Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS03240

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS03230 and PFLU_RS03235 are separated by 145 nucleotidesPFLU_RS03235 and PFLU_RS03240 overlap by 4 nucleotidesPFLU_RS03240 and PFLU_RS03245 are separated by 66 nucleotidesPFLU_RS03245 and PFLU_RS03250 are separated by 147 nucleotidesPFLU_RS03250 and PFLU_RS03255 are separated by 85 nucleotides PFLU_RS03230: PFLU_RS03230 - serine protein kinase RIO, at 747,129 to 748,028 _RS03230 PFLU_RS03235: PFLU_RS03235 - Cu(I)-responsive transcriptional regulator, at 748,174 to 748,575 _RS03235 PFLU_RS03240: PFLU_RS03240 - copper-translocating P-type ATPase, at 748,572 to 750,773 _RS03240 PFLU_RS03245: PFLU_RS03245 - hypothetical protein, at 750,840 to 751,220 _RS03245 PFLU_RS03250: PFLU_RS03250 - heavy-metal-associated domain-containing protein, at 751,368 to 751,565 _RS03250 PFLU_RS03255: PFLU_RS03255 - multidrug effflux MFS transporter, at 751,651 to 752,844 _RS03255 Position (kb) 748 749 750 751Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 747.762 kb on + strand, within PFLU_RS03230at 747.763 kb on - strand, within PFLU_RS03230at 747.801 kb on + strand, within PFLU_RS03230at 747.802 kb on - strand, within PFLU_RS03230at 747.825 kb on + strand, within PFLU_RS03230at 747.826 kb on - strand, within PFLU_RS03230at 747.826 kb on - strand, within PFLU_RS03230at 747.826 kb on - strand, within PFLU_RS03230at 747.826 kb on - strand, within PFLU_RS03230at 747.826 kb on - strand, within PFLU_RS03230at 748.037 kb on + strandat 748.038 kb on - strandat 748.038 kb on - strandat 748.038 kb on - strandat 748.165 kb on + strandat 748.165 kb on + strandat 748.165 kb on + strandat 748.165 kb on + strandat 748.165 kb on + strandat 748.314 kb on + strand, within PFLU_RS03235at 748.315 kb on - strand, within PFLU_RS03235at 748.315 kb on - strand, within PFLU_RS03235at 748.315 kb on - strand, within PFLU_RS03235at 748.428 kb on + strand, within PFLU_RS03235at 748.428 kb on + strand, within PFLU_RS03235at 748.460 kb on + strand, within PFLU_RS03235at 748.517 kb on + strand, within PFLU_RS03235at 748.518 kb on - strand, within PFLU_RS03235at 748.518 kb on - strand, within PFLU_RS03235at 748.518 kb on - strand, within PFLU_RS03235at 748.598 kb on + strandat 748.598 kb on + strandat 748.620 kb on + strandat 748.620 kb on + strandat 748.620 kb on + strandat 748.621 kb on - strandat 748.621 kb on - strandat 748.621 kb on - strandat 748.721 kb on + strandat 748.722 kb on - strandat 748.723 kb on + strandat 748.723 kb on + strandat 748.723 kb on + strandat 748.723 kb on + strandat 748.723 kb on + strandat 748.724 kb on - strandat 748.724 kb on - strandat 748.762 kb on + strandat 748.762 kb on + strandat 748.763 kb on - strandat 748.763 kb on - strandat 749.442 kb on + strand, within PFLU_RS03240at 749.443 kb on - strand, within PFLU_RS03240at 749.443 kb on - strand, within PFLU_RS03240at 749.443 kb on - strand, within PFLU_RS03240at 749.483 kb on + strand, within PFLU_RS03240at 749.483 kb on + strand, within PFLU_RS03240at 749.484 kb on - strand, within PFLU_RS03240at 749.484 kb on - strand, within PFLU_RS03240at 749.704 kb on + strand, within PFLU_RS03240at 749.705 kb on - strand, within PFLU_RS03240at 749.774 kb on + strand, within PFLU_RS03240at 749.774 kb on + strand, within PFLU_RS03240at 749.875 kb on - strand, within PFLU_RS03240at 750.030 kb on + strand, within PFLU_RS03240at 750.036 kb on + strand, within PFLU_RS03240at 750.093 kb on + strand, within PFLU_RS03240at 750.094 kb on - strand, within PFLU_RS03240at 750.094 kb on - strand, within PFLU_RS03240at 750.175 kb on + strand, within PFLU_RS03240at 750.176 kb on - strand, within PFLU_RS03240at 750.176 kb on - strand, within PFLU_RS03240at 750.223 kb on + strand, within PFLU_RS03240at 750.224 kb on - strand, within PFLU_RS03240at 750.224 kb on - strand, within PFLU_RS03240at 750.265 kb on + strand, within PFLU_RS03240at 750.265 kb on + strand, within PFLU_RS03240at 750.265 kb on + strand, within PFLU_RS03240at 750.265 kb on + strand, within PFLU_RS03240at 750.265 kb on + strand, within PFLU_RS03240at 750.265 kb on + strand, within PFLU_RS03240at 750.265 kb on + strand, within PFLU_RS03240at 750.265 kb on + strand, within PFLU_RS03240at 750.266 kb on - strand, within PFLU_RS03240at 750.266 kb on - strand, within PFLU_RS03240at 750.266 kb on - strand, within PFLU_RS03240at 750.266 kb on - strand, within PFLU_RS03240at 750.266 kb on - strand, within PFLU_RS03240at 750.266 kb on - strand, within PFLU_RS03240at 750.269 kb on + strand, within PFLU_RS03240at 750.269 kb on + strand, within PFLU_RS03240at 750.269 kb on + strand, within PFLU_RS03240at 750.269 kb on + strand, within PFLU_RS03240at 750.269 kb on + strand, within PFLU_RS03240at 750.270 kb on - strand, within PFLU_RS03240at 750.270 kb on - strand, within PFLU_RS03240at 750.270 kb on - strand, within PFLU_RS03240at 750.270 kb on - strand, within PFLU_RS03240at 750.358 kb on + strand, within PFLU_RS03240at 750.358 kb on + strand, within PFLU_RS03240at 750.358 kb on + strand, within PFLU_RS03240at 750.358 kb on + strand, within PFLU_RS03240at 750.358 kb on + strand, within PFLU_RS03240at 750.358 kb on + strand, within PFLU_RS03240at 750.358 kb on + strand, within PFLU_RS03240at 750.358 kb on + strand, within PFLU_RS03240at 750.358 kb on + strand, within PFLU_RS03240at 750.358 kb on + strand, within PFLU_RS03240at 750.358 kb on + strand, within PFLU_RS03240at 750.358 kb on + strand, within PFLU_RS03240at 750.358 kb on + strand, within PFLU_RS03240at 750.358 kb on + strand, within PFLU_RS03240at 750.358 kb on + strand, within PFLU_RS03240at 750.359 kb on - strand, within PFLU_RS03240at 750.359 kb on - strand, within PFLU_RS03240at 750.359 kb on - strand, within PFLU_RS03240at 750.359 kb on - strand, within PFLU_RS03240at 750.359 kb on - strand, within PFLU_RS03240at 750.359 kb on - strand, within PFLU_RS03240at 750.359 kb on - strand, within PFLU_RS03240at 750.359 kb on - strand, within PFLU_RS03240at 750.359 kb on - strand, within PFLU_RS03240at 750.359 kb on - strand, within PFLU_RS03240at 750.359 kb on - strand, within PFLU_RS03240at 750.359 kb on - strand, within PFLU_RS03240at 750.359 kb on - strand, within PFLU_RS03240at 750.359 kb on - strand, within PFLU_RS03240at 750.574 kb on + strandat 750.574 kb on + strandat 750.574 kb on + strandat 750.802 kb on + strandat 750.803 kb on - strandat 750.841 kb on + strandat 750.841 kb on + strandat 750.842 kb on - strandat 750.842 kb on - strandat 750.842 kb on - strandat 750.844 kb on + strandat 750.845 kb on - strandat 750.868 kb on + strandat 750.868 kb on + strandat 750.868 kb on + strandat 750.868 kb on + strandat 750.868 kb on + strandat 750.868 kb on + strandat 750.868 kb on + strandat 750.869 kb on - strandat 750.869 kb on - strandat 750.869 kb on - strandat 750.869 kb on - strandat 750.869 kb on - strandat 750.869 kb on - strandat 750.869 kb on - strandat 750.869 kb on - strandat 750.869 kb on - strandat 750.869 kb on - strandat 750.869 kb on - strandat 750.869 kb on - strandat 750.869 kb on - strandat 750.869 kb on - strandat 750.869 kb on - strandat 750.869 kb on - strandat 750.869 kb on - strandat 751.005 kb on + strand, within PFLU_RS03245at 751.005 kb on + strand, within PFLU_RS03245at 751.005 kb on + strand, within PFLU_RS03245at 751.006 kb on - strand, within PFLU_RS03245at 751.006 kb on - strand, within PFLU_RS03245at 751.006 kb on - strand, within PFLU_RS03245at 751.006 kb on - strand, within PFLU_RS03245at 751.078 kb on + strand, within PFLU_RS03245at 751.078 kb on + strand, within PFLU_RS03245at 751.078 kb on + strand, within PFLU_RS03245at 751.078 kb on + strand, within PFLU_RS03245at 751.078 kb on + strand, within PFLU_RS03245at 751.078 kb on + strand, within PFLU_RS03245at 751.078 kb on + strand, within PFLU_RS03245at 751.078 kb on + strand, within PFLU_RS03245at 751.078 kb on + strand, within PFLU_RS03245at 751.078 kb on + strand, within PFLU_RS03245at 751.078 kb on + strand, within PFLU_RS03245at 751.078 kb on + strand, within PFLU_RS03245at 751.078 kb on + strand, within PFLU_RS03245at 751.079 kb on - strand, within PFLU_RS03245at 751.079 kb on - strand, within PFLU_RS03245at 751.079 kb on - strand, within PFLU_RS03245at 751.079 kb on - strand, within PFLU_RS03245at 751.079 kb on - strand, within PFLU_RS03245at 751.079 kb on - strand, within PFLU_RS03245at 751.079 kb on - strand, within PFLU_RS03245at 751.079 kb on - strand, within PFLU_RS03245at 751.079 kb on - strand, within PFLU_RS03245at 751.079 kb on - strand, within PFLU_RS03245at 751.079 kb on - strand, within PFLU_RS03245at 751.079 kb on - strand, within PFLU_RS03245at 751.079 kb on - strand, within PFLU_RS03245at 751.141 kb on + strand, within PFLU_RS03245at 751.141 kb on + strand, within PFLU_RS03245at 751.141 kb on + strand, within PFLU_RS03245at 751.141 kb on + strand, within PFLU_RS03245at 751.141 kb on + strand, within PFLU_RS03245at 751.142 kb on - strand, within PFLU_RS03245at 751.142 kb on - strand, within PFLU_RS03245at 751.142 kb on - strand, within PFLU_RS03245at 751.282 kb on - strandat 751.296 kb on + strandat 751.296 kb on + strandat 751.296 kb on + strandat 751.296 kb on + strandat 751.297 kb on - strandat 751.297 kb on - strandat 751.315 kb on + strandat 751.315 kb on + strandat 751.316 kb on - strandat 751.375 kb on + strandat 751.375 kb on + strandat 751.375 kb on + strandat 751.376 kb on - strandat 751.376 kb on - strandat 751.376 kb on - strandat 751.376 kb on - strandat 751.376 kb on - strandat 751.545 kb on + strand, within PFLU_RS03250at 751.546 kb on - strandat 751.546 kb on - strandat 751.559 kb on - strandat 751.559 kb on - strandat 751.559 kb on - strandat 751.559 kb on - strandat 751.577 kb on - strandat 751.580 kb on + strandat 751.589 kb on - strandat 751.589 kb on - strandat 751.621 kb on + strandat 751.664 kb on + strandat 751.665 kb on - strandat 751.665 kb on - strandat 751.665 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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747,762 + PFLU_RS03230 0.70 -0.0
747,763 - PFLU_RS03230 0.70 +1.5
747,801 + PFLU_RS03230 0.75 -1.0
747,802 - PFLU_RS03230 0.75 -0.8
747,825 + PFLU_RS03230 0.77 -1.6
747,826 - PFLU_RS03230 0.77 +0.2
747,826 - PFLU_RS03230 0.77 +0.1
747,826 - PFLU_RS03230 0.77 -0.5
747,826 - PFLU_RS03230 0.77 +2.9
747,826 - PFLU_RS03230 0.77 +0.4
748,037 + -0.1
748,038 - +0.8
748,038 - +0.7
748,038 - -0.3
748,165 + +0.3
748,165 + -2.2
748,165 + -0.2
748,165 + -1.4
748,165 + -0.1
748,314 + PFLU_RS03235 0.35 -1.3
748,315 - PFLU_RS03235 0.35 +0.8
748,315 - PFLU_RS03235 0.35 +0.1
748,315 - PFLU_RS03235 0.35 -1.1
748,428 + PFLU_RS03235 0.63 +0.6
748,428 + PFLU_RS03235 0.63 -1.1
748,460 + PFLU_RS03235 0.71 +1.6
748,517 + PFLU_RS03235 0.85 +0.2
748,518 - PFLU_RS03235 0.86 -0.9
748,518 - PFLU_RS03235 0.86 -0.6
748,518 - PFLU_RS03235 0.86 +0.9
748,598 + +0.8
748,598 + -0.5
748,620 + -0.7
748,620 + -0.9
748,620 + +1.2
748,621 - +0.1
748,621 - +0.1
748,621 - -0.0
748,721 + +0.6
748,722 - -1.6
748,723 + +0.6
748,723 + +1.1
748,723 + +0.3
748,723 + +1.0
748,723 + -0.1
748,724 - +0.5
748,724 - +0.7
748,762 + +1.3
748,762 + +0.9
748,763 - -0.4
748,763 - -0.9
749,442 + PFLU_RS03240 0.40 +0.4
749,443 - PFLU_RS03240 0.40 -2.9
749,443 - PFLU_RS03240 0.40 +0.1
749,443 - PFLU_RS03240 0.40 -1.8
749,483 + PFLU_RS03240 0.41 +0.3
749,483 + PFLU_RS03240 0.41 +0.1
749,484 - PFLU_RS03240 0.41 +0.2
749,484 - PFLU_RS03240 0.41 +1.7
749,704 + PFLU_RS03240 0.51 +0.5
749,705 - PFLU_RS03240 0.51 +0.1
749,774 + PFLU_RS03240 0.55 -0.1
749,774 + PFLU_RS03240 0.55 -0.7
749,875 - PFLU_RS03240 0.59 -0.1
750,030 + PFLU_RS03240 0.66 -0.3
750,036 + PFLU_RS03240 0.66 +0.0
750,093 + PFLU_RS03240 0.69 -0.3
750,094 - PFLU_RS03240 0.69 -0.6
750,094 - PFLU_RS03240 0.69 -0.4
750,175 + PFLU_RS03240 0.73 +0.5
750,176 - PFLU_RS03240 0.73 -1.0
750,176 - PFLU_RS03240 0.73 -0.2
750,223 + PFLU_RS03240 0.75 +1.1
750,224 - PFLU_RS03240 0.75 -0.5
750,224 - PFLU_RS03240 0.75 +0.4
750,265 + PFLU_RS03240 0.77 -0.1
750,265 + PFLU_RS03240 0.77 +1.1
750,265 + PFLU_RS03240 0.77 -1.2
750,265 + PFLU_RS03240 0.77 +2.1
750,265 + PFLU_RS03240 0.77 +1.7
750,265 + PFLU_RS03240 0.77 +0.0
750,265 + PFLU_RS03240 0.77 +0.8
750,265 + PFLU_RS03240 0.77 +0.0
750,266 - PFLU_RS03240 0.77 -1.0
750,266 - PFLU_RS03240 0.77 -2.3
750,266 - PFLU_RS03240 0.77 +1.1
750,266 - PFLU_RS03240 0.77 +0.0
750,266 - PFLU_RS03240 0.77 +0.7
750,266 - PFLU_RS03240 0.77 -0.8
750,269 + PFLU_RS03240 0.77 -0.4
750,269 + PFLU_RS03240 0.77 -0.3
750,269 + PFLU_RS03240 0.77 -0.0
750,269 + PFLU_RS03240 0.77 -1.9
750,269 + PFLU_RS03240 0.77 +0.7
750,270 - PFLU_RS03240 0.77 +0.9
750,270 - PFLU_RS03240 0.77 -1.7
750,270 - PFLU_RS03240 0.77 +0.5
750,270 - PFLU_RS03240 0.77 +0.6
750,358 + PFLU_RS03240 0.81 +1.4
750,358 + PFLU_RS03240 0.81 +1.2
750,358 + PFLU_RS03240 0.81 -0.8
750,358 + PFLU_RS03240 0.81 -0.9
750,358 + PFLU_RS03240 0.81 +0.4
750,358 + PFLU_RS03240 0.81 +0.1
750,358 + PFLU_RS03240 0.81 +0.2
750,358 + PFLU_RS03240 0.81 -1.2
750,358 + PFLU_RS03240 0.81 -1.5
750,358 + PFLU_RS03240 0.81 -1.3
750,358 + PFLU_RS03240 0.81 +0.9
750,358 + PFLU_RS03240 0.81 +0.3
750,358 + PFLU_RS03240 0.81 -0.2
750,358 + PFLU_RS03240 0.81 +0.5
750,358 + PFLU_RS03240 0.81 +0.6
750,359 - PFLU_RS03240 0.81 +0.6
750,359 - PFLU_RS03240 0.81 -1.1
750,359 - PFLU_RS03240 0.81 -0.1
750,359 - PFLU_RS03240 0.81 -0.6
750,359 - PFLU_RS03240 0.81 -0.7
750,359 - PFLU_RS03240 0.81 +0.2
750,359 - PFLU_RS03240 0.81 -0.9
750,359 - PFLU_RS03240 0.81 +0.7
750,359 - PFLU_RS03240 0.81 -0.0
750,359 - PFLU_RS03240 0.81 +0.4
750,359 - PFLU_RS03240 0.81 +0.2
750,359 - PFLU_RS03240 0.81 -0.3
750,359 - PFLU_RS03240 0.81 +0.8
750,359 - PFLU_RS03240 0.81 +0.4
750,574 + -0.3
750,574 + +0.6
750,574 + +0.9
750,802 + +0.9
750,803 - -0.2
750,841 + +0.4
750,841 + -0.4
750,842 - +0.9
750,842 - +0.1
750,842 - -0.5
750,844 + +1.0
750,845 - +1.5
750,868 + +0.9
750,868 + +1.9
750,868 + +0.6
750,868 + +2.1
750,868 + +0.1
750,868 + +0.3
750,868 + -0.3
750,869 - -1.6
750,869 - +1.0
750,869 - -0.3
750,869 - +0.6
750,869 - +1.0
750,869 - -0.6
750,869 - -0.9
750,869 - +0.0
750,869 - +0.6
750,869 - +0.3
750,869 - -0.4
750,869 - +0.6
750,869 - -0.8
750,869 - -0.2
750,869 - +0.4
750,869 - +2.2
750,869 - +1.5
751,005 + PFLU_RS03245 0.43 +0.3
751,005 + PFLU_RS03245 0.43 +0.6
751,005 + PFLU_RS03245 0.43 +1.3
751,006 - PFLU_RS03245 0.44 +0.9
751,006 - PFLU_RS03245 0.44 +0.1
751,006 - PFLU_RS03245 0.44 +1.8
751,006 - PFLU_RS03245 0.44 -1.2
751,078 + PFLU_RS03245 0.62 +1.1
751,078 + PFLU_RS03245 0.62 +0.7
751,078 + PFLU_RS03245 0.62 +1.2
751,078 + PFLU_RS03245 0.62 +0.4
751,078 + PFLU_RS03245 0.62 -0.6
751,078 + PFLU_RS03245 0.62 -2.6
751,078 + PFLU_RS03245 0.62 +0.4
751,078 + PFLU_RS03245 0.62 +0.2
751,078 + PFLU_RS03245 0.62 +0.6
751,078 + PFLU_RS03245 0.62 +2.0
751,078 + PFLU_RS03245 0.62 +0.6
751,078 + PFLU_RS03245 0.62 +1.6
751,078 + PFLU_RS03245 0.62 -1.5
751,079 - PFLU_RS03245 0.63 +0.6
751,079 - PFLU_RS03245 0.63 +1.9
751,079 - PFLU_RS03245 0.63 -0.3
751,079 - PFLU_RS03245 0.63 +0.8
751,079 - PFLU_RS03245 0.63 +1.4
751,079 - PFLU_RS03245 0.63 +1.1
751,079 - PFLU_RS03245 0.63 +0.4
751,079 - PFLU_RS03245 0.63 +1.1
751,079 - PFLU_RS03245 0.63 -0.8
751,079 - PFLU_RS03245 0.63 +1.2
751,079 - PFLU_RS03245 0.63 -0.1
751,079 - PFLU_RS03245 0.63 +0.7
751,079 - PFLU_RS03245 0.63 -1.4
751,141 + PFLU_RS03245 0.79 -0.0
751,141 + PFLU_RS03245 0.79 +0.2
751,141 + PFLU_RS03245 0.79 +1.8
751,141 + PFLU_RS03245 0.79 -1.0
751,141 + PFLU_RS03245 0.79 +1.7
751,142 - PFLU_RS03245 0.79 +1.0
751,142 - PFLU_RS03245 0.79 +1.3
751,142 - PFLU_RS03245 0.79 +0.4
751,282 - -0.9
751,296 + -1.9
751,296 + -1.7
751,296 + +0.9
751,296 + -0.3
751,297 - +1.0
751,297 - -0.4
751,315 + +0.9
751,315 + -0.8
751,316 - +0.2
751,375 + -0.0
751,375 + -0.5
751,375 + +0.3
751,376 - +0.2
751,376 - -0.9
751,376 - -0.4
751,376 - -0.2
751,376 - +0.2
751,545 + PFLU_RS03250 0.89 +0.3
751,546 - +0.9
751,546 - -0.2
751,559 - +0.0
751,559 - +0.9
751,559 - -0.8
751,559 - -1.5
751,577 - -0.1
751,580 + +0.9
751,589 - -0.7
751,589 - -0.0
751,621 + -1.1
751,664 + -2.3
751,665 - +1.3
751,665 - -0.1
751,665 - -0.0

Or see this region's nucleotide sequence