Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS13885

Experiment: succinate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	succinate (C)
3,126,487	-		PFLU_RS13875	0.78	+1.8
3,126,569	-		PFLU_RS13875	0.85	-1.0
3,126,569	-		PFLU_RS13875	0.85	-0.0
3,126,569	-		PFLU_RS13875	0.85	-1.3
3,126,601	-		PFLU_RS13875	0.88	-0.6
3,126,601	-		PFLU_RS13875	0.88	-2.3
3,126,726	+				-0.0
3,126,727	-				+1.1
3,126,745	+				+0.7
3,126,745	+				+1.9
3,126,768	-				+0.5
3,126,785	+				+1.3
3,126,785	+				+0.2
3,126,786	-				-1.8
3,126,786	-				-0.0
3,126,786	-				+0.4
3,126,862	+				+0.2
3,126,862	+				+0.8
3,126,862	+				+2.0
3,126,862	+				-0.3
3,126,862	+				+1.2
3,126,862	+				-0.4
3,126,862	+				-0.6
3,126,862	+				-1.9
3,126,862	+				-0.7
3,126,862	+				-2.7
3,126,862	+				-1.2
3,126,862	+				-1.1
3,126,862	+				+0.8
3,126,862	+				-0.2
3,126,862	+				+1.0
3,126,862	+				-0.2
3,126,862	+				-1.0
3,126,863	-				+0.3
3,126,863	-				+0.1
3,126,863	-				+0.9
3,126,863	-				-0.6
3,126,863	-				+1.5
3,126,863	-				+0.7
3,126,863	-				+0.3
3,126,863	-				-0.6
3,126,863	-				+0.3
3,126,863	-				-1.9
3,126,863	-				-0.5
3,126,863	-				+0.4
3,126,863	-				-0.2
3,126,863	-				-0.9
3,126,863	-				+0.6
3,126,863	-				+0.3
3,126,864	+				-1.3
3,126,864	+				-2.0
3,126,864	+				+1.0
3,126,864	+				+0.6
3,126,864	+				+1.7
3,126,864	+				-0.1
3,126,864	+				-1.3
3,126,864	+				+0.4
3,126,864	+				-0.2
3,126,864	+				+0.4
3,126,864	+				+1.0
3,126,864	+				-1.0
3,126,864	+				-1.2
3,126,864	+				+0.7
3,126,864	+				+0.3
3,126,864	+				+0.4
3,126,864	+				-0.2
3,126,864	+				-0.2
3,126,865	-				-0.4
3,126,865	-				-0.4
3,126,865	-				+1.4
3,126,865	-				-1.8
3,126,865	-				-0.3
3,126,865	-				-0.3
3,126,865	-				-1.4
3,126,865	-				+0.2
3,126,865	-				-0.1
3,126,865	-				+0.3
3,126,865	-				-0.1
3,126,865	-				-0.0
3,126,865	-				+1.4
3,126,865	-				-1.6
3,126,865	-				-0.3
3,126,865	-				-0.2
3,126,865	-				-0.8
3,126,865	-				+1.1
3,126,865	-				+0.2
3,126,865	-				+1.3
3,126,965	+		PFLU_RS30785	0.54	-0.6
3,126,965	+		PFLU_RS30785	0.54	+0.0
3,126,966	-		PFLU_RS30785	0.55	+2.0
3,126,966	-		PFLU_RS30785	0.55	-0.1
3,126,966	-		PFLU_RS30785	0.55	+0.7
3,126,966	-		PFLU_RS30785	0.55	-1.6
3,126,966	-		PFLU_RS30785	0.55	-1.0
3,127,021	-		PFLU_RS30785	0.80	-1.7
3,127,027	+		PFLU_RS30785	0.83	-0.2
3,127,027	+		PFLU_RS30785	0.83	-1.6
3,127,028	-		PFLU_RS30785	0.83	+1.4
3,127,028	-		PFLU_RS30785	0.83	+2.3
3,127,028	-		PFLU_RS30785	0.83	-1.1
3,127,103	+				+0.3
3,127,136	-		PFLU_RS13880	0.16	-1.0
3,127,136	-		PFLU_RS13880	0.16	-0.3
3,127,136	-		PFLU_RS13880	0.16	+0.4
3,127,136	-		PFLU_RS13880	0.16	+0.7
3,127,136	-		PFLU_RS13880	0.16	+0.2
3,127,145	-		PFLU_RS13880	0.19	+0.7
3,127,145	-		PFLU_RS13880	0.19	-0.0
3,127,157	+		PFLU_RS13880	0.23	+1.7
3,127,158	-		PFLU_RS13880	0.23	-0.2
3,127,163	+		PFLU_RS13880	0.25	-1.3
3,127,164	-		PFLU_RS13880	0.25	+0.1
3,127,192	+		PFLU_RS13880	0.34	+0.6
3,127,192	+		PFLU_RS13880	0.34	-0.3
3,127,192	+		PFLU_RS13880	0.34	-0.0
3,127,193	-		PFLU_RS13880	0.34	+2.4
3,127,193	-		PFLU_RS13880	0.34	-0.0
3,127,193	-		PFLU_RS13880	0.34	+0.4
3,127,193	-		PFLU_RS13880	0.34	+0.2
3,127,193	-		PFLU_RS13880	0.34	-0.7
3,127,196	+		PFLU_RS13880	0.35	+0.4
3,127,196	+		PFLU_RS13880	0.35	+0.4
3,127,197	-		PFLU_RS13880	0.36	-1.6
3,127,197	-		PFLU_RS13880	0.36	-1.1
3,127,197	-		PFLU_RS13880	0.36	+0.2
3,127,224	+		PFLU_RS13880	0.44	-1.3
3,127,224	+		PFLU_RS13880	0.44	-0.8
3,127,225	-		PFLU_RS13880	0.45	+2.2
3,127,225	-		PFLU_RS13880	0.45	+3.2
3,127,225	-		PFLU_RS13880	0.45	+0.2
3,127,258	+		PFLU_RS13880	0.55	+3.3
3,127,258	+		PFLU_RS13880	0.55	-0.6
3,127,260	+		PFLU_RS13880	0.56	-0.6
3,127,260	+		PFLU_RS13880	0.56	-0.0
3,127,260	+		PFLU_RS13880	0.56	-1.0
3,127,260	+		PFLU_RS13880	0.56	+0.3
3,127,260	+		PFLU_RS13880	0.56	-0.2
3,127,260	+		PFLU_RS13880	0.56	-2.3
3,127,260	+		PFLU_RS13880	0.56	+2.5
3,127,261	-		PFLU_RS13880	0.56	-0.6
3,127,261	-		PFLU_RS13880	0.56	-0.4
3,127,261	-		PFLU_RS13880	0.56	+1.2
3,127,261	-		PFLU_RS13880	0.56	+0.3
3,127,261	-		PFLU_RS13880	0.56	-0.0
3,127,261	-		PFLU_RS13880	0.56	-0.2
3,127,261	-		PFLU_RS13880	0.56	+0.7
3,127,289	-		PFLU_RS13880	0.65	-0.5
3,127,353	+		PFLU_RS13880	0.86	+1.0
3,127,354	-		PFLU_RS13880	0.86	-0.3
3,127,354	-		PFLU_RS13880	0.86	-1.0
3,127,384	+				+0.5
3,127,413	+				-2.2
3,127,414	-				+0.1
3,127,448	+				-1.9
3,127,448	+				-1.2
3,127,448	+				+0.5
3,127,448	+				+0.7
3,127,448	+				+1.0
3,127,449	-				-1.3
3,127,449	-				-0.0
3,127,449	-				-1.6
3,127,471	+				-1.2
3,127,546	+		PFLU_RS13885	0.33	-0.0
3,127,546	+		PFLU_RS13885	0.33	-0.3
3,127,546	+		PFLU_RS13885	0.33	-0.2
3,127,697	+				-0.2
3,127,697	+				+2.3
3,127,697	+				-0.8
3,127,697	+				-0.2
3,127,697	+				-1.8
3,127,697	+				-0.2
3,127,698	-				+0.3
3,127,698	-				+0.5
3,127,698	-				-0.7
3,127,698	-				-0.9
3,127,698	-				+0.6
3,127,698	-				+0.1
3,127,698	-				+0.3
3,127,698	-				+0.7
3,127,698	-				-1.2
3,127,698	-				-0.2
3,127,698	-				+0.2
3,128,446	-				+0.7
3,128,478	-				+0.7
3,128,478	-				+0.3
3,128,478	-				-0.1
3,128,520	-		PFLU_RS13895	0.23	+0.6
3,128,628	-		PFLU_RS13895	0.71	-1.0
3,128,628	-		PFLU_RS13895	0.71	+1.1