Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS20690

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS20685 and PFLU_RS20690 are separated by 3 nucleotidesPFLU_RS20690 and PFLU_RS20695 are separated by 14 nucleotides PFLU_RS20685: PFLU_RS20685 - MFS transporter, at 4,658,633 to 4,659,832 _RS20685 PFLU_RS20690: PFLU_RS20690 - hypothetical protein, at 4,659,836 to 4,660,141 _RS20690 PFLU_RS20695: PFLU_RS20695 - M4 family metallopeptidase, at 4,660,156 to 4,661,217 _RS20695 Position (kb) 4659 4660 4661Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4658.914 kb on + strand, within PFLU_RS20685at 4658.939 kb on + strand, within PFLU_RS20685at 4658.939 kb on + strand, within PFLU_RS20685at 4658.939 kb on + strand, within PFLU_RS20685at 4658.939 kb on + strand, within PFLU_RS20685at 4658.940 kb on - strand, within PFLU_RS20685at 4658.940 kb on - strand, within PFLU_RS20685at 4658.940 kb on - strand, within PFLU_RS20685at 4658.940 kb on - strand, within PFLU_RS20685at 4658.940 kb on - strand, within PFLU_RS20685at 4658.940 kb on - strand, within PFLU_RS20685at 4658.970 kb on - strand, within PFLU_RS20685at 4659.053 kb on + strand, within PFLU_RS20685at 4659.053 kb on + strand, within PFLU_RS20685at 4659.053 kb on + strand, within PFLU_RS20685at 4659.053 kb on + strand, within PFLU_RS20685at 4659.053 kb on + strand, within PFLU_RS20685at 4659.053 kb on + strand, within PFLU_RS20685at 4659.053 kb on + strand, within PFLU_RS20685at 4659.053 kb on + strand, within PFLU_RS20685at 4659.053 kb on + strand, within PFLU_RS20685at 4659.053 kb on + strand, within PFLU_RS20685at 4659.054 kb on - strand, within PFLU_RS20685at 4659.054 kb on - strand, within PFLU_RS20685at 4659.054 kb on - strand, within PFLU_RS20685at 4659.054 kb on - strand, within PFLU_RS20685at 4659.075 kb on - strand, within PFLU_RS20685at 4659.075 kb on - strand, within PFLU_RS20685at 4659.173 kb on + strand, within PFLU_RS20685at 4659.173 kb on + strand, within PFLU_RS20685at 4659.174 kb on - strand, within PFLU_RS20685at 4659.252 kb on + strand, within PFLU_RS20685at 4659.252 kb on + strand, within PFLU_RS20685at 4659.253 kb on - strand, within PFLU_RS20685at 4659.283 kb on + strand, within PFLU_RS20685at 4659.283 kb on + strand, within PFLU_RS20685at 4659.284 kb on - strand, within PFLU_RS20685at 4659.284 kb on - strand, within PFLU_RS20685at 4659.332 kb on + strand, within PFLU_RS20685at 4659.332 kb on + strand, within PFLU_RS20685at 4659.332 kb on + strand, within PFLU_RS20685at 4659.332 kb on + strand, within PFLU_RS20685at 4659.332 kb on + strand, within PFLU_RS20685at 4659.332 kb on + strand, within PFLU_RS20685at 4659.332 kb on + strand, within PFLU_RS20685at 4659.333 kb on - strand, within PFLU_RS20685at 4659.434 kb on + strand, within PFLU_RS20685at 4659.434 kb on + strand, within PFLU_RS20685at 4659.435 kb on - strand, within PFLU_RS20685at 4659.435 kb on - strand, within PFLU_RS20685at 4659.435 kb on - strand, within PFLU_RS20685at 4659.435 kb on - strand, within PFLU_RS20685at 4659.435 kb on - strand, within PFLU_RS20685at 4659.435 kb on - strand, within PFLU_RS20685at 4659.605 kb on + strand, within PFLU_RS20685at 4659.605 kb on + strand, within PFLU_RS20685at 4659.605 kb on + strand, within PFLU_RS20685at 4659.605 kb on + strand, within PFLU_RS20685at 4659.605 kb on + strand, within PFLU_RS20685at 4659.605 kb on + strand, within PFLU_RS20685at 4659.605 kb on + strand, within PFLU_RS20685at 4659.605 kb on + strand, within PFLU_RS20685at 4659.605 kb on + strand, within PFLU_RS20685at 4659.605 kb on + strand, within PFLU_RS20685at 4659.605 kb on + strand, within PFLU_RS20685at 4659.606 kb on - strand, within PFLU_RS20685at 4659.606 kb on - strand, within PFLU_RS20685at 4659.606 kb on - strand, within PFLU_RS20685at 4659.606 kb on - strand, within PFLU_RS20685at 4659.606 kb on - strand, within PFLU_RS20685at 4659.606 kb on - strand, within PFLU_RS20685at 4659.606 kb on - strand, within PFLU_RS20685at 4659.606 kb on - strand, within PFLU_RS20685at 4659.606 kb on - strand, within PFLU_RS20685at 4659.606 kb on - strand, within PFLU_RS20685at 4659.606 kb on - strand, within PFLU_RS20685at 4659.650 kb on + strand, within PFLU_RS20685at 4659.650 kb on + strand, within PFLU_RS20685at 4659.650 kb on + strand, within PFLU_RS20685at 4659.650 kb on + strand, within PFLU_RS20685at 4659.650 kb on + strand, within PFLU_RS20685at 4659.650 kb on + strand, within PFLU_RS20685at 4659.650 kb on + strand, within PFLU_RS20685at 4659.650 kb on + strand, within PFLU_RS20685at 4659.650 kb on + strand, within PFLU_RS20685at 4659.650 kb on + strand, within PFLU_RS20685at 4659.650 kb on + strand, within PFLU_RS20685at 4659.650 kb on + strand, within PFLU_RS20685at 4659.651 kb on - strand, within PFLU_RS20685at 4659.651 kb on - strand, within PFLU_RS20685at 4659.651 kb on - strand, within PFLU_RS20685at 4659.651 kb on - strand, within PFLU_RS20685at 4659.651 kb on - strand, within PFLU_RS20685at 4659.651 kb on - strand, within PFLU_RS20685at 4659.651 kb on - strand, within PFLU_RS20685at 4659.651 kb on - strand, within PFLU_RS20685at 4659.651 kb on - strand, within PFLU_RS20685at 4659.653 kb on + strand, within PFLU_RS20685at 4659.654 kb on - strand, within PFLU_RS20685at 4659.746 kb on + strandat 4659.746 kb on + strandat 4659.747 kb on - strandat 4659.747 kb on - strandat 4659.747 kb on - strandat 4659.848 kb on - strandat 4659.951 kb on + strand, within PFLU_RS20690at 4659.951 kb on + strand, within PFLU_RS20690at 4659.951 kb on + strand, within PFLU_RS20690at 4659.952 kb on - strand, within PFLU_RS20690at 4659.952 kb on - strand, within PFLU_RS20690at 4659.952 kb on - strand, within PFLU_RS20690at 4660.078 kb on + strand, within PFLU_RS20690at 4660.079 kb on - strand, within PFLU_RS20690at 4660.079 kb on - strand, within PFLU_RS20690at 4660.224 kb on - strandat 4660.224 kb on - strandat 4660.224 kb on - strandat 4660.244 kb on + strandat 4660.244 kb on + strandat 4660.244 kb on + strandat 4660.244 kb on + strandat 4660.244 kb on + strandat 4660.244 kb on + strandat 4660.244 kb on + strandat 4660.245 kb on - strandat 4660.245 kb on - strandat 4660.245 kb on - strandat 4660.245 kb on - strandat 4660.245 kb on - strandat 4660.245 kb on - strandat 4660.245 kb on - strandat 4660.245 kb on - strandat 4660.245 kb on - strandat 4660.245 kb on - strandat 4660.248 kb on + strandat 4660.249 kb on - strandat 4660.249 kb on - strandat 4660.310 kb on + strand, within PFLU_RS20695at 4660.310 kb on + strand, within PFLU_RS20695at 4660.367 kb on + strand, within PFLU_RS20695at 4660.368 kb on - strand, within PFLU_RS20695at 4660.398 kb on + strand, within PFLU_RS20695at 4660.398 kb on + strand, within PFLU_RS20695at 4660.399 kb on - strand, within PFLU_RS20695at 4660.421 kb on + strand, within PFLU_RS20695at 4660.421 kb on + strand, within PFLU_RS20695at 4660.421 kb on + strand, within PFLU_RS20695at 4660.422 kb on - strand, within PFLU_RS20695at 4660.596 kb on - strand, within PFLU_RS20695at 4660.661 kb on + strand, within PFLU_RS20695at 4660.661 kb on + strand, within PFLU_RS20695at 4660.661 kb on + strand, within PFLU_RS20695at 4660.661 kb on + strand, within PFLU_RS20695at 4660.661 kb on + strand, within PFLU_RS20695at 4660.661 kb on + strand, within PFLU_RS20695at 4660.661 kb on + strand, within PFLU_RS20695at 4660.661 kb on + strand, within PFLU_RS20695at 4660.662 kb on - strand, within PFLU_RS20695at 4660.662 kb on - strand, within PFLU_RS20695at 4660.662 kb on - strand, within PFLU_RS20695at 4660.802 kb on + strand, within PFLU_RS20695at 4660.802 kb on + strand, within PFLU_RS20695at 4660.802 kb on + strand, within PFLU_RS20695at 4660.802 kb on + strand, within PFLU_RS20695at 4660.802 kb on + strand, within PFLU_RS20695at 4660.803 kb on - strand, within PFLU_RS20695at 4660.803 kb on - strand, within PFLU_RS20695at 4660.803 kb on - strand, within PFLU_RS20695at 4660.860 kb on + strand, within PFLU_RS20695at 4660.860 kb on + strand, within PFLU_RS20695at 4660.861 kb on - strand, within PFLU_RS20695at 4660.910 kb on + strand, within PFLU_RS20695at 4660.910 kb on + strand, within PFLU_RS20695at 4660.911 kb on - strand, within PFLU_RS20695at 4660.911 kb on - strand, within PFLU_RS20695at 4660.911 kb on - strand, within PFLU_RS20695at 4660.911 kb on - strand, within PFLU_RS20695at 4660.911 kb on - strand, within PFLU_RS20695at 4661.000 kb on + strand, within PFLU_RS20695at 4661.001 kb on - strand, within PFLU_RS20695

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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4,658,914 + PFLU_RS20685 0.23 +0.4
4,658,939 + PFLU_RS20685 0.26 +0.7
4,658,939 + PFLU_RS20685 0.26 +1.0
4,658,939 + PFLU_RS20685 0.26 +0.6
4,658,939 + PFLU_RS20685 0.26 +1.0
4,658,940 - PFLU_RS20685 0.26 -0.4
4,658,940 - PFLU_RS20685 0.26 +0.8
4,658,940 - PFLU_RS20685 0.26 -1.5
4,658,940 - PFLU_RS20685 0.26 +1.8
4,658,940 - PFLU_RS20685 0.26 -0.5
4,658,940 - PFLU_RS20685 0.26 -0.1
4,658,970 - PFLU_RS20685 0.28 +0.9
4,659,053 + PFLU_RS20685 0.35 -1.0
4,659,053 + PFLU_RS20685 0.35 -1.7
4,659,053 + PFLU_RS20685 0.35 +1.2
4,659,053 + PFLU_RS20685 0.35 +1.1
4,659,053 + PFLU_RS20685 0.35 +0.5
4,659,053 + PFLU_RS20685 0.35 -0.3
4,659,053 + PFLU_RS20685 0.35 +0.8
4,659,053 + PFLU_RS20685 0.35 -1.2
4,659,053 + PFLU_RS20685 0.35 +0.8
4,659,053 + PFLU_RS20685 0.35 -0.9
4,659,054 - PFLU_RS20685 0.35 -1.2
4,659,054 - PFLU_RS20685 0.35 +1.2
4,659,054 - PFLU_RS20685 0.35 -0.4
4,659,054 - PFLU_RS20685 0.35 -0.3
4,659,075 - PFLU_RS20685 0.37 +0.4
4,659,075 - PFLU_RS20685 0.37 +0.5
4,659,173 + PFLU_RS20685 0.45 -1.5
4,659,173 + PFLU_RS20685 0.45 -0.5
4,659,174 - PFLU_RS20685 0.45 +0.4
4,659,252 + PFLU_RS20685 0.52 +1.6
4,659,252 + PFLU_RS20685 0.52 -0.1
4,659,253 - PFLU_RS20685 0.52 +0.1
4,659,283 + PFLU_RS20685 0.54 -2.4
4,659,283 + PFLU_RS20685 0.54 -1.5
4,659,284 - PFLU_RS20685 0.54 -0.7
4,659,284 - PFLU_RS20685 0.54 -0.6
4,659,332 + PFLU_RS20685 0.58 +1.8
4,659,332 + PFLU_RS20685 0.58 -0.9
4,659,332 + PFLU_RS20685 0.58 +0.4
4,659,332 + PFLU_RS20685 0.58 -0.9
4,659,332 + PFLU_RS20685 0.58 -0.4
4,659,332 + PFLU_RS20685 0.58 +0.4
4,659,332 + PFLU_RS20685 0.58 +0.9
4,659,333 - PFLU_RS20685 0.58 -1.5
4,659,434 + PFLU_RS20685 0.67 +0.5
4,659,434 + PFLU_RS20685 0.67 -0.8
4,659,435 - PFLU_RS20685 0.67 -0.7
4,659,435 - PFLU_RS20685 0.67 -2.1
4,659,435 - PFLU_RS20685 0.67 +2.5
4,659,435 - PFLU_RS20685 0.67 -0.8
4,659,435 - PFLU_RS20685 0.67 +0.5
4,659,435 - PFLU_RS20685 0.67 -0.1
4,659,605 + PFLU_RS20685 0.81 -0.7
4,659,605 + PFLU_RS20685 0.81 -0.2
4,659,605 + PFLU_RS20685 0.81 +1.1
4,659,605 + PFLU_RS20685 0.81 +0.6
4,659,605 + PFLU_RS20685 0.81 -0.2
4,659,605 + PFLU_RS20685 0.81 +0.4
4,659,605 + PFLU_RS20685 0.81 -0.7
4,659,605 + PFLU_RS20685 0.81 -0.1
4,659,605 + PFLU_RS20685 0.81 -0.1
4,659,605 + PFLU_RS20685 0.81 +0.4
4,659,605 + PFLU_RS20685 0.81 +0.2
4,659,606 - PFLU_RS20685 0.81 -0.6
4,659,606 - PFLU_RS20685 0.81 +0.4
4,659,606 - PFLU_RS20685 0.81 +0.2
4,659,606 - PFLU_RS20685 0.81 +0.6
4,659,606 - PFLU_RS20685 0.81 +0.9
4,659,606 - PFLU_RS20685 0.81 -0.2
4,659,606 - PFLU_RS20685 0.81 -1.5
4,659,606 - PFLU_RS20685 0.81 +0.2
4,659,606 - PFLU_RS20685 0.81 +0.4
4,659,606 - PFLU_RS20685 0.81 +0.6
4,659,606 - PFLU_RS20685 0.81 +0.8
4,659,650 + PFLU_RS20685 0.85 +1.1
4,659,650 + PFLU_RS20685 0.85 +1.2
4,659,650 + PFLU_RS20685 0.85 +0.6
4,659,650 + PFLU_RS20685 0.85 +0.2
4,659,650 + PFLU_RS20685 0.85 -0.1
4,659,650 + PFLU_RS20685 0.85 -0.4
4,659,650 + PFLU_RS20685 0.85 -1.4
4,659,650 + PFLU_RS20685 0.85 -1.7
4,659,650 + PFLU_RS20685 0.85 -0.2
4,659,650 + PFLU_RS20685 0.85 +0.8
4,659,650 + PFLU_RS20685 0.85 +0.2
4,659,650 + PFLU_RS20685 0.85 +1.2
4,659,651 - PFLU_RS20685 0.85 +1.6
4,659,651 - PFLU_RS20685 0.85 +0.8
4,659,651 - PFLU_RS20685 0.85 +0.8
4,659,651 - PFLU_RS20685 0.85 -0.0
4,659,651 - PFLU_RS20685 0.85 -1.3
4,659,651 - PFLU_RS20685 0.85 +0.4
4,659,651 - PFLU_RS20685 0.85 +1.6
4,659,651 - PFLU_RS20685 0.85 +0.1
4,659,651 - PFLU_RS20685 0.85 -0.1
4,659,653 + PFLU_RS20685 0.85 +1.3
4,659,654 - PFLU_RS20685 0.85 +0.4
4,659,746 + -2.1
4,659,746 + -0.1
4,659,747 - -0.1
4,659,747 - +0.7
4,659,747 - +0.8
4,659,848 - -0.6
4,659,951 + PFLU_RS20690 0.38 -2.0
4,659,951 + PFLU_RS20690 0.38 -2.2
4,659,951 + PFLU_RS20690 0.38 -0.8
4,659,952 - PFLU_RS20690 0.38 -2.7
4,659,952 - PFLU_RS20690 0.38 -3.6
4,659,952 - PFLU_RS20690 0.38 -3.5
4,660,078 + PFLU_RS20690 0.79 -1.8
4,660,079 - PFLU_RS20690 0.79 -3.4
4,660,079 - PFLU_RS20690 0.79 -0.7
4,660,224 - +1.6
4,660,224 - -0.1
4,660,224 - -2.1
4,660,244 + +1.0
4,660,244 + -0.4
4,660,244 + +0.6
4,660,244 + -0.2
4,660,244 + +0.6
4,660,244 + -1.1
4,660,244 + +0.5
4,660,245 - -1.1
4,660,245 - +0.1
4,660,245 - +0.5
4,660,245 - -2.5
4,660,245 - +0.6
4,660,245 - +0.1
4,660,245 - +0.5
4,660,245 - +0.3
4,660,245 - +0.3
4,660,245 - -1.5
4,660,248 + -2.1
4,660,249 - +0.8
4,660,249 - +1.5
4,660,310 + PFLU_RS20695 0.15 -1.3
4,660,310 + PFLU_RS20695 0.15 +0.5
4,660,367 + PFLU_RS20695 0.20 +1.4
4,660,368 - PFLU_RS20695 0.20 +0.6
4,660,398 + PFLU_RS20695 0.23 +0.1
4,660,398 + PFLU_RS20695 0.23 -0.5
4,660,399 - PFLU_RS20695 0.23 -0.2
4,660,421 + PFLU_RS20695 0.25 +1.1
4,660,421 + PFLU_RS20695 0.25 +1.2
4,660,421 + PFLU_RS20695 0.25 +1.9
4,660,422 - PFLU_RS20695 0.25 +1.1
4,660,596 - PFLU_RS20695 0.41 +0.3
4,660,661 + PFLU_RS20695 0.48 +0.3
4,660,661 + PFLU_RS20695 0.48 +0.5
4,660,661 + PFLU_RS20695 0.48 +1.2
4,660,661 + PFLU_RS20695 0.48 +1.1
4,660,661 + PFLU_RS20695 0.48 +0.6
4,660,661 + PFLU_RS20695 0.48 +1.1
4,660,661 + PFLU_RS20695 0.48 +0.6
4,660,661 + PFLU_RS20695 0.48 +0.4
4,660,662 - PFLU_RS20695 0.48 +0.3
4,660,662 - PFLU_RS20695 0.48 -0.7
4,660,662 - PFLU_RS20695 0.48 +0.8
4,660,802 + PFLU_RS20695 0.61 +0.4
4,660,802 + PFLU_RS20695 0.61 +0.4
4,660,802 + PFLU_RS20695 0.61 +1.6
4,660,802 + PFLU_RS20695 0.61 +1.5
4,660,802 + PFLU_RS20695 0.61 -0.0
4,660,803 - PFLU_RS20695 0.61 +0.3
4,660,803 - PFLU_RS20695 0.61 -0.6
4,660,803 - PFLU_RS20695 0.61 -0.5
4,660,860 + PFLU_RS20695 0.66 +0.2
4,660,860 + PFLU_RS20695 0.66 +0.9
4,660,861 - PFLU_RS20695 0.66 +0.1
4,660,910 + PFLU_RS20695 0.71 -0.9
4,660,910 + PFLU_RS20695 0.71 +0.2
4,660,911 - PFLU_RS20695 0.71 +1.0
4,660,911 - PFLU_RS20695 0.71 +0.2
4,660,911 - PFLU_RS20695 0.71 +0.9
4,660,911 - PFLU_RS20695 0.71 +0.4
4,660,911 - PFLU_RS20695 0.71 -0.2
4,661,000 + PFLU_RS20695 0.79 +1.4
4,661,001 - PFLU_RS20695 0.80 -0.2

Or see this region's nucleotide sequence