Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS12670

Experiment: succinate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	succinate (C)
2,859,213	-		PFLU_RS12665	0.30	-0.8
2,859,265	+		PFLU_RS12665	0.35	-0.4
2,859,265	+		PFLU_RS12665	0.35	-0.8
2,859,265	+		PFLU_RS12665	0.35	+0.9
2,859,266	-		PFLU_RS12665	0.35	-1.2
2,859,343	+		PFLU_RS12665	0.43	+0.8
2,859,343	+		PFLU_RS12665	0.43	-0.5
2,859,343	+		PFLU_RS12665	0.43	-1.7
2,859,344	-		PFLU_RS12665	0.43	-0.6
2,859,344	-		PFLU_RS12665	0.43	-0.9
2,859,344	-		PFLU_RS12665	0.43	+0.2
2,859,344	-		PFLU_RS12665	0.43	+0.1
2,859,344	-		PFLU_RS12665	0.43	-0.3
2,859,466	+		PFLU_RS12665	0.55	-2.4
2,859,466	+		PFLU_RS12665	0.55	-0.9
2,859,466	+		PFLU_RS12665	0.55	-0.5
2,859,466	+		PFLU_RS12665	0.55	+0.7
2,859,466	+		PFLU_RS12665	0.55	-0.3
2,859,466	+		PFLU_RS12665	0.55	+0.1
2,859,466	+		PFLU_RS12665	0.55	+1.0
2,859,466	+		PFLU_RS12665	0.55	+0.1
2,859,466	+		PFLU_RS12665	0.55	+0.2
2,859,467	-		PFLU_RS12665	0.55	-0.1
2,859,467	-		PFLU_RS12665	0.55	-0.2
2,859,467	-		PFLU_RS12665	0.55	+0.3
2,859,467	-		PFLU_RS12665	0.55	+0.0
2,859,467	-		PFLU_RS12665	0.55	+0.3
2,859,467	-		PFLU_RS12665	0.55	+0.4
2,859,467	-		PFLU_RS12665	0.55	+1.1
2,859,467	-		PFLU_RS12665	0.55	-0.6
2,859,467	-		PFLU_RS12665	0.55	-0.4
2,859,467	-		PFLU_RS12665	0.55	-1.7
2,859,550	+		PFLU_RS12665	0.63	+2.1
2,859,550	+		PFLU_RS12665	0.63	+0.1
2,859,551	-		PFLU_RS12665	0.64	+0.9
2,859,551	-		PFLU_RS12665	0.64	-0.3
2,859,553	+		PFLU_RS12665	0.64	-0.3
2,859,554	-		PFLU_RS12665	0.64	-1.3
2,859,583	+		PFLU_RS12665	0.67	-0.3
2,859,583	+		PFLU_RS12665	0.67	+0.3
2,859,583	+		PFLU_RS12665	0.67	-1.7
2,859,583	+		PFLU_RS12665	0.67	+1.1
2,859,584	-		PFLU_RS12665	0.67	+1.1
2,859,584	-		PFLU_RS12665	0.67	-1.1
2,859,584	-		PFLU_RS12665	0.67	+0.5
2,859,584	-		PFLU_RS12665	0.67	-0.1
2,859,584	-		PFLU_RS12665	0.67	+1.0
2,859,584	-		PFLU_RS12665	0.67	+1.3
2,859,651	+		PFLU_RS12665	0.73	-0.9
2,859,783	+		PFLU_RS12665	0.86	+1.1
2,859,919	+				+1.9
2,859,919	+				+0.4
2,859,970	-				+1.1
2,860,060	+				+0.9
2,860,061	-				+0.5
2,860,061	-				+0.3
2,860,108	+				-1.2
2,860,108	+				+0.5
2,860,108	+				+1.0
2,860,108	+				+0.1
2,860,108	+				+0.3
2,860,109	-				-0.3
2,860,109	-				+0.1
2,860,109	-				-1.3
2,860,141	+				+0.4
2,860,141	+				+0.7
2,860,141	+				+1.0
2,860,141	+				+3.4
2,860,142	-				-1.1
2,860,142	-				+0.2
2,860,142	-				+0.3
2,860,142	-				-0.0
2,860,142	-				+0.7
2,860,142	-				-0.9
2,860,142	-				+0.9
2,860,142	-				-1.6
2,860,142	-				+1.1
2,860,142	-				+0.6
2,860,199	+				+0.7
2,860,199	+				-0.1
2,860,199	+				+0.4
2,860,199	+				+0.7
2,860,199	+				-1.4
2,860,200	-				+0.3
2,860,200	-				+1.5
2,860,200	-				+1.1
2,860,200	-				+0.1
2,860,200	-				+0.1
2,860,200	-				-1.4
2,860,202	-				-2.9
2,860,228	+				-0.2
2,860,228	+				-0.7
2,860,229	-				+0.9
2,860,229	-				+0.5
2,860,279	+		PFLU_RS12670	0.10	+1.1
2,860,279	+		PFLU_RS12670	0.10	+1.4
2,860,321	+		PFLU_RS12670	0.12	+0.4
2,860,321	+		PFLU_RS12670	0.12	+0.1
2,860,423	+		PFLU_RS12670	0.17	-1.6
2,860,423	+		PFLU_RS12670	0.17	-1.1
2,860,585	+		PFLU_RS12670	0.25	+1.1
2,860,622	-		PFLU_RS12670	0.26	+0.5
2,860,631	+		PFLU_RS12670	0.27	+1.0
2,860,632	-		PFLU_RS12670	0.27	+0.8
2,860,632	-		PFLU_RS12670	0.27	-0.3
2,860,711	+		PFLU_RS12670	0.31	+0.0
2,860,711	+		PFLU_RS12670	0.31	+0.0
2,860,712	-		PFLU_RS12670	0.31	+0.5
2,860,720	+		PFLU_RS12670	0.31	+0.7
2,860,720	+		PFLU_RS12670	0.31	+0.6
2,860,720	+		PFLU_RS12670	0.31	+0.6
2,860,720	+		PFLU_RS12670	0.31	+0.2
2,860,720	+		PFLU_RS12670	0.31	-0.3
2,860,720	+		PFLU_RS12670	0.31	+0.2
2,860,720	+		PFLU_RS12670	0.31	-0.8
2,860,720	+		PFLU_RS12670	0.31	-0.2
2,860,720	+		PFLU_RS12670	0.31	-0.4
2,860,720	+		PFLU_RS12670	0.31	-0.4
2,860,721	-		PFLU_RS12670	0.31	+0.3
2,860,721	-		PFLU_RS12670	0.31	+0.2
2,860,721	-		PFLU_RS12670	0.31	-0.6
2,860,721	-		PFLU_RS12670	0.31	+0.4
2,860,721	-		PFLU_RS12670	0.31	-1.9
2,860,721	-		PFLU_RS12670	0.31	-0.3
2,860,721	-		PFLU_RS12670	0.31	-0.4
2,860,721	-		PFLU_RS12670	0.31	+0.7
2,860,747	+		PFLU_RS12670	0.32	-1.2
2,860,748	-		PFLU_RS12670	0.32	-1.9
2,860,748	-		PFLU_RS12670	0.32	-0.0
2,860,884	-		PFLU_RS12670	0.39	-0.1
2,860,909	-		PFLU_RS12670	0.40	+0.6
2,860,914	+		PFLU_RS12670	0.40	-0.3
2,860,915	-		PFLU_RS12670	0.40	+1.4
2,860,981	+		PFLU_RS12670	0.43	+0.3
2,860,981	+		PFLU_RS12670	0.43	-0.6
2,860,981	+		PFLU_RS12670	0.43	+0.1
2,860,982	-		PFLU_RS12670	0.43	-0.6
2,860,982	-		PFLU_RS12670	0.43	-1.6
2,860,982	-		PFLU_RS12670	0.43	+1.7
2,860,982	-		PFLU_RS12670	0.43	+0.8
2,860,982	-		PFLU_RS12670	0.43	+0.2
2,860,982	-		PFLU_RS12670	0.43	+0.0
2,861,013	+		PFLU_RS12670	0.45	-1.4
2,861,052	-		PFLU_RS12670	0.47	+0.6
2,861,069	-		PFLU_RS12670	0.47	+0.2
2,861,170	+		PFLU_RS12670	0.52	+0.6
2,861,209	+		PFLU_RS12670	0.54	-0.2
2,861,209	+		PFLU_RS12670	0.54	+0.7
2,861,209	+		PFLU_RS12670	0.54	+0.6
2,861,209	+		PFLU_RS12670	0.54	-1.2
2,861,209	+		PFLU_RS12670	0.54	+1.3
2,861,210	-		PFLU_RS12670	0.54	+0.2
2,861,210	-		PFLU_RS12670	0.54	-0.2
2,861,216	-		PFLU_RS12670	0.54	+0.1
2,861,258	-		PFLU_RS12670	0.56	+2.0
2,861,356	+		PFLU_RS12670	0.61	-0.6
2,861,356	+		PFLU_RS12670	0.61	+0.9
2,861,357	-		PFLU_RS12670	0.61	+0.4
2,861,357	-		PFLU_RS12670	0.61	+0.7
2,861,357	-		PFLU_RS12670	0.61	-0.9
2,861,357	-		PFLU_RS12670	0.61	+1.8
2,861,357	-		PFLU_RS12670	0.61	+0.1
2,861,428	+		PFLU_RS12670	0.64	-1.3
2,861,548	+		PFLU_RS12670	0.70	+1.0
2,861,549	-		PFLU_RS12670	0.70	-1.7
2,861,549	-		PFLU_RS12670	0.70	+0.1
2,861,549	-		PFLU_RS12670	0.70	+0.1
2,861,549	-		PFLU_RS12670	0.70	-1.2
2,861,572	-		PFLU_RS12670	0.71	+2.1
2,861,572	-		PFLU_RS12670	0.71	+0.9
2,861,656	+		PFLU_RS12670	0.75	+0.4
2,861,666	-		PFLU_RS12670	0.76	-1.3
2,861,719	+		PFLU_RS12670	0.78	+0.1
2,861,719	+		PFLU_RS12670	0.78	-0.4
2,861,720	-		PFLU_RS12670	0.78	-2.0
2,861,720	-		PFLU_RS12670	0.78	-0.0
2,861,720	-		PFLU_RS12670	0.78	+0.1
2,861,720	-		PFLU_RS12670	0.78	+1.6
2,861,720	-		PFLU_RS12670	0.78	+1.3
2,861,720	-		PFLU_RS12670	0.78	+0.6
2,861,720	-		PFLU_RS12670	0.78	-2.6
2,861,720	-		PFLU_RS12670	0.78	-1.2
2,861,794	+		PFLU_RS12670	0.82	+0.6
2,861,794	+		PFLU_RS12670	0.82	+1.3
2,861,794	+		PFLU_RS12670	0.82	-1.6
2,861,794	+		PFLU_RS12670	0.82	+1.2
2,861,794	+		PFLU_RS12670	0.82	+1.0
2,861,795	-		PFLU_RS12670	0.82	-0.6
2,861,795	-		PFLU_RS12670	0.82	+0.2
2,861,795	-		PFLU_RS12670	0.82	+0.4
2,861,795	-		PFLU_RS12670	0.82	-0.4
2,861,795	-		PFLU_RS12670	0.82	+1.1
2,861,874	-		PFLU_RS12670	0.85	+0.1
2,861,939	+		PFLU_RS12670	0.88	+0.6
2,861,940	-		PFLU_RS12670	0.88	-1.0
2,862,174	+				-0.2
2,862,174	+				-0.4
2,862,175	-				-0.4
2,862,175	-				+1.1
2,862,175	-				-0.7
2,862,175	-				+1.7
2,862,233	+				+0.1
2,862,233	+				+0.2
2,862,234	-				-0.2
2,862,234	-				-0.1
2,862,472	+		PFLU_RS12675	0.49	-0.8
2,862,473	-		PFLU_RS12675	0.49	+0.5
2,862,473	-		PFLU_RS12675	0.49	-0.6
2,862,533	-		PFLU_RS12675	0.65	+1.3
2,862,683	+				+2.3
2,862,683	+				-1.4
2,862,684	-				-0.9
2,862,730	-				+0.3
2,862,995	+		PFLU_RS12680	0.53	+1.1
2,862,995	+		PFLU_RS12680	0.53	+2.3
2,862,995	+		PFLU_RS12680	0.53	-0.7
2,862,995	+		PFLU_RS12680	0.53	+0.6
2,862,995	+		PFLU_RS12680	0.53	-1.7
2,862,996	-		PFLU_RS12680	0.53	-2.0
2,862,996	-		PFLU_RS12680	0.53	+0.6
2,862,996	-		PFLU_RS12680	0.53	+0.6
2,862,996	-		PFLU_RS12680	0.53	-1.4
2,863,135	+		PFLU_RS12680	0.85	-0.4
2,863,136	-		PFLU_RS12680	0.85	+1.0