Experiment: L-Valine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_1466 and PfGW456L13_1467 are separated by 204 nucleotides PfGW456L13_1467 and PfGW456L13_1468 are separated by 203 nucleotides PfGW456L13_1468 and PfGW456L13_1469 are separated by 239 nucleotides PfGW456L13_1469 and PfGW456L13_1470 are separated by 35 nucleotides
PfGW456L13_1466 - FIG00953595: hypothetical protein, at 1,620,234 to 1,620,491
_1466
PfGW456L13_1467 - Alkylphosphonate utilization operon protein PhnA, at 1,620,696 to 1,621,037
_1467
PfGW456L13_1468 - Octaprenyl diphosphate synthase (EC 2.5.1.90) / Dimethylallyltransferase (EC 2.5.1.1) / (2E,6E)-farnesyl diphosphate synthase (EC 2.5.1.10) / Geranylgeranyl diphosphate synthase (EC 2.5.1.29), at 1,621,241 to 1,622,209
_1468
PfGW456L13_1469 - LSU ribosomal protein L21p, at 1,622,449 to 1,622,763
_1469
PfGW456L13_1470 - LSU ribosomal protein L27p, at 1,622,799 to 1,623,056
_1470
Position (kb)
1621
1622
1623 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1620.306 kb on - strand, within PfGW456L13_1466 at 1620.448 kb on + strand, within PfGW456L13_1466 at 1620.448 kb on + strand, within PfGW456L13_1466 at 1620.448 kb on + strand, within PfGW456L13_1466 at 1620.449 kb on - strand, within PfGW456L13_1466 at 1620.449 kb on - strand, within PfGW456L13_1466 at 1620.484 kb on + strand at 1620.484 kb on + strand at 1620.484 kb on + strand at 1620.484 kb on + strand at 1620.484 kb on + strand at 1620.484 kb on + strand at 1620.484 kb on + strand at 1620.484 kb on + strand at 1620.485 kb on - strand at 1620.485 kb on - strand at 1620.485 kb on - strand at 1620.485 kb on - strand at 1620.485 kb on - strand at 1620.554 kb on - strand at 1620.554 kb on - strand at 1620.554 kb on - strand at 1620.631 kb on - strand at 1620.631 kb on - strand at 1620.827 kb on + strand, within PfGW456L13_1467 at 1620.827 kb on + strand, within PfGW456L13_1467 at 1620.828 kb on - strand, within PfGW456L13_1467 at 1620.828 kb on - strand, within PfGW456L13_1467 at 1620.828 kb on - strand, within PfGW456L13_1467 at 1620.828 kb on - strand, within PfGW456L13_1467 at 1620.828 kb on - strand, within PfGW456L13_1467 at 1620.991 kb on + strand, within PfGW456L13_1467 at 1620.991 kb on + strand, within PfGW456L13_1467 at 1620.991 kb on + strand, within PfGW456L13_1467 at 1620.991 kb on + strand, within PfGW456L13_1467 at 1620.991 kb on + strand, within PfGW456L13_1467 at 1620.991 kb on + strand, within PfGW456L13_1467 at 1620.991 kb on + strand, within PfGW456L13_1467 at 1620.991 kb on + strand, within PfGW456L13_1467 at 1620.991 kb on + strand, within PfGW456L13_1467 at 1620.991 kb on + strand, within PfGW456L13_1467 at 1620.991 kb on + strand, within PfGW456L13_1467 at 1620.991 kb on + strand, within PfGW456L13_1467 at 1620.991 kb on + strand, within PfGW456L13_1467 at 1620.992 kb on - strand, within PfGW456L13_1467 at 1620.992 kb on - strand, within PfGW456L13_1467 at 1620.992 kb on - strand, within PfGW456L13_1467 at 1620.992 kb on - strand, within PfGW456L13_1467 at 1620.992 kb on - strand, within PfGW456L13_1467 at 1620.992 kb on - strand, within PfGW456L13_1467 at 1620.992 kb on - strand, within PfGW456L13_1467 at 1620.992 kb on - strand, within PfGW456L13_1467 at 1620.992 kb on - strand, within PfGW456L13_1467 at 1620.992 kb on - strand, within PfGW456L13_1467 at 1620.992 kb on - strand, within PfGW456L13_1467 at 1620.992 kb on - strand, within PfGW456L13_1467 at 1620.997 kb on + strand, within PfGW456L13_1467 at 1620.997 kb on + strand, within PfGW456L13_1467 at 1620.998 kb on - strand, within PfGW456L13_1467 at 1621.039 kb on - strand at 1621.077 kb on + strand at 1621.077 kb on + strand at 1621.077 kb on + strand at 1621.077 kb on + strand at 1621.077 kb on + strand at 1621.077 kb on + strand at 1621.077 kb on + strand at 1621.077 kb on + strand at 1621.077 kb on + strand at 1621.077 kb on + strand at 1621.078 kb on - strand at 1621.078 kb on - strand at 1621.078 kb on - strand at 1621.078 kb on - strand at 1621.078 kb on - strand at 1621.078 kb on - strand at 1621.078 kb on - strand at 1621.078 kb on - strand at 1621.078 kb on - strand at 1621.078 kb on - strand at 1621.078 kb on - strand at 1621.078 kb on - strand at 1621.078 kb on - strand at 1621.078 kb on - strand at 1621.079 kb on + strand at 1621.079 kb on + strand at 1621.079 kb on + strand at 1621.079 kb on + strand at 1621.080 kb on - strand at 1621.080 kb on - strand at 1621.081 kb on + strand at 1621.082 kb on - strand at 1621.089 kb on + strand at 1621.190 kb on + strand at 1621.190 kb on + strand at 1621.190 kb on + strand at 1621.190 kb on + strand at 1621.190 kb on + strand at 1621.190 kb on + strand at 1621.190 kb on + strand at 1621.191 kb on - strand at 1621.191 kb on - strand at 1621.191 kb on - strand at 1621.191 kb on - strand at 1621.191 kb on - strand at 1621.191 kb on - strand at 1621.191 kb on - strand at 1621.191 kb on - strand at 1621.191 kb on - strand at 1621.199 kb on - strand at 1622.400 kb on + strand at 1622.400 kb on + strand at 1622.400 kb on + strand at 1622.761 kb on + strand at 1623.150 kb on + strand at 1623.157 kb on + strand at 1623.157 kb on + strand at 1623.157 kb on + strand at 1623.157 kb on + strand at 1623.157 kb on + strand at 1623.157 kb on + strand at 1623.157 kb on + strand at 1623.157 kb on + strand at 1623.157 kb on + strand at 1623.157 kb on + strand at 1623.157 kb on + strand at 1623.157 kb on + strand at 1623.157 kb on + strand at 1623.161 kb on + strand at 1623.161 kb on + strand at 1623.203 kb on + strand at 1623.203 kb on + strand at 1623.203 kb on + strand at 1623.203 kb on + strand at 1623.203 kb on + strand at 1623.203 kb on + strand at 1623.203 kb on + strand at 1623.203 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Valine (C) remove 1,620,306 - PfGW456L13_1466 0.28 -1.2 1,620,448 + PfGW456L13_1466 0.83 -0.4 1,620,448 + PfGW456L13_1466 0.83 +0.4 1,620,448 + PfGW456L13_1466 0.83 -1.2 1,620,449 - PfGW456L13_1466 0.83 -0.7 1,620,449 - PfGW456L13_1466 0.83 -0.7 1,620,484 + -0.1 1,620,484 + +0.6 1,620,484 + -1.5 1,620,484 + +0.0 1,620,484 + +0.5 1,620,484 + +0.4 1,620,484 + -0.3 1,620,484 + -0.5 1,620,485 - +0.2 1,620,485 - -0.8 1,620,485 - -0.6 1,620,485 - -0.1 1,620,485 - +0.0 1,620,554 - -0.5 1,620,554 - +0.1 1,620,554 - -1.3 1,620,631 - -0.0 1,620,631 - +0.6 1,620,827 + PfGW456L13_1467 0.38 +2.2 1,620,827 + PfGW456L13_1467 0.38 -3.6 1,620,828 - PfGW456L13_1467 0.39 +0.1 1,620,828 - PfGW456L13_1467 0.39 -0.0 1,620,828 - PfGW456L13_1467 0.39 +1.7 1,620,828 - PfGW456L13_1467 0.39 +0.6 1,620,828 - PfGW456L13_1467 0.39 -0.0 1,620,991 + PfGW456L13_1467 0.86 -0.8 1,620,991 + PfGW456L13_1467 0.86 +0.4 1,620,991 + PfGW456L13_1467 0.86 -0.7 1,620,991 + PfGW456L13_1467 0.86 -0.5 1,620,991 + PfGW456L13_1467 0.86 -1.5 1,620,991 + PfGW456L13_1467 0.86 +0.3 1,620,991 + PfGW456L13_1467 0.86 +0.4 1,620,991 + PfGW456L13_1467 0.86 -0.2 1,620,991 + PfGW456L13_1467 0.86 +0.9 1,620,991 + PfGW456L13_1467 0.86 -0.1 1,620,991 + PfGW456L13_1467 0.86 +1.0 1,620,991 + PfGW456L13_1467 0.86 -0.1 1,620,991 + PfGW456L13_1467 0.86 +0.2 1,620,992 - PfGW456L13_1467 0.87 +0.3 1,620,992 - PfGW456L13_1467 0.87 -0.6 1,620,992 - PfGW456L13_1467 0.87 -0.5 1,620,992 - PfGW456L13_1467 0.87 +1.0 1,620,992 - PfGW456L13_1467 0.87 +0.5 1,620,992 - PfGW456L13_1467 0.87 +0.0 1,620,992 - PfGW456L13_1467 0.87 -0.3 1,620,992 - PfGW456L13_1467 0.87 +1.0 1,620,992 - PfGW456L13_1467 0.87 +0.6 1,620,992 - PfGW456L13_1467 0.87 +0.0 1,620,992 - PfGW456L13_1467 0.87 -0.1 1,620,992 - PfGW456L13_1467 0.87 -0.0 1,620,997 + PfGW456L13_1467 0.88 +1.3 1,620,997 + PfGW456L13_1467 0.88 -0.3 1,620,998 - PfGW456L13_1467 0.88 -0.2 1,621,039 - +0.5 1,621,077 + +0.1 1,621,077 + -1.0 1,621,077 + +0.8 1,621,077 + +0.7 1,621,077 + -1.0 1,621,077 + +0.1 1,621,077 + -0.0 1,621,077 + -0.4 1,621,077 + +0.9 1,621,077 + +0.0 1,621,078 - -1.0 1,621,078 - -0.9 1,621,078 - -0.8 1,621,078 - -0.6 1,621,078 - -2.2 1,621,078 - +0.6 1,621,078 - -0.3 1,621,078 - +0.1 1,621,078 - -1.5 1,621,078 - -3.0 1,621,078 - +0.3 1,621,078 - +0.6 1,621,078 - -2.6 1,621,078 - +0.5 1,621,079 + +0.5 1,621,079 + -3.2 1,621,079 + -0.1 1,621,079 + +0.8 1,621,080 - -0.2 1,621,080 - +1.2 1,621,081 + -1.4 1,621,082 - +0.2 1,621,089 + -1.4 1,621,190 + +0.3 1,621,190 + -0.1 1,621,190 + +1.3 1,621,190 + -1.0 1,621,190 + -0.1 1,621,190 + -0.6 1,621,190 + +0.4 1,621,191 - -1.6 1,621,191 - +0.5 1,621,191 - -0.7 1,621,191 - +1.1 1,621,191 - -0.8 1,621,191 - +0.5 1,621,191 - +1.1 1,621,191 - +0.8 1,621,191 - +0.9 1,621,199 - -0.4 1,622,400 + -0.7 1,622,400 + +0.0 1,622,400 + -2.6 1,622,761 + -1.1 1,623,150 + -0.8 1,623,157 + +1.4 1,623,157 + +0.2 1,623,157 + -1.2 1,623,157 + -0.9 1,623,157 + -0.6 1,623,157 + -0.4 1,623,157 + -0.5 1,623,157 + +0.4 1,623,157 + +1.2 1,623,157 + -0.2 1,623,157 + +1.0 1,623,157 + -0.2 1,623,157 + -0.6 1,623,161 + +1.0 1,623,161 + +0.5 1,623,203 + +0.3 1,623,203 + +0.6 1,623,203 + +0.8 1,623,203 + +1.5 1,623,203 + +1.3 1,623,203 + +1.7 1,623,203 + -0.8 1,623,203 + +0.2
Or see this region's nucleotide sequence