Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS03240 and PFLU_RS03245 are separated by 66 nucleotides PFLU_RS03245 and PFLU_RS03250 are separated by 147 nucleotides PFLU_RS03250 and PFLU_RS03255 are separated by 85 nucleotides PFLU_RS03255 and PFLU_RS03260 are separated by 8 nucleotides PFLU_RS03260 and PFLU_RS03265 are separated by 146 nucleotides
PFLU_RS03240: PFLU_RS03240 - copper-translocating P-type ATPase, at 748,572 to 750,773
_RS03240
PFLU_RS03245: PFLU_RS03245 - hypothetical protein, at 750,840 to 751,220
_RS03245
PFLU_RS03250: PFLU_RS03250 - heavy-metal-associated domain-containing protein, at 751,368 to 751,565
_RS03250
PFLU_RS03255: PFLU_RS03255 - multidrug effflux MFS transporter, at 751,651 to 752,844
_RS03255
PFLU_RS03260: PFLU_RS03260 - hypothetical protein, at 752,853 to 753,035
_RS03260
PFLU_RS03265: PFLU_RS03265 - zinc-binding alcohol dehydrogenase family protein, at 753,182 to 754,195
_RS03265
Position (kb) 751
752
753 Strain fitness (log2 ratio) -2
-1
0
1
2 at 750.802 kb on + strand at 750.803 kb on - strand at 750.841 kb on + strand at 750.841 kb on + strand at 750.842 kb on - strand at 750.842 kb on - strand at 750.842 kb on - strand at 750.844 kb on + strand at 750.845 kb on - strand at 750.868 kb on + strand at 750.868 kb on + strand at 750.868 kb on + strand at 750.868 kb on + strand at 750.868 kb on + strand at 750.868 kb on + strand at 750.868 kb on + strand at 750.869 kb on - strand at 750.869 kb on - strand at 750.869 kb on - strand at 750.869 kb on - strand at 750.869 kb on - strand at 750.869 kb on - strand at 750.869 kb on - strand at 750.869 kb on - strand at 750.869 kb on - strand at 750.869 kb on - strand at 750.869 kb on - strand at 750.869 kb on - strand at 750.869 kb on - strand at 750.869 kb on - strand at 750.869 kb on - strand at 750.869 kb on - strand at 750.869 kb on - strand at 751.005 kb on + strand, within PFLU_RS03245 at 751.005 kb on + strand, within PFLU_RS03245 at 751.005 kb on + strand, within PFLU_RS03245 at 751.006 kb on - strand, within PFLU_RS03245 at 751.006 kb on - strand, within PFLU_RS03245 at 751.006 kb on - strand, within PFLU_RS03245 at 751.006 kb on - strand, within PFLU_RS03245 at 751.078 kb on + strand, within PFLU_RS03245 at 751.078 kb on + strand, within PFLU_RS03245 at 751.078 kb on + strand, within PFLU_RS03245 at 751.078 kb on + strand, within PFLU_RS03245 at 751.078 kb on + strand, within PFLU_RS03245 at 751.078 kb on + strand, within PFLU_RS03245 at 751.078 kb on + strand, within PFLU_RS03245 at 751.078 kb on + strand, within PFLU_RS03245 at 751.078 kb on + strand, within PFLU_RS03245 at 751.078 kb on + strand, within PFLU_RS03245 at 751.078 kb on + strand, within PFLU_RS03245 at 751.078 kb on + strand, within PFLU_RS03245 at 751.078 kb on + strand, within PFLU_RS03245 at 751.079 kb on - strand, within PFLU_RS03245 at 751.079 kb on - strand, within PFLU_RS03245 at 751.079 kb on - strand, within PFLU_RS03245 at 751.079 kb on - strand, within PFLU_RS03245 at 751.079 kb on - strand, within PFLU_RS03245 at 751.079 kb on - strand, within PFLU_RS03245 at 751.079 kb on - strand, within PFLU_RS03245 at 751.079 kb on - strand, within PFLU_RS03245 at 751.079 kb on - strand, within PFLU_RS03245 at 751.079 kb on - strand, within PFLU_RS03245 at 751.079 kb on - strand, within PFLU_RS03245 at 751.079 kb on - strand, within PFLU_RS03245 at 751.079 kb on - strand, within PFLU_RS03245 at 751.141 kb on + strand, within PFLU_RS03245 at 751.141 kb on + strand, within PFLU_RS03245 at 751.141 kb on + strand, within PFLU_RS03245 at 751.141 kb on + strand, within PFLU_RS03245 at 751.141 kb on + strand, within PFLU_RS03245 at 751.142 kb on - strand, within PFLU_RS03245 at 751.142 kb on - strand, within PFLU_RS03245 at 751.142 kb on - strand, within PFLU_RS03245 at 751.282 kb on - strand at 751.296 kb on + strand at 751.296 kb on + strand at 751.296 kb on + strand at 751.296 kb on + strand at 751.297 kb on - strand at 751.297 kb on - strand at 751.315 kb on + strand at 751.315 kb on + strand at 751.316 kb on - strand at 751.375 kb on + strand at 751.375 kb on + strand at 751.375 kb on + strand at 751.376 kb on - strand at 751.376 kb on - strand at 751.376 kb on - strand at 751.376 kb on - strand at 751.376 kb on - strand at 751.545 kb on + strand, within PFLU_RS03250 at 751.546 kb on - strand at 751.546 kb on - strand at 751.559 kb on - strand at 751.559 kb on - strand at 751.559 kb on - strand at 751.559 kb on - strand at 751.577 kb on - strand at 751.580 kb on + strand at 751.589 kb on - strand at 751.589 kb on - strand at 751.621 kb on + strand at 751.664 kb on + strand at 751.665 kb on - strand at 751.665 kb on - strand at 751.665 kb on - strand at 751.792 kb on + strand, within PFLU_RS03255 at 751.792 kb on + strand, within PFLU_RS03255 at 751.792 kb on + strand, within PFLU_RS03255 at 751.793 kb on - strand, within PFLU_RS03255 at 751.793 kb on - strand, within PFLU_RS03255 at 751.793 kb on - strand, within PFLU_RS03255 at 751.825 kb on + strand, within PFLU_RS03255 at 751.825 kb on + strand, within PFLU_RS03255 at 751.825 kb on + strand, within PFLU_RS03255 at 751.825 kb on + strand, within PFLU_RS03255 at 751.825 kb on + strand, within PFLU_RS03255 at 751.825 kb on + strand, within PFLU_RS03255 at 751.826 kb on - strand, within PFLU_RS03255 at 751.826 kb on - strand, within PFLU_RS03255 at 751.826 kb on - strand, within PFLU_RS03255 at 751.826 kb on - strand, within PFLU_RS03255 at 751.826 kb on - strand, within PFLU_RS03255 at 751.826 kb on - strand, within PFLU_RS03255 at 751.826 kb on - strand, within PFLU_RS03255 at 751.887 kb on + strand, within PFLU_RS03255 at 751.887 kb on + strand, within PFLU_RS03255 at 751.887 kb on + strand, within PFLU_RS03255 at 751.887 kb on + strand, within PFLU_RS03255 at 751.887 kb on + strand, within PFLU_RS03255 at 751.888 kb on - strand, within PFLU_RS03255 at 751.888 kb on - strand, within PFLU_RS03255 at 752.038 kb on + strand, within PFLU_RS03255 at 752.038 kb on + strand, within PFLU_RS03255 at 752.039 kb on - strand, within PFLU_RS03255 at 752.039 kb on - strand, within PFLU_RS03255 at 752.147 kb on + strand, within PFLU_RS03255 at 752.245 kb on + strand, within PFLU_RS03255 at 752.272 kb on + strand, within PFLU_RS03255 at 752.281 kb on + strand, within PFLU_RS03255 at 752.281 kb on + strand, within PFLU_RS03255 at 752.282 kb on - strand, within PFLU_RS03255 at 752.298 kb on + strand, within PFLU_RS03255 at 752.299 kb on - strand, within PFLU_RS03255 at 752.299 kb on - strand, within PFLU_RS03255 at 752.299 kb on - strand, within PFLU_RS03255 at 752.323 kb on + strand, within PFLU_RS03255 at 752.323 kb on + strand, within PFLU_RS03255 at 752.323 kb on + strand, within PFLU_RS03255 at 752.323 kb on + strand, within PFLU_RS03255 at 752.323 kb on + strand, within PFLU_RS03255 at 752.324 kb on - strand, within PFLU_RS03255 at 752.324 kb on - strand, within PFLU_RS03255 at 752.381 kb on - strand, within PFLU_RS03255 at 752.418 kb on - strand, within PFLU_RS03255 at 752.418 kb on - strand, within PFLU_RS03255 at 752.486 kb on + strand, within PFLU_RS03255 at 752.494 kb on + strand, within PFLU_RS03255 at 752.494 kb on + strand, within PFLU_RS03255 at 752.494 kb on + strand, within PFLU_RS03255 at 752.494 kb on + strand, within PFLU_RS03255 at 752.574 kb on + strand, within PFLU_RS03255 at 752.574 kb on + strand, within PFLU_RS03255 at 752.575 kb on - strand, within PFLU_RS03255 at 752.575 kb on - strand, within PFLU_RS03255 at 752.575 kb on - strand, within PFLU_RS03255 at 752.581 kb on - strand, within PFLU_RS03255 at 752.993 kb on + strand, within PFLU_RS03260 at 752.993 kb on + strand, within PFLU_RS03260 at 752.994 kb on - strand, within PFLU_RS03260 at 752.994 kb on - strand, within PFLU_RS03260 at 752.994 kb on - strand, within PFLU_RS03260 at 752.994 kb on - strand, within PFLU_RS03260 at 753.012 kb on + strand, within PFLU_RS03260 at 753.022 kb on - strand at 753.022 kb on - strand at 753.052 kb on + strand at 753.052 kb on + strand at 753.079 kb on + strand at 753.080 kb on - strand at 753.080 kb on - strand at 753.080 kb on - strand at 753.080 kb on - strand at 753.080 kb on - strand at 753.080 kb on - strand at 753.081 kb on + strand at 753.081 kb on + strand at 753.081 kb on + strand at 753.081 kb on + strand at 753.081 kb on + strand at 753.081 kb on + strand at 753.081 kb on + strand at 753.082 kb on - strand at 753.082 kb on - strand at 753.082 kb on - strand at 753.082 kb on - strand at 753.082 kb on - strand at 753.082 kb on - strand at 753.082 kb on - strand at 753.091 kb on + strand at 753.091 kb on + strand at 753.092 kb on - strand at 753.092 kb on - strand at 753.092 kb on - strand at 753.103 kb on + strand at 753.104 kb on - strand at 753.104 kb on - strand at 753.128 kb on - strand at 753.128 kb on - strand at 753.155 kb on + strand at 753.155 kb on + strand at 753.384 kb on + strand, within PFLU_RS03265 at 753.384 kb on + strand, within PFLU_RS03265 at 753.384 kb on + strand, within PFLU_RS03265 at 753.384 kb on + strand, within PFLU_RS03265 at 753.384 kb on + strand, within PFLU_RS03265 at 753.384 kb on + strand, within PFLU_RS03265 at 753.385 kb on - strand, within PFLU_RS03265 at 753.385 kb on - strand, within PFLU_RS03265 at 753.385 kb on - strand, within PFLU_RS03265 at 753.385 kb on - strand, within PFLU_RS03265 at 753.385 kb on - strand, within PFLU_RS03265
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 750,802 + +0.9 750,803 - -0.2 750,841 + +0.4 750,841 + -0.4 750,842 - +0.9 750,842 - +0.1 750,842 - -0.5 750,844 + +1.0 750,845 - +1.5 750,868 + +0.9 750,868 + +1.9 750,868 + +0.6 750,868 + +2.1 750,868 + +0.1 750,868 + +0.3 750,868 + -0.3 750,869 - -1.6 750,869 - +1.0 750,869 - -0.3 750,869 - +0.6 750,869 - +1.0 750,869 - -0.6 750,869 - -0.9 750,869 - +0.0 750,869 - +0.6 750,869 - +0.3 750,869 - -0.4 750,869 - +0.6 750,869 - -0.8 750,869 - -0.2 750,869 - +0.4 750,869 - +2.2 750,869 - +1.5 751,005 + PFLU_RS03245 0.43 +0.3 751,005 + PFLU_RS03245 0.43 +0.6 751,005 + PFLU_RS03245 0.43 +1.3 751,006 - PFLU_RS03245 0.44 +0.9 751,006 - PFLU_RS03245 0.44 +0.1 751,006 - PFLU_RS03245 0.44 +1.8 751,006 - PFLU_RS03245 0.44 -1.2 751,078 + PFLU_RS03245 0.62 +1.1 751,078 + PFLU_RS03245 0.62 +0.7 751,078 + PFLU_RS03245 0.62 +1.2 751,078 + PFLU_RS03245 0.62 +0.4 751,078 + PFLU_RS03245 0.62 -0.6 751,078 + PFLU_RS03245 0.62 -2.6 751,078 + PFLU_RS03245 0.62 +0.4 751,078 + PFLU_RS03245 0.62 +0.2 751,078 + PFLU_RS03245 0.62 +0.6 751,078 + PFLU_RS03245 0.62 +2.0 751,078 + PFLU_RS03245 0.62 +0.6 751,078 + PFLU_RS03245 0.62 +1.6 751,078 + PFLU_RS03245 0.62 -1.5 751,079 - PFLU_RS03245 0.63 +0.6 751,079 - PFLU_RS03245 0.63 +1.9 751,079 - PFLU_RS03245 0.63 -0.3 751,079 - PFLU_RS03245 0.63 +0.8 751,079 - PFLU_RS03245 0.63 +1.4 751,079 - PFLU_RS03245 0.63 +1.1 751,079 - PFLU_RS03245 0.63 +0.4 751,079 - PFLU_RS03245 0.63 +1.1 751,079 - PFLU_RS03245 0.63 -0.8 751,079 - PFLU_RS03245 0.63 +1.2 751,079 - PFLU_RS03245 0.63 -0.1 751,079 - PFLU_RS03245 0.63 +0.7 751,079 - PFLU_RS03245 0.63 -1.4 751,141 + PFLU_RS03245 0.79 -0.0 751,141 + PFLU_RS03245 0.79 +0.2 751,141 + PFLU_RS03245 0.79 +1.8 751,141 + PFLU_RS03245 0.79 -1.0 751,141 + PFLU_RS03245 0.79 +1.7 751,142 - PFLU_RS03245 0.79 +1.0 751,142 - PFLU_RS03245 0.79 +1.3 751,142 - PFLU_RS03245 0.79 +0.4 751,282 - -0.9 751,296 + -1.9 751,296 + -1.7 751,296 + +0.9 751,296 + -0.3 751,297 - +1.0 751,297 - -0.4 751,315 + +0.9 751,315 + -0.8 751,316 - +0.2 751,375 + -0.0 751,375 + -0.5 751,375 + +0.3 751,376 - +0.2 751,376 - -0.9 751,376 - -0.4 751,376 - -0.2 751,376 - +0.2 751,545 + PFLU_RS03250 0.89 +0.3 751,546 - +0.9 751,546 - -0.2 751,559 - +0.0 751,559 - +0.9 751,559 - -0.8 751,559 - -1.5 751,577 - -0.1 751,580 + +0.9 751,589 - -0.7 751,589 - -0.0 751,621 + -1.1 751,664 + -2.3 751,665 - +1.3 751,665 - -0.1 751,665 - -0.0 751,792 + PFLU_RS03255 0.12 -0.2 751,792 + PFLU_RS03255 0.12 +1.1 751,792 + PFLU_RS03255 0.12 +1.4 751,793 - PFLU_RS03255 0.12 -1.7 751,793 - PFLU_RS03255 0.12 +0.7 751,793 - PFLU_RS03255 0.12 +1.3 751,825 + PFLU_RS03255 0.15 +0.3 751,825 + PFLU_RS03255 0.15 +0.6 751,825 + PFLU_RS03255 0.15 -0.1 751,825 + PFLU_RS03255 0.15 +0.4 751,825 + PFLU_RS03255 0.15 -0.5 751,825 + PFLU_RS03255 0.15 -0.2 751,826 - PFLU_RS03255 0.15 +0.0 751,826 - PFLU_RS03255 0.15 -0.8 751,826 - PFLU_RS03255 0.15 +1.4 751,826 - PFLU_RS03255 0.15 -0.1 751,826 - PFLU_RS03255 0.15 +1.5 751,826 - PFLU_RS03255 0.15 +0.9 751,826 - PFLU_RS03255 0.15 -0.2 751,887 + PFLU_RS03255 0.20 +0.4 751,887 + PFLU_RS03255 0.20 +0.3 751,887 + PFLU_RS03255 0.20 +0.0 751,887 + PFLU_RS03255 0.20 -0.0 751,887 + PFLU_RS03255 0.20 -1.5 751,888 - PFLU_RS03255 0.20 -1.4 751,888 - PFLU_RS03255 0.20 +0.6 752,038 + PFLU_RS03255 0.32 +1.2 752,038 + PFLU_RS03255 0.32 -0.5 752,039 - PFLU_RS03255 0.32 +0.9 752,039 - PFLU_RS03255 0.32 +0.3 752,147 + PFLU_RS03255 0.42 +0.1 752,245 + PFLU_RS03255 0.50 -0.3 752,272 + PFLU_RS03255 0.52 +0.2 752,281 + PFLU_RS03255 0.53 +0.3 752,281 + PFLU_RS03255 0.53 +0.3 752,282 - PFLU_RS03255 0.53 -0.1 752,298 + PFLU_RS03255 0.54 -0.1 752,299 - PFLU_RS03255 0.54 -0.3 752,299 - PFLU_RS03255 0.54 +1.2 752,299 - PFLU_RS03255 0.54 +1.0 752,323 + PFLU_RS03255 0.56 -0.1 752,323 + PFLU_RS03255 0.56 +0.7 752,323 + PFLU_RS03255 0.56 +0.4 752,323 + PFLU_RS03255 0.56 +0.4 752,323 + PFLU_RS03255 0.56 +0.8 752,324 - PFLU_RS03255 0.56 +0.6 752,324 - PFLU_RS03255 0.56 +0.3 752,381 - PFLU_RS03255 0.61 +0.2 752,418 - PFLU_RS03255 0.64 +0.3 752,418 - PFLU_RS03255 0.64 +0.9 752,486 + PFLU_RS03255 0.70 -0.6 752,494 + PFLU_RS03255 0.71 +0.6 752,494 + PFLU_RS03255 0.71 -0.8 752,494 + PFLU_RS03255 0.71 +0.9 752,494 + PFLU_RS03255 0.71 +0.5 752,574 + PFLU_RS03255 0.77 -0.8 752,574 + PFLU_RS03255 0.77 +0.9 752,575 - PFLU_RS03255 0.77 +0.3 752,575 - PFLU_RS03255 0.77 +1.1 752,575 - PFLU_RS03255 0.77 -0.1 752,581 - PFLU_RS03255 0.78 +0.1 752,993 + PFLU_RS03260 0.77 +0.5 752,993 + PFLU_RS03260 0.77 -0.3 752,994 - PFLU_RS03260 0.77 +0.8 752,994 - PFLU_RS03260 0.77 +0.9 752,994 - PFLU_RS03260 0.77 +0.4 752,994 - PFLU_RS03260 0.77 -0.5 753,012 + PFLU_RS03260 0.87 +0.1 753,022 - -0.5 753,022 - +0.9 753,052 + +0.3 753,052 + +0.8 753,079 + +1.7 753,080 - -2.2 753,080 - +0.8 753,080 - +1.1 753,080 - +0.6 753,080 - -0.7 753,080 - +0.8 753,081 + +1.0 753,081 + +0.6 753,081 + +0.4 753,081 + +1.7 753,081 + +0.5 753,081 + +0.3 753,081 + -0.6 753,082 - +1.0 753,082 - -0.5 753,082 - -0.1 753,082 - -0.0 753,082 - -0.4 753,082 - -1.0 753,082 - +0.8 753,091 + +0.8 753,091 + -0.0 753,092 - -0.2 753,092 - -0.4 753,092 - -1.9 753,103 + -0.2 753,104 - -0.5 753,104 - +1.2 753,128 - -0.3 753,128 - +0.4 753,155 + -0.4 753,155 + +1.5 753,384 + PFLU_RS03265 0.20 +1.0 753,384 + PFLU_RS03265 0.20 +0.5 753,384 + PFLU_RS03265 0.20 +1.2 753,384 + PFLU_RS03265 0.20 -0.0 753,384 + PFLU_RS03265 0.20 -0.2 753,384 + PFLU_RS03265 0.20 -1.6 753,385 - PFLU_RS03265 0.20 -0.3 753,385 - PFLU_RS03265 0.20 -1.1 753,385 - PFLU_RS03265 0.20 +0.7 753,385 - PFLU_RS03265 0.20 +2.7 753,385 - PFLU_RS03265 0.20 +0.2
Or see this region's nucleotide sequence