13_1467 - Alkylphosphonate utilization operon protein PhnA, at 1,620,696 to 1,621,037 _1467 PfGW456L13_1468 - Octaprenyl diphosphate synthase (EC 2.5.1.90) / Dimethylallyltransferase (EC 2.5.1.1) / (2E,6E)-farnesyl diphosphate synthase (EC 2.5.1.10) / Geranylgeranyl diphosphate synthase (EC 2.5.1.29), at 1,621,241 to 1,622,209 _1468 PfGW456L13_1469 - LSU ribosomal protein L21p, at 1,622,449 to 1,622,763 _1469 PfGW456L13_1470 - LSU ribosomal protein L27p, at 1,622,799 to 1,623,056 _1470 Position (kb) 1621 1622 1623Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1620.306 kb on - strand, within PfGW456L13_1466at 1620.448 kb on + strand, within PfGW456L13_1466at 1620.448 kb on + strand, within PfGW456L13_1466at 1620.448 kb on + strand, within PfGW456L13_1466at 1620.449 kb on - strand, within PfGW456L13_1466at 1620.449 kb on - strand, within PfGW456L13_1466at 1620.484 kb on + strandat 1620.484 kb on + strandat 1620.484 kb on + strandat 1620.484 kb on + strandat 1620.484 kb on + strandat 1620.484 kb on + strandat 1620.484 kb on + strandat 1620.484 kb on + strandat 1620.485 kb on - strandat 1620.485 kb on - strandat 1620.485 kb on - strandat 1620.485 kb on - strandat 1620.485 kb on - strandat 1620.554 kb on - strandat 1620.554 kb on - strandat 1620.554 kb on - strandat 1620.631 kb on - strandat 1620.631 kb on - strandat 1620.827 kb on + strand, within PfGW456L13_1467at 1620.827 kb on + strand, within PfGW456L13_1467at 1620.828 kb on - strand, within PfGW456L13_1467at 1620.828 kb on - strand, within PfGW456L13_1467at 1620.828 kb on - strand, within PfGW456L13_1467at 1620.828 kb on - strand, within PfGW456L13_1467at 1620.828 kb on - strand, within PfGW456L13_1467at 1620.991 kb on + strand, within PfGW456L13_1467at 1620.991 kb on + strand, within PfGW456L13_1467at 1620.991 kb on + strand, within PfGW456L13_1467at 1620.991 kb on + strand, within PfGW456L13_1467at 1620.991 kb on + strand, within PfGW456L13_1467at 1620.991 kb on + strand, within PfGW456L13_1467at 1620.991 kb on + strand, within PfGW456L13_1467at 1620.991 kb on + strand, within PfGW456L13_1467at 1620.991 kb on + strand, within PfGW456L13_1467at 1620.991 kb on + strand, within PfGW456L13_1467at 1620.991 kb on + strand, within PfGW456L13_1467at 1620.991 kb on + strand, within PfGW456L13_1467at 1620.991 kb on + strand, within PfGW456L13_1467at 1620.992 kb on - strand, within PfGW456L13_1467at 1620.992 kb on - strand, within PfGW456L13_1467at 1620.992 kb on - strand, within PfGW456L13_1467at 1620.992 kb on - strand, within PfGW456L13_1467at 1620.992 kb on - strand, within PfGW456L13_1467at 1620.992 kb on - strand, within PfGW456L13_1467at 1620.992 kb on - strand, within PfGW456L13_1467at 1620.992 kb on - strand, within PfGW456L13_1467at 1620.992 kb on - strand, within PfGW456L13_1467at 1620.992 kb on - strand, within PfGW456L13_1467at 1620.992 kb on - strand, within PfGW456L13_1467at 1620.992 kb on - strand, within PfGW456L13_1467at 1620.997 kb on + strand, within PfGW456L13_1467at 1620.997 kb on + strand, within PfGW456L13_1467at 1620.998 kb on - strand, within PfGW456L13_1467at 1621.039 kb on - strandat 1621.077 kb on + strandat 1621.077 kb on + strandat 1621.077 kb on + strandat 1621.077 kb on + strandat 1621.077 kb on + strandat 1621.077 kb on + strandat 1621.077 kb on + strandat 1621.077 kb on + strandat 1621.077 kb on + strandat 1621.077 kb on + strandat 1621.078 kb on - strandat 1621.078 kb on - strandat 1621.078 kb on - strandat 1621.078 kb on - strandat 1621.078 kb on - strandat 1621.078 kb on - strandat 1621.078 kb on - strandat 1621.078 kb on - strandat 1621.078 kb on - strandat 1621.078 kb on - strandat 1621.078 kb on - strandat 1621.078 kb on - strandat 1621.078 kb on - strandat 1621.078 kb on - strandat 1621.079 kb on + strandat 1621.079 kb on + strandat 1621.079 kb on + strandat 1621.079 kb on + strandat 1621.080 kb on - strandat 1621.080 kb on - strandat 1621.081 kb on + strandat 1621.082 kb on - strandat 1621.089 kb on + strandat 1621.190 kb on + strandat 1621.190 kb on + strandat 1621.190 kb on + strandat 1621.190 kb on + strandat 1621.190 kb on + strandat 1621.190 kb on + strandat 1621.190 kb on + strandat 1621.191 kb on - strandat 1621.191 kb on - strandat 1621.191 kb on - strandat 1621.191 kb on - strandat 1621.191 kb on - strandat 1621.191 kb on - strandat 1621.191 kb on - strandat 1621.191 kb on - strandat 1621.191 kb on - strandat 1621.199 kb on - strandat 1622.400 kb on + strandat 1622.400 kb on + strandat 1622.400 kb on + strandat 1622.761 kb on + strandat 1623.150 kb on + strandat 1623.157 kb on + strandat 1623.157 kb on + strandat 1623.157 kb on + strandat 1623.157 kb on + strandat 1623.157 kb on + strandat 1623.157 kb on + strandat 1623.157 kb on + strandat 1623.157 kb on + strandat 1623.157 kb on + strandat 1623.157 kb on + strandat 1623.157 kb on + strandat 1623.157 kb on + strandat 1623.157 kb on + strandat 1623.161 kb on + strandat 1623.161 kb on + strandat 1623.203 kb on + strandat 1623.203 kb on + strandat 1623.203 kb on + strandat 1623.203 kb on + strandat 1623.203 kb on + strandat 1623.203 kb on + strandat 1623.203 kb on + strandat 1623.203 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Valine (C)
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1,620,306 - PfGW456L13_1466 0.28 -1.2
1,620,448 + PfGW456L13_1466 0.83 -0.4
1,620,448 + PfGW456L13_1466 0.83 +0.4
1,620,448 + PfGW456L13_1466 0.83 -1.2
1,620,449 - PfGW456L13_1466 0.83 -0.7
1,620,449 - PfGW456L13_1466 0.83 -0.7
1,620,484 + -0.1
1,620,484 + +0.6
1,620,484 + -1.5
1,620,484 + +0.0
1,620,484 + +0.5
1,620,484 + +0.4
1,620,484 + -0.3
1,620,484 + -0.5
1,620,485 - +0.2
1,620,485 - -0.8
1,620,485 - -0.6
1,620,485 - -0.1
1,620,485 - +0.0
1,620,554 - -0.5
1,620,554 - +0.1
1,620,554 - -1.3
1,620,631 - -0.0
1,620,631 - +0.6
1,620,827 + PfGW456L13_1467 0.38 +2.2
1,620,827 + PfGW456L13_1467 0.38 -3.6
1,620,828 - PfGW456L13_1467 0.39 +0.1
1,620,828 - PfGW456L13_1467 0.39 -0.0
1,620,828 - PfGW456L13_1467 0.39 +1.7
1,620,828 - PfGW456L13_1467 0.39 +0.6
1,620,828 - PfGW456L13_1467 0.39 -0.0
1,620,991 + PfGW456L13_1467 0.86 -0.8
1,620,991 + PfGW456L13_1467 0.86 +0.4
1,620,991 + PfGW456L13_1467 0.86 -0.7
1,620,991 + PfGW456L13_1467 0.86 -0.5
1,620,991 + PfGW456L13_1467 0.86 -1.5
1,620,991 + PfGW456L13_1467 0.86 +0.3
1,620,991 + PfGW456L13_1467 0.86 +0.4
1,620,991 + PfGW456L13_1467 0.86 -0.2
1,620,991 + PfGW456L13_1467 0.86 +0.9
1,620,991 + PfGW456L13_1467 0.86 -0.1
1,620,991 + PfGW456L13_1467 0.86 +1.0
1,620,991 + PfGW456L13_1467 0.86 -0.1
1,620,991 + PfGW456L13_1467 0.86 +0.2
1,620,992 - PfGW456L13_1467 0.87 +0.3
1,620,992 - PfGW456L13_1467 0.87 -0.6
1,620,992 - PfGW456L13_1467 0.87 -0.5
1,620,992 - PfGW456L13_1467 0.87 +1.0
1,620,992 - PfGW456L13_1467 0.87 +0.5
1,620,992 - PfGW456L13_1467 0.87 +0.0
1,620,992 - PfGW456L13_1467 0.87 -0.3
1,620,992 - PfGW456L13_1467 0.87 +1.0
1,620,992 - PfGW456L13_1467 0.87 +0.6
1,620,992 - PfGW456L13_1467 0.87 +0.0
1,620,992 - PfGW456L13_1467 0.87 -0.1
1,620,992 - PfGW456L13_1467 0.87 -0.0
1,620,997 + PfGW456L13_1467 0.88 +1.3
1,620,997 + PfGW456L13_1467 0.88 -0.3
1,620,998 - PfGW456L13_1467 0.88 -0.2
1,621,039 - +0.5
1,621,077 + +0.1
1,621,077 + -1.0
1,621,077 + +0.8
1,621,077 + +0.7
1,621,077 + -1.0
1,621,077 + +0.1
1,621,077 + -0.0
1,621,077 + -0.4
1,621,077 + +0.9
1,621,077 + +0.0
1,621,078 - -1.0
1,621,078 - -0.9
1,621,078 - -0.8
1,621,078 - -0.6
1,621,078 - -2.2
1,621,078 - +0.6
1,621,078 - -0.3
1,621,078 - +0.1
1,621,078 - -1.5
1,621,078 - -3.0
1,621,078 - +0.3
1,621,078 - +0.6
1,621,078 - -2.6
1,621,078 - +0.5
1,621,079 + +0.5
1,621,079 + -3.2
1,621,079 + -0.1
1,621,079 + +0.8
1,621,080 - -0.2
1,621,080 - +1.2
1,621,081 + -1.4
1,621,082 - +0.2
1,621,089 + -1.4
1,621,190 + +0.3
1,621,190 + -0.1
1,621,190 + +1.3
1,621,190 + -1.0
1,621,190 + -0.1
1,621,190 + -0.6
1,621,190 + +0.4
1,621,191 - -1.6
1,621,191 - +0.5
1,621,191 - -0.7
1,621,191 - +1.1
1,621,191 - -0.8
1,621,191 - +0.5
1,621,191 - +1.1
1,621,191 - +0.8
1,621,191 - +0.9
1,621,199 - -0.4
1,622,400 + -0.7
1,622,400 + +0.0
1,622,400 + -2.6
1,622,761 + -1.1
1,623,150 + -0.8
1,623,157 + +1.4
1,623,157 + +0.2
1,623,157 + -1.2
1,623,157 + -0.9
1,623,157 + -0.6
1,623,157 + -0.4
1,623,157 + -0.5
1,623,157 + +0.4
1,623,157 + +1.2
1,623,157 + -0.2
1,623,157 + +1.0
1,623,157 + -0.2
1,623,157 + -0.6
1,623,161 + +1.0
1,623,161 + +0.5
1,623,203 + +0.3
1,623,203 + +0.6
1,623,203 + +0.8
1,623,203 + +1.5
1,623,203 + +1.3
1,623,203 + +1.7
1,623,203 + -0.8
1,623,203 + +0.2

Or see this region's nucleotide sequence