Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS24600

Experiment: succinate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	succinate (C)
5,509,515	-		PFLU_RS24595	0.56	-0.5
5,509,515	-		PFLU_RS24595	0.56	+0.4
5,509,535	-		PFLU_RS24595	0.58	-0.5
5,509,617	+		PFLU_RS24595	0.64	+0.4
5,509,617	+		PFLU_RS24595	0.64	+0.7
5,509,618	-		PFLU_RS24595	0.64	+1.0
5,509,618	-		PFLU_RS24595	0.64	+0.5
5,509,618	-		PFLU_RS24595	0.64	+0.3
5,509,618	-		PFLU_RS24595	0.64	-0.1
5,509,618	-		PFLU_RS24595	0.64	+0.5
5,509,618	-		PFLU_RS24595	0.64	+0.2
5,509,739	+		PFLU_RS24595	0.74	-1.0
5,509,740	-		PFLU_RS24595	0.74	+0.4
5,509,740	-		PFLU_RS24595	0.74	-0.3
5,509,821	+		PFLU_RS24595	0.81	-1.5
5,509,821	+		PFLU_RS24595	0.81	+0.2
5,509,821	+		PFLU_RS24595	0.81	-0.1
5,509,822	-		PFLU_RS24595	0.81	+1.0
5,509,822	-		PFLU_RS24595	0.81	-1.3
5,509,822	-		PFLU_RS24595	0.81	-0.1
5,509,822	-		PFLU_RS24595	0.81	+0.7
5,509,822	-		PFLU_RS24595	0.81	-1.7
5,509,823	+		PFLU_RS24595	0.81	-0.4
5,509,823	+		PFLU_RS24595	0.81	-0.0
5,509,824	-		PFLU_RS24595	0.81	-0.8
5,509,824	-		PFLU_RS24595	0.81	-1.3
5,509,824	-		PFLU_RS24595	0.81	+0.8
5,509,824	-		PFLU_RS24595	0.81	-2.4
5,509,824	-		PFLU_RS24595	0.81	+0.1
5,509,824	-		PFLU_RS24595	0.81	+0.4
5,510,056	-				+0.3
5,510,138	+				+0.0
5,510,139	-				+0.2
5,510,139	-				-0.9
5,510,173	+				+0.8
5,510,174	-				-1.8
5,510,215	+				+0.1
5,510,215	+				+1.1
5,510,215	+				-0.2
5,510,215	+				+0.9
5,510,215	+				-1.0
5,510,215	+				-0.4
5,510,215	+				-0.3
5,510,215	+				-0.7
5,510,215	+				-0.2
5,510,215	+				+0.3
5,510,215	+				-0.4
5,510,215	+				+0.6
5,510,215	+				+1.3
5,510,215	+				+1.2
5,510,215	+				+1.5
5,510,215	+				-2.8
5,510,215	+				-0.3
5,510,215	+				-0.5
5,510,215	+				-1.4
5,510,215	+				+0.7
5,510,216	-				-1.9
5,510,216	-				+0.7
5,510,216	-				+0.5
5,510,216	-				+1.1
5,510,216	-				+0.2
5,510,216	-				+0.0
5,510,216	-				+0.1
5,510,216	-				+0.3
5,510,216	-				-1.3
5,510,216	-				+0.0
5,510,216	-				-0.6
5,510,216	-				-0.7
5,510,217	+				-2.1
5,510,218	-				-0.4
5,510,232	-				+0.4
5,510,289	-				-0.8
5,510,289	-				-0.7
5,510,289	-				-0.8
5,510,333	+				-1.3
5,510,333	+				-1.0
5,510,334	-				-0.3
5,510,334	-				+1.9
5,510,363	+				+0.9
5,510,363	+				+1.4
5,510,366	+				+0.9
5,510,366	+				+1.1
5,510,366	+				+1.0
5,510,366	+				-0.2
5,510,366	+				+0.1
5,510,366	+				-2.0
5,510,367	-				+0.4
5,510,367	-				+0.6
5,510,367	-				-1.0
5,510,367	-				-0.5
5,510,420	+				-1.1
5,510,420	+				+0.2
5,510,420	+				-0.9
5,510,421	-				-0.6
5,510,421	-				-0.8
5,510,421	-				-0.9
5,510,421	-				+0.5
5,510,421	-				-0.8
5,510,513	+				-0.5
5,510,513	+				+0.0
5,510,513	+				+1.2
5,510,513	+				-1.3
5,510,513	+				+0.4
5,510,513	+				-0.4
5,510,513	+				+1.9
5,510,513	+				+0.2
5,510,513	+				-1.3
5,510,514	-				-0.4
5,510,514	-				+0.6
5,510,514	-				+0.4
5,510,514	-				+0.3
5,510,514	-				-1.0
5,510,514	-				+0.5
5,510,514	-				-1.1
5,510,514	-				+0.3
5,510,515	+				+0.9
5,510,515	+				+0.6
5,510,515	+				+1.3
5,510,515	+				+0.5
5,510,516	-				+0.4
5,510,519	+				+0.0
5,510,519	+				-0.2
5,510,519	+				+0.9
5,510,519	+				-2.3
5,510,519	+				-0.2
5,510,519	+				-2.3
5,510,519	+				+0.1
5,510,520	-				-1.5
5,510,520	-				-0.1
5,510,520	-				-2.1
5,510,520	-				-3.1
5,510,520	-				-1.2
5,510,520	-				-0.3
5,510,520	-				+0.1
5,510,677	+		PFLU_RS24600	0.21	-0.5
5,510,719	+		PFLU_RS24600	0.24	-0.1
5,510,719	+		PFLU_RS24600	0.24	-0.7
5,510,720	-		PFLU_RS24600	0.24	+1.9
5,510,747	+		PFLU_RS24600	0.26	+0.6
5,510,748	-		PFLU_RS24600	0.26	-0.2
5,510,782	-		PFLU_RS24600	0.29	+0.2
5,510,782	-		PFLU_RS24600	0.29	+1.1
5,510,787	+		PFLU_RS24600	0.29	+0.1
5,510,787	+		PFLU_RS24600	0.29	-1.6
5,510,787	+		PFLU_RS24600	0.29	+1.4
5,510,787	+		PFLU_RS24600	0.29	-1.3
5,510,788	-		PFLU_RS24600	0.29	-0.1
5,510,788	-		PFLU_RS24600	0.29	+1.9
5,510,788	-		PFLU_RS24600	0.29	+1.2
5,511,038	+		PFLU_RS24600	0.48	-0.5
5,511,038	+		PFLU_RS24600	0.48	+0.1
5,511,038	+		PFLU_RS24600	0.48	-1.5
5,511,039	-		PFLU_RS24600	0.48	-0.9
5,511,039	-		PFLU_RS24600	0.48	-0.7
5,511,039	-		PFLU_RS24600	0.48	+0.2
5,511,039	-		PFLU_RS24600	0.48	-0.3
5,511,179	+		PFLU_RS24600	0.59	-0.1
5,511,191	+		PFLU_RS24600	0.60	+0.8
5,511,191	+		PFLU_RS24600	0.60	-0.1
5,511,191	+		PFLU_RS24600	0.60	+0.3
5,511,191	+		PFLU_RS24600	0.60	+1.0
5,511,191	+		PFLU_RS24600	0.60	-0.7
5,511,192	-		PFLU_RS24600	0.60	+0.9
5,511,192	-		PFLU_RS24600	0.60	+0.3
5,511,192	-		PFLU_RS24600	0.60	-0.2
5,511,192	-		PFLU_RS24600	0.60	-0.1
5,511,192	-		PFLU_RS24600	0.60	+1.1
5,511,192	-		PFLU_RS24600	0.60	+0.1
5,511,192	-		PFLU_RS24600	0.60	+1.1
5,511,239	+		PFLU_RS24600	0.63	-0.8
5,511,239	+		PFLU_RS24600	0.63	+0.3
5,511,240	-		PFLU_RS24600	0.63	-0.9
5,511,241	+		PFLU_RS24600	0.64	+0.5
5,511,385	+		PFLU_RS24600	0.75	+1.7
5,511,385	+		PFLU_RS24600	0.75	+0.3
5,511,386	-		PFLU_RS24600	0.75	-1.1
5,511,522	-		PFLU_RS24600	0.85	+0.5
5,511,522	-		PFLU_RS24600	0.85	-0.8
5,511,522	-		PFLU_RS24600	0.85	+0.2
5,511,524	-		PFLU_RS24600	0.85	-0.7
5,511,524	-		PFLU_RS24600	0.85	-1.1
5,511,542	+		PFLU_RS24600	0.86	+0.6
5,511,542	+		PFLU_RS24600	0.86	-0.3
5,511,542	+		PFLU_RS24600	0.86	-0.0
5,511,542	+		PFLU_RS24600	0.86	-0.2
5,511,542	+		PFLU_RS24600	0.86	+0.9
5,511,542	+		PFLU_RS24600	0.86	-1.0
5,511,542	+		PFLU_RS24600	0.86	-0.1
5,511,543	-		PFLU_RS24600	0.87	-2.8
5,511,543	-		PFLU_RS24600	0.87	+0.2
5,511,543	-		PFLU_RS24600	0.87	+0.3
5,511,543	-		PFLU_RS24600	0.87	-1.5
5,511,543	-		PFLU_RS24600	0.87	-1.3
5,511,543	-		PFLU_RS24600	0.87	+0.2
5,511,620	+				-0.7
5,511,620	+				-0.5
5,511,620	+				-0.7
5,511,620	+				+0.3
5,511,620	+				+1.3
5,511,620	+				+0.1
5,511,621	-				+0.6
5,511,621	-				+0.8
5,511,621	-				+1.6
5,511,632	+				+0.3
5,511,632	+				+0.1
5,511,720	-				-2.5
5,511,858	-				+1.0
5,511,883	+				+1.2
5,511,884	-				+0.5
5,512,608	+		PFLU_RS24605	0.64	-0.8
5,512,608	+		PFLU_RS24605	0.64	+0.6
5,512,608	+		PFLU_RS24605	0.64	-0.7
5,512,608	+		PFLU_RS24605	0.64	+0.4
5,512,608	+		PFLU_RS24605	0.64	-0.0
5,512,608	+		PFLU_RS24605	0.64	+1.1
5,512,609	-		PFLU_RS24605	0.64	+1.1
5,512,609	-		PFLU_RS24605	0.64	-0.4
5,512,609	-		PFLU_RS24605	0.64	+0.1
5,512,708	+		PFLU_RS24605	0.73	-0.0