Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS00440 and PFLU_RS00445 are separated by 379 nucleotides PFLU_RS00445 and PFLU_RS30315 are separated by 78 nucleotides PFLU_RS30315 and PFLU_RS00455 are separated by 2 nucleotides PFLU_RS00455 and PFLU_RS00460 are separated by 764 nucleotides
PFLU_RS00440: PFLU_RS00440 - sigma-54-dependent Fis family transcriptional regulator, at 89,512 to 90,858
_RS00440
PFLU_RS00445: PFLU_RS00445 - hypothetical protein, at 91,238 to 91,522
_RS00445
PFLU_RS30315: PFLU_RS30315 - DUF1328 domain-containing protein, at 91,601 to 91,765
_RS30315
PFLU_RS00455: PFLU_RS00455 - hypothetical protein, at 91,768 to 92,235
_RS00455
PFLU_RS00460: PFLU_RS00460 - glutamate/aspartate:proton symporter GltP, at 93,000 to 94,331
_RS00460
Position (kb) 91
92
93 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 90.820 kb on + strand at 90.874 kb on + strand at 90.874 kb on + strand at 90.874 kb on + strand at 90.874 kb on + strand at 90.874 kb on + strand at 90.874 kb on + strand at 90.874 kb on + strand at 90.875 kb on - strand at 90.875 kb on - strand at 90.875 kb on - strand at 90.875 kb on - strand at 90.875 kb on - strand at 90.875 kb on - strand at 90.875 kb on - strand at 90.880 kb on + strand at 90.880 kb on + strand at 90.880 kb on + strand at 90.881 kb on - strand at 90.881 kb on - strand at 90.896 kb on + strand at 90.896 kb on + strand at 90.896 kb on + strand at 90.908 kb on - strand at 90.942 kb on - strand at 90.962 kb on + strand at 90.962 kb on + strand at 90.962 kb on + strand at 90.962 kb on + strand at 90.962 kb on + strand at 90.962 kb on + strand at 90.962 kb on + strand at 90.963 kb on - strand at 90.963 kb on - strand at 90.963 kb on - strand at 90.978 kb on + strand at 90.978 kb on + strand at 90.978 kb on + strand at 90.978 kb on + strand at 90.978 kb on + strand at 90.979 kb on - strand at 90.979 kb on - strand at 90.979 kb on - strand at 90.979 kb on - strand at 90.979 kb on - strand at 90.979 kb on - strand at 90.979 kb on - strand at 90.979 kb on - strand at 90.979 kb on - strand at 90.979 kb on - strand at 90.979 kb on - strand at 91.044 kb on + strand at 91.044 kb on + strand at 91.044 kb on + strand at 91.045 kb on - strand at 91.045 kb on - strand at 91.045 kb on - strand at 91.045 kb on - strand at 91.196 kb on + strand at 91.197 kb on - strand at 91.206 kb on - strand at 91.212 kb on + strand at 91.520 kb on + strand at 91.520 kb on + strand at 91.520 kb on + strand at 91.520 kb on + strand at 91.520 kb on + strand at 91.520 kb on + strand at 91.520 kb on + strand at 91.520 kb on + strand at 91.521 kb on - strand at 91.521 kb on - strand at 91.521 kb on - strand at 91.521 kb on - strand at 91.521 kb on - strand at 91.521 kb on - strand at 91.521 kb on - strand at 91.553 kb on + strand at 91.554 kb on - strand at 91.561 kb on + strand at 91.570 kb on + strand at 91.570 kb on + strand at 91.570 kb on + strand at 91.571 kb on - strand at 91.571 kb on - strand at 91.576 kb on + strand at 91.576 kb on + strand at 91.577 kb on - strand at 91.577 kb on - strand at 91.577 kb on - strand at 91.587 kb on + strand at 91.587 kb on + strand at 91.587 kb on + strand at 91.587 kb on + strand at 91.587 kb on + strand at 91.587 kb on + strand at 91.588 kb on - strand at 91.588 kb on - strand at 91.588 kb on - strand at 91.588 kb on - strand at 91.588 kb on - strand at 91.795 kb on - strand at 91.806 kb on - strand at 91.806 kb on - strand at 91.889 kb on - strand, within PFLU_RS00455 at 92.002 kb on + strand, within PFLU_RS00455 at 92.002 kb on + strand, within PFLU_RS00455 at 92.002 kb on + strand, within PFLU_RS00455 at 92.002 kb on + strand, within PFLU_RS00455 at 92.002 kb on + strand, within PFLU_RS00455 at 92.002 kb on + strand, within PFLU_RS00455 at 92.002 kb on + strand, within PFLU_RS00455 at 92.002 kb on + strand, within PFLU_RS00455 at 92.002 kb on + strand, within PFLU_RS00455 at 92.002 kb on + strand, within PFLU_RS00455 at 92.002 kb on + strand, within PFLU_RS00455 at 92.002 kb on + strand, within PFLU_RS00455 at 92.002 kb on + strand, within PFLU_RS00455 at 92.002 kb on + strand, within PFLU_RS00455 at 92.002 kb on + strand, within PFLU_RS00455 at 92.003 kb on - strand, within PFLU_RS00455 at 92.003 kb on - strand, within PFLU_RS00455 at 92.003 kb on - strand, within PFLU_RS00455 at 92.003 kb on - strand, within PFLU_RS00455 at 92.003 kb on - strand, within PFLU_RS00455 at 92.003 kb on - strand, within PFLU_RS00455 at 92.003 kb on - strand, within PFLU_RS00455 at 92.003 kb on - strand, within PFLU_RS00455 at 92.003 kb on - strand, within PFLU_RS00455 at 92.003 kb on - strand, within PFLU_RS00455 at 92.003 kb on - strand, within PFLU_RS00455 at 92.003 kb on - strand, within PFLU_RS00455 at 92.003 kb on - strand, within PFLU_RS00455 at 92.003 kb on - strand, within PFLU_RS00455 at 92.003 kb on - strand, within PFLU_RS00455 at 92.003 kb on - strand, within PFLU_RS00455 at 92.003 kb on - strand, within PFLU_RS00455 at 92.003 kb on - strand, within PFLU_RS00455 at 92.003 kb on - strand, within PFLU_RS00455 at 92.003 kb on - strand, within PFLU_RS00455 at 92.003 kb on - strand, within PFLU_RS00455 at 92.003 kb on - strand, within PFLU_RS00455 at 92.003 kb on - strand, within PFLU_RS00455 at 92.089 kb on + strand, within PFLU_RS00455 at 92.090 kb on - strand, within PFLU_RS00455 at 92.090 kb on - strand, within PFLU_RS00455 at 92.230 kb on + strand at 92.231 kb on - strand at 92.231 kb on - strand at 92.233 kb on + strand at 92.233 kb on + strand at 92.233 kb on + strand at 92.233 kb on + strand at 92.233 kb on + strand at 92.233 kb on + strand at 92.233 kb on + strand at 92.233 kb on + strand at 92.233 kb on + strand at 92.233 kb on + strand at 92.233 kb on + strand at 92.233 kb on + strand at 92.233 kb on + strand at 92.233 kb on + strand at 92.233 kb on + strand at 92.234 kb on - strand at 92.234 kb on - strand at 92.234 kb on - strand at 92.234 kb on - strand at 92.234 kb on - strand at 92.234 kb on - strand at 92.234 kb on - strand at 92.234 kb on - strand at 92.234 kb on - strand at 92.234 kb on - strand at 92.234 kb on - strand at 92.234 kb on - strand at 92.234 kb on - strand at 92.277 kb on + strand at 92.277 kb on + strand at 92.277 kb on + strand at 92.277 kb on + strand at 92.277 kb on + strand at 92.278 kb on - strand at 92.278 kb on - strand at 92.378 kb on + strand at 92.379 kb on - strand at 92.379 kb on - strand at 92.379 kb on - strand at 92.379 kb on - strand at 92.503 kb on + strand at 92.504 kb on - strand at 92.516 kb on + strand at 92.516 kb on + strand at 92.516 kb on + strand at 92.517 kb on - strand at 92.531 kb on + strand at 92.531 kb on + strand at 92.531 kb on + strand at 92.531 kb on + strand at 92.532 kb on - strand at 92.532 kb on - strand at 92.532 kb on - strand at 92.532 kb on - strand at 92.532 kb on - strand at 92.532 kb on - strand at 92.532 kb on - strand at 92.533 kb on + strand at 92.533 kb on + strand at 92.533 kb on + strand at 92.533 kb on + strand at 92.533 kb on + strand at 92.534 kb on - strand at 92.534 kb on - strand at 92.534 kb on - strand at 92.534 kb on - strand at 92.534 kb on - strand at 92.534 kb on - strand at 92.603 kb on + strand at 92.603 kb on + strand at 92.604 kb on - strand at 92.604 kb on - strand at 92.604 kb on - strand at 92.604 kb on - strand at 92.626 kb on + strand at 92.627 kb on - strand at 92.628 kb on + strand at 92.629 kb on - strand at 92.629 kb on - strand at 92.629 kb on - strand at 92.635 kb on + strand at 92.635 kb on + strand at 92.635 kb on + strand at 92.635 kb on + strand at 92.635 kb on + strand at 92.635 kb on + strand at 92.635 kb on + strand at 92.635 kb on + strand at 92.635 kb on + strand at 92.635 kb on + strand at 92.635 kb on + strand at 92.635 kb on + strand at 92.635 kb on + strand at 92.635 kb on + strand at 92.635 kb on + strand at 92.635 kb on + strand at 92.636 kb on - strand at 92.636 kb on - strand at 92.636 kb on - strand at 92.636 kb on - strand at 92.636 kb on - strand at 92.636 kb on - strand at 92.636 kb on - strand at 92.636 kb on - strand at 92.636 kb on - strand at 92.778 kb on + strand at 92.778 kb on + strand at 92.778 kb on + strand at 92.778 kb on + strand at 92.778 kb on + strand at 92.779 kb on - strand at 92.779 kb on - strand at 92.779 kb on - strand at 92.779 kb on - strand at 92.830 kb on + strand at 92.855 kb on + strand at 92.855 kb on + strand at 92.856 kb on - strand at 92.881 kb on + strand at 92.882 kb on - strand at 92.972 kb on + strand at 92.973 kb on - strand at 92.987 kb on + strand at 92.987 kb on + strand at 92.988 kb on - strand at 92.988 kb on - strand at 92.988 kb on - strand at 92.988 kb on - strand at 92.988 kb on - strand at 93.016 kb on + strand at 93.016 kb on + strand at 93.016 kb on + strand at 93.017 kb on - strand at 93.017 kb on - strand at 93.017 kb on - strand at 93.017 kb on - strand at 93.017 kb on - strand at 93.138 kb on - strand, within PFLU_RS00460 at 93.143 kb on + strand, within PFLU_RS00460
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 90,820 + -0.1 90,874 + -0.3 90,874 + -0.7 90,874 + +0.1 90,874 + +1.2 90,874 + +1.1 90,874 + +0.8 90,874 + -0.4 90,875 - +0.4 90,875 - -0.8 90,875 - -1.4 90,875 - -0.7 90,875 - -0.7 90,875 - +0.7 90,875 - -0.7 90,880 + -0.6 90,880 + +0.4 90,880 + +0.2 90,881 - -1.2 90,881 - -2.4 90,896 + +1.8 90,896 + -0.2 90,896 + -0.9 90,908 - -0.7 90,942 - +0.8 90,962 + +1.4 90,962 + +0.7 90,962 + +0.3 90,962 + -0.7 90,962 + -1.2 90,962 + +1.0 90,962 + +0.2 90,963 - -0.2 90,963 - -0.1 90,963 - +0.8 90,978 + -0.3 90,978 + +1.3 90,978 + -0.6 90,978 + +1.0 90,978 + +0.4 90,979 - +1.0 90,979 - -1.7 90,979 - +0.2 90,979 - -1.7 90,979 - -1.1 90,979 - -0.5 90,979 - -0.1 90,979 - +0.1 90,979 - -1.6 90,979 - +0.4 90,979 - -0.3 91,044 + -0.9 91,044 + +0.7 91,044 + +0.7 91,045 - -0.9 91,045 - +0.5 91,045 - -0.5 91,045 - -0.4 91,196 + -1.9 91,197 - -1.4 91,206 - -0.7 91,212 + +0.9 91,520 + -0.1 91,520 + -0.6 91,520 + +1.4 91,520 + +0.9 91,520 + +0.1 91,520 + -0.1 91,520 + +0.7 91,520 + +1.7 91,521 - +0.9 91,521 - +0.6 91,521 - +0.9 91,521 - +1.0 91,521 - +0.5 91,521 - +1.7 91,521 - -0.4 91,553 + +1.5 91,554 - -2.4 91,561 + -0.3 91,570 + +1.1 91,570 + +0.8 91,570 + +0.8 91,571 - -0.2 91,571 - -0.2 91,576 + -0.6 91,576 + +2.0 91,577 - +0.1 91,577 - +1.6 91,577 - +0.3 91,587 + +0.5 91,587 + +1.8 91,587 + +1.3 91,587 + +0.8 91,587 + -0.1 91,587 + +1.9 91,588 - +0.8 91,588 - +0.6 91,588 - -0.0 91,588 - +0.4 91,588 - -0.1 91,795 - -1.3 91,806 - -0.3 91,806 - +0.2 91,889 - PFLU_RS00455 0.26 +0.1 92,002 + PFLU_RS00455 0.50 +0.4 92,002 + PFLU_RS00455 0.50 -0.7 92,002 + PFLU_RS00455 0.50 +1.4 92,002 + PFLU_RS00455 0.50 -1.6 92,002 + PFLU_RS00455 0.50 +1.4 92,002 + PFLU_RS00455 0.50 +0.3 92,002 + PFLU_RS00455 0.50 -0.1 92,002 + PFLU_RS00455 0.50 -0.1 92,002 + PFLU_RS00455 0.50 -0.2 92,002 + PFLU_RS00455 0.50 +0.4 92,002 + PFLU_RS00455 0.50 +0.8 92,002 + PFLU_RS00455 0.50 -1.0 92,002 + PFLU_RS00455 0.50 -0.1 92,002 + PFLU_RS00455 0.50 +0.6 92,002 + PFLU_RS00455 0.50 -0.1 92,003 - PFLU_RS00455 0.50 +1.3 92,003 - PFLU_RS00455 0.50 -1.4 92,003 - PFLU_RS00455 0.50 +1.2 92,003 - PFLU_RS00455 0.50 +0.6 92,003 - PFLU_RS00455 0.50 +2.6 92,003 - PFLU_RS00455 0.50 -0.8 92,003 - PFLU_RS00455 0.50 +0.1 92,003 - PFLU_RS00455 0.50 -0.6 92,003 - PFLU_RS00455 0.50 -1.0 92,003 - PFLU_RS00455 0.50 -0.0 92,003 - PFLU_RS00455 0.50 +0.2 92,003 - PFLU_RS00455 0.50 -0.1 92,003 - PFLU_RS00455 0.50 +0.2 92,003 - PFLU_RS00455 0.50 +1.0 92,003 - PFLU_RS00455 0.50 -0.1 92,003 - PFLU_RS00455 0.50 -0.2 92,003 - PFLU_RS00455 0.50 +0.3 92,003 - PFLU_RS00455 0.50 -0.6 92,003 - PFLU_RS00455 0.50 -2.7 92,003 - PFLU_RS00455 0.50 -0.3 92,003 - PFLU_RS00455 0.50 -1.5 92,003 - PFLU_RS00455 0.50 +1.6 92,003 - PFLU_RS00455 0.50 -0.2 92,089 + PFLU_RS00455 0.69 +1.3 92,090 - PFLU_RS00455 0.69 -0.3 92,090 - PFLU_RS00455 0.69 +0.4 92,230 + -0.2 92,231 - -1.6 92,231 - -1.1 92,233 + +0.5 92,233 + +0.7 92,233 + -0.1 92,233 + +0.2 92,233 + -0.2 92,233 + +0.6 92,233 + +0.0 92,233 + +1.4 92,233 + +0.3 92,233 + +0.4 92,233 + +1.3 92,233 + -1.7 92,233 + -0.1 92,233 + -0.5 92,233 + +0.1 92,234 - -2.6 92,234 - -1.5 92,234 - -2.3 92,234 - +0.2 92,234 - -0.6 92,234 - -1.3 92,234 - -1.0 92,234 - +0.4 92,234 - -1.1 92,234 - -0.3 92,234 - -0.1 92,234 - +0.3 92,234 - +0.4 92,277 + +0.1 92,277 + +1.6 92,277 + +0.0 92,277 + +0.7 92,277 + +0.9 92,278 - -2.0 92,278 - +0.2 92,378 + +0.1 92,379 - -0.2 92,379 - -2.5 92,379 - +0.9 92,379 - -0.3 92,503 + -0.1 92,504 - +1.9 92,516 + +1.9 92,516 + -2.1 92,516 + +0.8 92,517 - -0.6 92,531 + +0.1 92,531 + +0.2 92,531 + +1.5 92,531 + +1.2 92,532 - -0.3 92,532 - -2.7 92,532 - +0.2 92,532 - -0.7 92,532 - +0.1 92,532 - -0.2 92,532 - -1.3 92,533 + +0.1 92,533 + -0.1 92,533 + +0.9 92,533 + -0.5 92,533 + +1.3 92,534 - +0.3 92,534 - -0.3 92,534 - -0.7 92,534 - +0.3 92,534 - +1.0 92,534 - -0.8 92,603 + +0.4 92,603 + +0.3 92,604 - -0.8 92,604 - -0.3 92,604 - +1.0 92,604 - -0.0 92,626 + +0.0 92,627 - +1.0 92,628 + +1.5 92,629 - -0.7 92,629 - -0.5 92,629 - -1.3 92,635 + +2.8 92,635 + +0.7 92,635 + +1.9 92,635 + +1.3 92,635 + +1.1 92,635 + -1.7 92,635 + -1.1 92,635 + +0.5 92,635 + +1.6 92,635 + -0.2 92,635 + +1.8 92,635 + +1.4 92,635 + -0.1 92,635 + +0.2 92,635 + -1.9 92,635 + +0.2 92,636 - -3.0 92,636 - -0.8 92,636 - +0.0 92,636 - -0.1 92,636 - -0.0 92,636 - +0.1 92,636 - +1.0 92,636 - +0.5 92,636 - +1.5 92,778 + +1.1 92,778 + -0.9 92,778 + -0.3 92,778 + +0.3 92,778 + -0.1 92,779 - +1.0 92,779 - -0.7 92,779 - +0.0 92,779 - -1.2 92,830 + -1.4 92,855 + +0.5 92,855 + +0.1 92,856 - +0.1 92,881 + -0.8 92,882 - +0.8 92,972 + +0.9 92,973 - +2.3 92,987 + -0.3 92,987 + +0.2 92,988 - +1.3 92,988 - +1.3 92,988 - +0.6 92,988 - +1.7 92,988 - +1.3 93,016 + +1.2 93,016 + -1.4 93,016 + +0.3 93,017 - +1.1 93,017 - -0.2 93,017 - +1.1 93,017 - +0.8 93,017 - +0.9 93,138 - PFLU_RS00460 0.10 -1.7 93,143 + PFLU_RS00460 0.11 +1.3
Or see this region's nucleotide sequence