Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS05805

Experiment: succinate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	succinate (C)
1,305,968	+				-1.8
1,305,969	-				+0.1
1,305,990	+				-1.0
1,305,991	-				+0.8
1,305,991	-				-0.6
1,305,991	-				+0.0
1,305,991	-				+1.3
1,306,117	+		PFLU_RS05795	0.23	-0.5
1,306,117	+		PFLU_RS05795	0.23	+0.1
1,306,117	+		PFLU_RS05795	0.23	-1.2
1,306,118	-		PFLU_RS05795	0.24	+0.0
1,306,118	-		PFLU_RS05795	0.24	-0.3
1,306,118	-		PFLU_RS05795	0.24	-0.2
1,306,118	-		PFLU_RS05795	0.24	+0.1
1,306,239	-		PFLU_RS05795	0.43	-0.3
1,306,239	-		PFLU_RS05795	0.43	+0.8
1,306,239	-		PFLU_RS05795	0.43	-0.1
1,306,364	+		PFLU_RS05795	0.64	+0.2
1,306,365	-		PFLU_RS05795	0.64	+0.3
1,306,472	-		PFLU_RS05795	0.81	+0.1
1,306,709	+		PFLU_RS05800	0.34	-0.3
1,306,796	+		PFLU_RS05800	0.60	+0.8
1,306,797	-		PFLU_RS05800	0.61	-0.7
1,307,029	+		PFLU_RS05805	0.11	-1.1
1,307,030	-		PFLU_RS05805	0.11	-2.1
1,307,030	-		PFLU_RS05805	0.11	+2.2
1,307,152	+		PFLU_RS05805	0.23	+2.0
1,307,152	+		PFLU_RS05805	0.23	-0.1
1,307,152	+		PFLU_RS05805	0.23	+0.4
1,307,152	+		PFLU_RS05805	0.23	+0.1
1,307,152	+		PFLU_RS05805	0.23	+0.1
1,307,152	+		PFLU_RS05805	0.23	+0.7
1,307,152	+		PFLU_RS05805	0.23	+1.5
1,307,153	-		PFLU_RS05805	0.23	+0.6
1,307,153	-		PFLU_RS05805	0.23	-2.5
1,307,153	-		PFLU_RS05805	0.23	+0.4
1,307,153	-		PFLU_RS05805	0.23	-0.9
1,307,153	-		PFLU_RS05805	0.23	+0.0
1,307,153	-		PFLU_RS05805	0.23	-0.1
1,307,153	-		PFLU_RS05805	0.23	-1.4
1,307,153	-		PFLU_RS05805	0.23	-0.6
1,307,153	-		PFLU_RS05805	0.23	+0.6
1,307,153	-		PFLU_RS05805	0.23	-0.3
1,307,153	-		PFLU_RS05805	0.23	-0.3
1,307,323	+		PFLU_RS05805	0.40	+0.1
1,307,323	+		PFLU_RS05805	0.40	-0.3
1,307,323	+		PFLU_RS05805	0.40	-0.1
1,307,323	+		PFLU_RS05805	0.40	-1.4
1,307,323	+		PFLU_RS05805	0.40	-0.1
1,307,323	+		PFLU_RS05805	0.40	-0.5
1,307,324	-		PFLU_RS05805	0.40	-0.7
1,307,324	-		PFLU_RS05805	0.40	-0.8
1,307,324	-		PFLU_RS05805	0.40	+0.4
1,307,324	-		PFLU_RS05805	0.40	+0.7
1,307,365	+		PFLU_RS05805	0.44	+0.0
1,307,446	+		PFLU_RS05805	0.52	-0.7
1,307,446	+		PFLU_RS05805	0.52	+0.2
1,307,446	+		PFLU_RS05805	0.52	-0.1
1,307,446	+		PFLU_RS05805	0.52	+0.9
1,307,446	+		PFLU_RS05805	0.52	+1.5
1,307,446	+		PFLU_RS05805	0.52	-1.4
1,307,446	+		PFLU_RS05805	0.52	-3.3
1,307,446	+		PFLU_RS05805	0.52	+1.1
1,307,446	+		PFLU_RS05805	0.52	-0.1
1,307,446	+		PFLU_RS05805	0.52	-2.7
1,307,446	+		PFLU_RS05805	0.52	+0.2
1,307,447	-		PFLU_RS05805	0.53	-0.7
1,307,447	-		PFLU_RS05805	0.53	-2.2
1,307,447	-		PFLU_RS05805	0.53	+1.0
1,307,447	-		PFLU_RS05805	0.53	+0.7
1,307,447	-		PFLU_RS05805	0.53	+0.3
1,307,447	-		PFLU_RS05805	0.53	-0.3
1,307,447	-		PFLU_RS05805	0.53	+0.9
1,307,447	-		PFLU_RS05805	0.53	+1.3
1,307,447	-		PFLU_RS05805	0.53	+0.9
1,307,447	-		PFLU_RS05805	0.53	+0.1
1,307,448	+		PFLU_RS05805	0.53	+0.0
1,307,448	+		PFLU_RS05805	0.53	-2.1
1,307,448	+		PFLU_RS05805	0.53	-0.6
1,307,448	+		PFLU_RS05805	0.53	-0.1
1,307,449	-		PFLU_RS05805	0.53	+0.7
1,307,449	-		PFLU_RS05805	0.53	-0.9
1,307,449	-		PFLU_RS05805	0.53	-0.0
1,307,449	-		PFLU_RS05805	0.53	-1.7
1,307,609	+		PFLU_RS05805	0.69	-0.0
1,307,609	+		PFLU_RS05805	0.69	+0.6
1,307,609	+		PFLU_RS05805	0.69	-1.3
1,307,610	-		PFLU_RS05805	0.69	-0.9
1,307,610	-		PFLU_RS05805	0.69	-0.1
1,307,610	-		PFLU_RS05805	0.69	-1.0
1,307,659	+		PFLU_RS05805	0.74	-0.2
1,307,659	+		PFLU_RS05805	0.74	-0.1
1,307,660	-		PFLU_RS05805	0.74	-0.6
1,307,743	+		PFLU_RS05805	0.82	-0.0
1,307,743	+		PFLU_RS05805	0.82	-0.7
1,307,744	-		PFLU_RS05805	0.82	+0.8
1,307,744	-		PFLU_RS05805	0.82	+1.0
1,307,797	+		PFLU_RS05805	0.88	+0.4
1,307,798	-		PFLU_RS05805	0.88	+0.9
1,307,798	-		PFLU_RS05805	0.88	+0.2
1,307,911	-				-0.4
1,307,915	+				-0.5
1,307,915	+				-0.3
1,307,915	+				+0.8
1,307,916	-				+1.0
1,307,916	-				-1.2
1,307,916	-				-1.0
1,307,916	-				-1.3
1,307,991	+		PFLU_RS05810	0.12	-2.5
1,308,067	-		PFLU_RS05810	0.24	+1.2
1,308,067	-		PFLU_RS05810	0.24	-0.7
1,308,235	-		PFLU_RS05810	0.51	-0.0
1,308,297	+		PFLU_RS05810	0.60	+1.2
1,308,297	+		PFLU_RS05810	0.60	+1.6
1,308,444	+		PFLU_RS05810	0.84	+0.0
1,308,444	+		PFLU_RS05810	0.84	-0.5
1,308,445	-		PFLU_RS05810	0.84	+0.3
1,308,445	-		PFLU_RS05810	0.84	+0.7
1,308,488	+				-0.0
1,308,488	+				-0.5
1,308,504	+				-1.1
1,308,505	-				-0.1
1,308,505	-				-0.3
1,308,543	+				+0.8
1,308,543	+				-0.5
1,308,543	+				+0.3
1,308,543	+				-0.0
1,308,544	-				+0.4
1,308,544	-				-0.3
1,308,544	-				+0.0
1,308,555	+				-1.2
1,308,555	+				+1.9
1,308,555	+				-2.3
1,308,556	-				+0.4
1,308,558	+				-2.0
1,308,558	+				+2.4
1,308,558	+				+0.7
1,308,558	+				-3.2
1,308,558	+				+0.1
1,308,558	+				+0.9
1,308,558	+				+1.0
1,308,558	+				-2.5
1,308,558	+				-0.5
1,308,558	+				-0.4
1,308,559	-				+1.1
1,308,559	-				+0.2
1,308,559	-				-0.1
1,308,559	-				+0.0
1,308,666	+				-1.4
1,308,666	+				-1.2
1,308,666	+				+0.4
1,308,666	+				-0.7
1,308,666	+				-2.3
1,308,666	+				+1.2
1,308,666	+				+0.9
1,308,666	+				+1.1
1,308,666	+				+0.7
1,308,666	+				+0.3
1,308,666	+				-1.0
1,308,667	-				+0.2
1,308,667	-				-0.4
1,308,667	-				+0.4
1,308,667	-				+1.6
1,308,667	-				-0.4
1,308,667	-				-0.2
1,308,667	-				-0.1
1,308,667	-				+0.1
1,308,731	-				-0.7
1,308,731	-				+1.2
1,308,801	+		PFLU_RS30425	0.13	+1.0
1,308,801	+		PFLU_RS30425	0.13	+0.4
1,308,801	+		PFLU_RS30425	0.13	-0.8
1,308,801	+		PFLU_RS30425	0.13	+1.2
1,308,801	+		PFLU_RS30425	0.13	+0.1
1,308,801	+		PFLU_RS30425	0.13	+0.2
1,308,801	+		PFLU_RS30425	0.13	+0.3
1,308,801	+		PFLU_RS30425	0.13	+0.9
1,308,801	+		PFLU_RS30425	0.13	-0.5
1,308,802	-		PFLU_RS30425	0.13	-0.2
1,308,802	-		PFLU_RS30425	0.13	-0.7
1,308,802	-		PFLU_RS30425	0.13	-1.7
1,308,802	-		PFLU_RS30425	0.13	-0.3
1,308,802	-		PFLU_RS30425	0.13	+0.3
1,308,802	-		PFLU_RS30425	0.13	+0.5
1,308,844	-		PFLU_RS30425	0.15	-1.6
1,308,855	-		PFLU_RS30425	0.16	+0.3
1,308,855	-		PFLU_RS30425	0.16	+0.3
1,308,855	-		PFLU_RS30425	0.16	+1.6
1,308,870	+		PFLU_RS30425	0.16	-0.1
1,308,870	+		PFLU_RS30425	0.16	+1.7
1,308,870	+		PFLU_RS30425	0.16	+0.2
1,308,870	+		PFLU_RS30425	0.16	-0.6
1,308,870	+		PFLU_RS30425	0.16	+0.5
1,308,870	+		PFLU_RS30425	0.16	-0.6
1,308,871	-		PFLU_RS30425	0.16	-0.4
1,308,871	-		PFLU_RS30425	0.16	-0.1
1,308,871	-		PFLU_RS30425	0.16	-1.3
1,308,871	-		PFLU_RS30425	0.16	-1.0
1,308,871	-		PFLU_RS30425	0.16	+0.4
1,308,912	+		PFLU_RS30425	0.19	-0.2
1,308,912	+		PFLU_RS30425	0.19	-0.2
1,308,912	+		PFLU_RS30425	0.19	+0.2
1,308,912	+		PFLU_RS30425	0.19	+1.8
1,308,913	-		PFLU_RS30425	0.19	+1.3
1,308,913	-		PFLU_RS30425	0.19	-0.9
1,308,915	-		PFLU_RS30425	0.19	+0.1