Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS21680 and PFLU_RS21685 are separated by 44 nucleotides PFLU_RS21685 and PFLU_RS21690 are separated by 18 nucleotides PFLU_RS21690 and PFLU_RS21695 are separated by 132 nucleotides PFLU_RS21695 and PFLU_RS21700 are separated by 3 nucleotides PFLU_RS21700 and PFLU_RS21705 are separated by 4 nucleotides
PFLU_RS21680: PFLU_RS21680 - hypothetical protein, at 4,887,497 to 4,887,739
_RS21680
PFLU_RS21685: PFLU_RS21685 - cold-shock protein, at 4,887,784 to 4,887,984
_RS21685
PFLU_RS21690: PFLU_RS21690 - DNA-binding protein, at 4,888,003 to 4,888,215
_RS21690
PFLU_RS21695: PFLU_RS21695 - flagellar biosynthesis protein FlhB, at 4,888,348 to 4,889,484
_RS21695
PFLU_RS21700: PFLU_RS21700 - flagellar type III secretion system protein FliR, at 4,889,488 to 4,890,273
_RS21700
PFLU_RS21705: PFLU_RS21705 - flagellar biosynthesis protein FliQ, at 4,890,278 to 4,890,547
_RS21705
Position (kb) 4888
4889
4890 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4887.349 kb on + strand at 4887.349 kb on + strand at 4887.349 kb on + strand at 4887.349 kb on + strand at 4887.349 kb on + strand at 4887.349 kb on + strand at 4887.349 kb on + strand at 4887.350 kb on - strand at 4887.350 kb on - strand at 4887.350 kb on - strand at 4887.350 kb on - strand at 4887.362 kb on + strand at 4887.363 kb on - strand at 4887.363 kb on - strand at 4887.393 kb on - strand at 4887.479 kb on + strand at 4887.479 kb on + strand at 4887.479 kb on + strand at 4887.479 kb on + strand at 4887.479 kb on + strand at 4887.479 kb on + strand at 4887.479 kb on + strand at 4887.480 kb on - strand at 4887.480 kb on - strand at 4887.480 kb on - strand at 4887.480 kb on - strand at 4887.480 kb on - strand at 4887.480 kb on - strand at 4887.480 kb on - strand at 4887.480 kb on - strand at 4887.787 kb on + strand at 4887.787 kb on + strand at 4887.787 kb on + strand at 4887.787 kb on + strand at 4887.788 kb on - strand at 4887.788 kb on - strand at 4887.788 kb on - strand at 4887.788 kb on - strand at 4887.907 kb on + strand, within PFLU_RS21685 at 4887.907 kb on + strand, within PFLU_RS21685 at 4887.907 kb on + strand, within PFLU_RS21685 at 4887.907 kb on + strand, within PFLU_RS21685 at 4887.907 kb on + strand, within PFLU_RS21685 at 4887.907 kb on + strand, within PFLU_RS21685 at 4887.907 kb on + strand, within PFLU_RS21685 at 4887.907 kb on + strand, within PFLU_RS21685 at 4887.907 kb on + strand, within PFLU_RS21685 at 4887.907 kb on + strand, within PFLU_RS21685 at 4887.907 kb on + strand, within PFLU_RS21685 at 4887.907 kb on + strand, within PFLU_RS21685 at 4887.907 kb on + strand, within PFLU_RS21685 at 4887.907 kb on + strand, within PFLU_RS21685 at 4887.907 kb on + strand, within PFLU_RS21685 at 4887.907 kb on + strand, within PFLU_RS21685 at 4887.907 kb on + strand, within PFLU_RS21685 at 4887.907 kb on + strand, within PFLU_RS21685 at 4887.907 kb on + strand, within PFLU_RS21685 at 4887.907 kb on + strand, within PFLU_RS21685 at 4887.908 kb on - strand, within PFLU_RS21685 at 4887.908 kb on - strand, within PFLU_RS21685 at 4887.908 kb on - strand, within PFLU_RS21685 at 4887.908 kb on - strand, within PFLU_RS21685 at 4887.908 kb on - strand, within PFLU_RS21685 at 4887.908 kb on - strand, within PFLU_RS21685 at 4887.908 kb on - strand, within PFLU_RS21685 at 4887.908 kb on - strand, within PFLU_RS21685 at 4887.908 kb on - strand, within PFLU_RS21685 at 4887.908 kb on - strand, within PFLU_RS21685 at 4887.908 kb on - strand, within PFLU_RS21685 at 4887.908 kb on - strand, within PFLU_RS21685 at 4887.934 kb on - strand, within PFLU_RS21685 at 4887.957 kb on + strand, within PFLU_RS21685 at 4887.958 kb on - strand, within PFLU_RS21685 at 4887.958 kb on - strand, within PFLU_RS21685 at 4888.185 kb on - strand, within PFLU_RS21690 at 4888.263 kb on + strand at 4888.263 kb on + strand at 4888.263 kb on + strand at 4888.266 kb on + strand at 4888.266 kb on + strand at 4888.266 kb on + strand at 4888.266 kb on + strand at 4888.266 kb on + strand at 4888.266 kb on + strand at 4888.266 kb on + strand at 4888.266 kb on + strand at 4888.267 kb on - strand at 4888.267 kb on - strand at 4888.267 kb on - strand at 4888.267 kb on - strand at 4888.311 kb on + strand at 4888.312 kb on - strand at 4888.445 kb on + strand at 4888.446 kb on - strand at 4888.453 kb on + strand at 4888.453 kb on + strand at 4888.454 kb on - strand at 4888.472 kb on + strand, within PFLU_RS21695 at 4888.472 kb on + strand, within PFLU_RS21695 at 4888.472 kb on + strand, within PFLU_RS21695 at 4888.473 kb on - strand, within PFLU_RS21695 at 4888.473 kb on - strand, within PFLU_RS21695 at 4888.511 kb on + strand, within PFLU_RS21695 at 4888.511 kb on + strand, within PFLU_RS21695 at 4888.511 kb on + strand, within PFLU_RS21695 at 4888.511 kb on + strand, within PFLU_RS21695 at 4888.512 kb on - strand, within PFLU_RS21695 at 4888.512 kb on - strand, within PFLU_RS21695 at 4888.512 kb on - strand, within PFLU_RS21695 at 4888.646 kb on + strand, within PFLU_RS21695 at 4888.647 kb on - strand, within PFLU_RS21695 at 4888.647 kb on - strand, within PFLU_RS21695 at 4888.664 kb on + strand, within PFLU_RS21695 at 4888.664 kb on + strand, within PFLU_RS21695 at 4888.664 kb on + strand, within PFLU_RS21695 at 4889.079 kb on + strand, within PFLU_RS21695 at 4889.080 kb on - strand, within PFLU_RS21695 at 4889.080 kb on - strand, within PFLU_RS21695 at 4889.240 kb on + strand, within PFLU_RS21695 at 4889.241 kb on - strand, within PFLU_RS21695 at 4889.241 kb on - strand, within PFLU_RS21695 at 4889.336 kb on + strand, within PFLU_RS21695 at 4889.336 kb on + strand, within PFLU_RS21695 at 4889.336 kb on + strand, within PFLU_RS21695 at 4889.336 kb on + strand, within PFLU_RS21695 at 4889.336 kb on + strand, within PFLU_RS21695 at 4889.336 kb on + strand, within PFLU_RS21695 at 4889.337 kb on - strand, within PFLU_RS21695 at 4889.337 kb on - strand, within PFLU_RS21695 at 4889.337 kb on - strand, within PFLU_RS21695 at 4889.512 kb on + strand at 4889.512 kb on + strand at 4889.512 kb on + strand at 4889.512 kb on + strand at 4889.512 kb on + strand at 4889.512 kb on + strand at 4889.512 kb on + strand at 4889.512 kb on + strand at 4889.512 kb on + strand at 4889.512 kb on + strand at 4889.513 kb on - strand at 4889.513 kb on - strand at 4889.513 kb on - strand at 4889.513 kb on - strand at 4889.547 kb on - strand at 4889.547 kb on - strand at 4889.547 kb on - strand at 4889.547 kb on - strand at 4889.547 kb on - strand at 4889.656 kb on + strand, within PFLU_RS21700 at 4889.670 kb on + strand, within PFLU_RS21700 at 4889.670 kb on + strand, within PFLU_RS21700 at 4889.691 kb on + strand, within PFLU_RS21700 at 4889.692 kb on - strand, within PFLU_RS21700 at 4890.114 kb on + strand, within PFLU_RS21700 at 4890.114 kb on + strand, within PFLU_RS21700 at 4890.114 kb on + strand, within PFLU_RS21700 at 4890.114 kb on + strand, within PFLU_RS21700 at 4890.115 kb on - strand, within PFLU_RS21700 at 4890.115 kb on - strand, within PFLU_RS21700 at 4890.115 kb on - strand, within PFLU_RS21700 at 4890.118 kb on - strand, within PFLU_RS21700 at 4890.118 kb on - strand, within PFLU_RS21700 at 4890.131 kb on + strand, within PFLU_RS21700 at 4890.131 kb on + strand, within PFLU_RS21700 at 4890.132 kb on - strand, within PFLU_RS21700 at 4890.298 kb on + strand at 4890.299 kb on - strand at 4890.306 kb on + strand, within PFLU_RS21705 at 4890.306 kb on + strand, within PFLU_RS21705 at 4890.306 kb on + strand, within PFLU_RS21705 at 4890.307 kb on - strand, within PFLU_RS21705 at 4890.307 kb on - strand, within PFLU_RS21705 at 4890.307 kb on - strand, within PFLU_RS21705 at 4890.307 kb on - strand, within PFLU_RS21705 at 4890.321 kb on + strand, within PFLU_RS21705 at 4890.321 kb on + strand, within PFLU_RS21705 at 4890.321 kb on + strand, within PFLU_RS21705 at 4890.321 kb on + strand, within PFLU_RS21705 at 4890.321 kb on + strand, within PFLU_RS21705 at 4890.321 kb on + strand, within PFLU_RS21705 at 4890.321 kb on + strand, within PFLU_RS21705 at 4890.321 kb on + strand, within PFLU_RS21705 at 4890.321 kb on + strand, within PFLU_RS21705 at 4890.321 kb on + strand, within PFLU_RS21705 at 4890.322 kb on - strand, within PFLU_RS21705 at 4890.322 kb on - strand, within PFLU_RS21705 at 4890.322 kb on - strand, within PFLU_RS21705 at 4890.322 kb on - strand, within PFLU_RS21705 at 4890.322 kb on - strand, within PFLU_RS21705 at 4890.322 kb on - strand, within PFLU_RS21705 at 4890.322 kb on - strand, within PFLU_RS21705 at 4890.322 kb on - strand, within PFLU_RS21705 at 4890.322 kb on - strand, within PFLU_RS21705
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 4,887,349 + -2.0 4,887,349 + +0.2 4,887,349 + -0.9 4,887,349 + +0.8 4,887,349 + +0.2 4,887,349 + -0.3 4,887,349 + -0.4 4,887,350 - -0.7 4,887,350 - -0.4 4,887,350 - -2.2 4,887,350 - -0.0 4,887,362 + -1.5 4,887,363 - +0.6 4,887,363 - -0.2 4,887,393 - -0.4 4,887,479 + -1.4 4,887,479 + -1.2 4,887,479 + +1.0 4,887,479 + +0.0 4,887,479 + +1.0 4,887,479 + -1.1 4,887,479 + -3.6 4,887,480 - -2.2 4,887,480 - +1.1 4,887,480 - -0.1 4,887,480 - +1.1 4,887,480 - +0.9 4,887,480 - -0.0 4,887,480 - -1.2 4,887,480 - -0.0 4,887,787 + +0.4 4,887,787 + -0.7 4,887,787 + +0.1 4,887,787 + -1.2 4,887,788 - -0.3 4,887,788 - +0.6 4,887,788 - +0.1 4,887,788 - +1.5 4,887,907 + PFLU_RS21685 0.61 +1.1 4,887,907 + PFLU_RS21685 0.61 -1.0 4,887,907 + PFLU_RS21685 0.61 +0.5 4,887,907 + PFLU_RS21685 0.61 +0.7 4,887,907 + PFLU_RS21685 0.61 +0.3 4,887,907 + PFLU_RS21685 0.61 -1.0 4,887,907 + PFLU_RS21685 0.61 +0.0 4,887,907 + PFLU_RS21685 0.61 +1.6 4,887,907 + PFLU_RS21685 0.61 +1.5 4,887,907 + PFLU_RS21685 0.61 -0.6 4,887,907 + PFLU_RS21685 0.61 +1.5 4,887,907 + PFLU_RS21685 0.61 +0.5 4,887,907 + PFLU_RS21685 0.61 +1.1 4,887,907 + PFLU_RS21685 0.61 +0.6 4,887,907 + PFLU_RS21685 0.61 -0.4 4,887,907 + PFLU_RS21685 0.61 -2.8 4,887,907 + PFLU_RS21685 0.61 -0.1 4,887,907 + PFLU_RS21685 0.61 +0.7 4,887,907 + PFLU_RS21685 0.61 +0.7 4,887,907 + PFLU_RS21685 0.61 -1.2 4,887,908 - PFLU_RS21685 0.62 -0.6 4,887,908 - PFLU_RS21685 0.62 +0.8 4,887,908 - PFLU_RS21685 0.62 +1.8 4,887,908 - PFLU_RS21685 0.62 +1.5 4,887,908 - PFLU_RS21685 0.62 +0.4 4,887,908 - PFLU_RS21685 0.62 +1.0 4,887,908 - PFLU_RS21685 0.62 +0.1 4,887,908 - PFLU_RS21685 0.62 -0.1 4,887,908 - PFLU_RS21685 0.62 +0.1 4,887,908 - PFLU_RS21685 0.62 +1.3 4,887,908 - PFLU_RS21685 0.62 +0.6 4,887,908 - PFLU_RS21685 0.62 +1.5 4,887,934 - PFLU_RS21685 0.75 -0.5 4,887,957 + PFLU_RS21685 0.86 +0.0 4,887,958 - PFLU_RS21685 0.87 +0.5 4,887,958 - PFLU_RS21685 0.87 +0.7 4,888,185 - PFLU_RS21690 0.85 +0.4 4,888,263 + -1.0 4,888,263 + +0.3 4,888,263 + +1.5 4,888,266 + -0.6 4,888,266 + +0.2 4,888,266 + +0.9 4,888,266 + +1.6 4,888,266 + -0.7 4,888,266 + +1.4 4,888,266 + +0.6 4,888,266 + +0.5 4,888,267 - -0.5 4,888,267 - +0.5 4,888,267 - +0.6 4,888,267 - -0.2 4,888,311 + +0.1 4,888,312 - -2.0 4,888,445 + +0.4 4,888,446 - +2.3 4,888,453 + +0.6 4,888,453 + +0.9 4,888,454 - -1.0 4,888,472 + PFLU_RS21695 0.11 +0.6 4,888,472 + PFLU_RS21695 0.11 -0.0 4,888,472 + PFLU_RS21695 0.11 +0.4 4,888,473 - PFLU_RS21695 0.11 +2.0 4,888,473 - PFLU_RS21695 0.11 +1.0 4,888,511 + PFLU_RS21695 0.14 +0.8 4,888,511 + PFLU_RS21695 0.14 +0.5 4,888,511 + PFLU_RS21695 0.14 +0.6 4,888,511 + PFLU_RS21695 0.14 +0.3 4,888,512 - PFLU_RS21695 0.14 +1.1 4,888,512 - PFLU_RS21695 0.14 -0.8 4,888,512 - PFLU_RS21695 0.14 +1.8 4,888,646 + PFLU_RS21695 0.26 +0.1 4,888,647 - PFLU_RS21695 0.26 +0.5 4,888,647 - PFLU_RS21695 0.26 +1.1 4,888,664 + PFLU_RS21695 0.28 +1.0 4,888,664 + PFLU_RS21695 0.28 +1.8 4,888,664 + PFLU_RS21695 0.28 +0.7 4,889,079 + PFLU_RS21695 0.64 +1.9 4,889,080 - PFLU_RS21695 0.64 +0.6 4,889,080 - PFLU_RS21695 0.64 -0.4 4,889,240 + PFLU_RS21695 0.78 +1.4 4,889,241 - PFLU_RS21695 0.79 +0.5 4,889,241 - PFLU_RS21695 0.79 +0.5 4,889,336 + PFLU_RS21695 0.87 +0.3 4,889,336 + PFLU_RS21695 0.87 +0.0 4,889,336 + PFLU_RS21695 0.87 +1.0 4,889,336 + PFLU_RS21695 0.87 +0.4 4,889,336 + PFLU_RS21695 0.87 -0.0 4,889,336 + PFLU_RS21695 0.87 +0.9 4,889,337 - PFLU_RS21695 0.87 +0.8 4,889,337 - PFLU_RS21695 0.87 +0.6 4,889,337 - PFLU_RS21695 0.87 +0.8 4,889,512 + +2.0 4,889,512 + +1.0 4,889,512 + +0.5 4,889,512 + +2.3 4,889,512 + -0.2 4,889,512 + +0.2 4,889,512 + -0.1 4,889,512 + +1.5 4,889,512 + -0.0 4,889,512 + -1.1 4,889,513 - +0.1 4,889,513 - -0.0 4,889,513 - +0.2 4,889,513 - -0.0 4,889,547 - +0.9 4,889,547 - -2.1 4,889,547 - +1.2 4,889,547 - -0.5 4,889,547 - +0.8 4,889,656 + PFLU_RS21700 0.21 -0.7 4,889,670 + PFLU_RS21700 0.23 -0.8 4,889,670 + PFLU_RS21700 0.23 +0.6 4,889,691 + PFLU_RS21700 0.26 -0.1 4,889,692 - PFLU_RS21700 0.26 +0.3 4,890,114 + PFLU_RS21700 0.80 +2.0 4,890,114 + PFLU_RS21700 0.80 +1.5 4,890,114 + PFLU_RS21700 0.80 +0.1 4,890,114 + PFLU_RS21700 0.80 +0.5 4,890,115 - PFLU_RS21700 0.80 +1.3 4,890,115 - PFLU_RS21700 0.80 +0.0 4,890,115 - PFLU_RS21700 0.80 +0.2 4,890,118 - PFLU_RS21700 0.80 -0.6 4,890,118 - PFLU_RS21700 0.80 +1.2 4,890,131 + PFLU_RS21700 0.82 +1.3 4,890,131 + PFLU_RS21700 0.82 +3.2 4,890,132 - PFLU_RS21700 0.82 +0.2 4,890,298 + +0.9 4,890,299 - +0.6 4,890,306 + PFLU_RS21705 0.10 +1.5 4,890,306 + PFLU_RS21705 0.10 +0.9 4,890,306 + PFLU_RS21705 0.10 +1.3 4,890,307 - PFLU_RS21705 0.11 +0.8 4,890,307 - PFLU_RS21705 0.11 -0.2 4,890,307 - PFLU_RS21705 0.11 +0.3 4,890,307 - PFLU_RS21705 0.11 +1.2 4,890,321 + PFLU_RS21705 0.16 +1.5 4,890,321 + PFLU_RS21705 0.16 +0.8 4,890,321 + PFLU_RS21705 0.16 -1.3 4,890,321 + PFLU_RS21705 0.16 +0.8 4,890,321 + PFLU_RS21705 0.16 -0.1 4,890,321 + PFLU_RS21705 0.16 +0.6 4,890,321 + PFLU_RS21705 0.16 +0.6 4,890,321 + PFLU_RS21705 0.16 +0.6 4,890,321 + PFLU_RS21705 0.16 -0.0 4,890,321 + PFLU_RS21705 0.16 +0.3 4,890,322 - PFLU_RS21705 0.16 +0.5 4,890,322 - PFLU_RS21705 0.16 +0.4 4,890,322 - PFLU_RS21705 0.16 -0.4 4,890,322 - PFLU_RS21705 0.16 +0.5 4,890,322 - PFLU_RS21705 0.16 +1.4 4,890,322 - PFLU_RS21705 0.16 -1.1 4,890,322 - PFLU_RS21705 0.16 +0.8 4,890,322 - PFLU_RS21705 0.16 +1.8 4,890,322 - PFLU_RS21705 0.16 +0.7
Or see this region's nucleotide sequence