Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS06375

Experiment: succinate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPFLU_RS06370 and PFLU_RS06375 are separated by 157 nucleotidesPFLU_RS06375 and PFLU_RS06380 are separated by 180 nucleotidesPFLU_RS06380 and PFLU_RS06385 overlap by 4 nucleotides PFLU_RS06370: PFLU_RS06370 - 3-deoxy-8-phosphooctulonate synthase, at 1,428,860 to 1,429,705 _RS06370 PFLU_RS06375: PFLU_RS06375 - phosphopyruvate hydratase, at 1,429,863 to 1,431,152 _RS06375 PFLU_RS06380: PFLU_RS06380 - cell division protein FtsB, at 1,431,333 to 1,431,611 _RS06380 PFLU_RS06385: PFLU_RS06385 - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, at 1,431,608 to 1,432,315 _RS06385 Position (kb) 1429 1430 1431 1432Strain fitness (log2 ratio) -2 -1 0 1 2at 1429.726 kb on + strandat 1429.727 kb on - strandat 1429.736 kb on + strandat 1429.737 kb on - strandat 1429.737 kb on - strandat 1430.951 kb on + strand, within PFLU_RS06375at 1431.123 kb on + strandat 1431.123 kb on + strandat 1431.123 kb on + strandat 1431.123 kb on + strandat 1431.123 kb on + strandat 1431.124 kb on - strandat 1431.124 kb on - strandat 1431.124 kb on - strandat 1431.124 kb on - strandat 1431.157 kb on + strandat 1431.157 kb on + strandat 1431.158 kb on - strandat 1431.158 kb on - strandat 1431.158 kb on - strandat 1431.158 kb on - strandat 1431.158 kb on - strandat 1431.158 kb on - strandat 1431.165 kb on - strandat 1431.173 kb on + strandat 1431.173 kb on + strandat 1431.173 kb on + strandat 1431.215 kb on + strandat 1431.215 kb on + strandat 1431.215 kb on + strandat 1431.274 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
remove
1,429,726 + -0.6
1,429,727 - -0.8
1,429,736 + +1.4
1,429,737 - -0.8
1,429,737 - -0.6
1,430,951 + PFLU_RS06375 0.84 +0.2
1,431,123 + +0.1
1,431,123 + +0.3
1,431,123 + +0.0
1,431,123 + +0.6
1,431,123 + -0.7
1,431,124 - -2.3
1,431,124 - -2.0
1,431,124 - -0.7
1,431,124 - -0.8
1,431,157 + -0.7
1,431,157 + +0.8
1,431,158 - +0.2
1,431,158 - -1.1
1,431,158 - -0.9
1,431,158 - -1.0
1,431,158 - -0.5
1,431,158 - +1.3
1,431,165 - -2.7
1,431,173 + +1.4
1,431,173 + -1.2
1,431,173 + +0.7
1,431,215 + +0.6
1,431,215 + +0.7
1,431,215 + +0.2
1,431,274 + +2.5

Or see this region's nucleotide sequence