Strain Fitness in Pseudomonas sp. S08-1 around OH686_23395

Experiment: D,L-Malic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_23385 and OH686_23390 are separated by 192 nucleotidesOH686_23390 and OH686_23395 are separated by 212 nucleotidesOH686_23395 and OH686_23400 are separated by 68 nucleotides OH686_23385: OH686_23385 - deoxyribodipyrimidine photolyase-related protein, at 4,737,224 to 4,738,765 _23385 OH686_23390: OH686_23390 - sensory box protein, putative, at 4,738,958 to 4,739,404 _23390 OH686_23395: OH686_23395 - hypothetical protein, at 4,739,617 to 4,740,546 _23395 OH686_23400: OH686_23400 - Succinylglutamate desuccinylase/aspartoacylase, at 4,740,615 to 4,741,727 _23400 Position (kb) 4739 4740 4741Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4738.893 kb on + strandat 4738.893 kb on + strandat 4738.938 kb on - strandat 4739.036 kb on - strand, within OH686_23390at 4739.073 kb on + strand, within OH686_23390at 4739.074 kb on - strand, within OH686_23390at 4739.074 kb on - strand, within OH686_23390at 4739.074 kb on - strand, within OH686_23390at 4739.074 kb on - strand, within OH686_23390at 4739.097 kb on + strand, within OH686_23390at 4739.097 kb on + strand, within OH686_23390at 4739.097 kb on + strand, within OH686_23390at 4739.097 kb on + strand, within OH686_23390at 4739.098 kb on - strand, within OH686_23390at 4739.098 kb on - strand, within OH686_23390at 4739.098 kb on - strand, within OH686_23390at 4739.098 kb on - strand, within OH686_23390at 4739.098 kb on - strand, within OH686_23390at 4739.156 kb on + strand, within OH686_23390at 4739.156 kb on + strand, within OH686_23390at 4739.156 kb on + strand, within OH686_23390at 4739.156 kb on + strand, within OH686_23390at 4739.156 kb on + strand, within OH686_23390at 4739.156 kb on + strand, within OH686_23390at 4739.157 kb on - strand, within OH686_23390at 4739.157 kb on - strand, within OH686_23390at 4739.157 kb on - strand, within OH686_23390at 4739.157 kb on - strand, within OH686_23390at 4739.157 kb on - strand, within OH686_23390at 4739.257 kb on - strand, within OH686_23390at 4739.257 kb on - strand, within OH686_23390at 4739.257 kb on - strand, within OH686_23390at 4739.310 kb on + strand, within OH686_23390at 4739.310 kb on + strand, within OH686_23390at 4739.310 kb on + strand, within OH686_23390at 4739.310 kb on + strand, within OH686_23390at 4739.310 kb on + strand, within OH686_23390at 4739.311 kb on - strand, within OH686_23390at 4739.311 kb on - strand, within OH686_23390at 4739.311 kb on - strand, within OH686_23390at 4739.311 kb on - strand, within OH686_23390at 4739.318 kb on + strand, within OH686_23390at 4739.318 kb on + strand, within OH686_23390at 4739.318 kb on + strand, within OH686_23390at 4739.318 kb on + strand, within OH686_23390at 4739.318 kb on + strand, within OH686_23390at 4739.318 kb on + strand, within OH686_23390at 4739.318 kb on + strand, within OH686_23390at 4739.318 kb on + strand, within OH686_23390at 4739.319 kb on - strand, within OH686_23390at 4739.319 kb on - strand, within OH686_23390at 4739.319 kb on - strand, within OH686_23390at 4739.319 kb on - strand, within OH686_23390at 4739.319 kb on - strand, within OH686_23390at 4739.319 kb on - strand, within OH686_23390at 4739.319 kb on - strand, within OH686_23390at 4739.319 kb on - strand, within OH686_23390at 4739.319 kb on - strand, within OH686_23390at 4739.319 kb on - strand, within OH686_23390at 4739.319 kb on - strand, within OH686_23390at 4739.319 kb on - strand, within OH686_23390at 4739.351 kb on + strand, within OH686_23390at 4739.351 kb on + strand, within OH686_23390at 4739.351 kb on + strand, within OH686_23390at 4739.352 kb on - strand, within OH686_23390at 4739.352 kb on - strand, within OH686_23390at 4739.352 kb on - strand, within OH686_23390at 4739.352 kb on - strand, within OH686_23390at 4739.414 kb on + strandat 4739.415 kb on - strandat 4739.444 kb on - strandat 4739.467 kb on - strandat 4739.560 kb on + strandat 4739.561 kb on - strandat 4739.579 kb on + strandat 4739.579 kb on + strandat 4739.579 kb on + strandat 4739.580 kb on - strandat 4739.670 kb on + strandat 4739.678 kb on + strandat 4739.678 kb on + strandat 4739.782 kb on - strand, within OH686_23395at 4739.878 kb on + strand, within OH686_23395at 4740.044 kb on + strand, within OH686_23395at 4740.080 kb on + strand, within OH686_23395at 4740.080 kb on + strand, within OH686_23395at 4740.080 kb on + strand, within OH686_23395at 4740.080 kb on + strand, within OH686_23395at 4740.080 kb on + strand, within OH686_23395at 4740.080 kb on + strand, within OH686_23395at 4740.080 kb on + strand, within OH686_23395at 4740.081 kb on - strand, within OH686_23395at 4740.081 kb on - strand, within OH686_23395at 4740.081 kb on - strand, within OH686_23395at 4740.081 kb on - strand, within OH686_23395at 4740.081 kb on - strand, within OH686_23395at 4740.081 kb on - strand, within OH686_23395at 4740.103 kb on + strand, within OH686_23395at 4740.103 kb on + strand, within OH686_23395at 4740.103 kb on + strand, within OH686_23395at 4740.103 kb on + strand, within OH686_23395at 4740.104 kb on - strand, within OH686_23395at 4740.104 kb on - strand, within OH686_23395at 4740.104 kb on - strand, within OH686_23395at 4740.104 kb on - strand, within OH686_23395at 4740.107 kb on + strand, within OH686_23395at 4740.107 kb on + strand, within OH686_23395at 4740.107 kb on + strand, within OH686_23395at 4740.107 kb on + strand, within OH686_23395at 4740.107 kb on + strand, within OH686_23395at 4740.107 kb on + strand, within OH686_23395at 4740.107 kb on + strand, within OH686_23395at 4740.107 kb on + strand, within OH686_23395at 4740.107 kb on + strand, within OH686_23395at 4740.107 kb on + strand, within OH686_23395at 4740.108 kb on - strand, within OH686_23395at 4740.108 kb on - strand, within OH686_23395at 4740.108 kb on - strand, within OH686_23395at 4740.108 kb on - strand, within OH686_23395at 4740.108 kb on - strand, within OH686_23395at 4740.108 kb on - strand, within OH686_23395at 4740.108 kb on - strand, within OH686_23395at 4740.108 kb on - strand, within OH686_23395at 4740.108 kb on - strand, within OH686_23395at 4740.108 kb on - strand, within OH686_23395at 4740.125 kb on - strand, within OH686_23395at 4740.513 kb on + strandat 4740.513 kb on + strandat 4740.513 kb on + strandat 4740.513 kb on + strandat 4740.513 kb on + strandat 4740.513 kb on + strandat 4740.513 kb on + strandat 4740.513 kb on + strandat 4740.513 kb on + strandat 4740.513 kb on + strandat 4740.514 kb on - strandat 4740.514 kb on - strandat 4740.514 kb on - strandat 4740.514 kb on - strandat 4740.514 kb on - strandat 4740.515 kb on + strandat 4740.515 kb on + strandat 4740.515 kb on + strandat 4740.515 kb on + strandat 4740.515 kb on + strandat 4740.515 kb on + strandat 4740.515 kb on + strandat 4740.515 kb on + strandat 4740.515 kb on + strandat 4740.515 kb on + strandat 4740.515 kb on + strandat 4740.515 kb on + strandat 4740.516 kb on - strandat 4740.516 kb on - strandat 4740.586 kb on + strandat 4740.587 kb on - strandat 4740.712 kb on + strandat 4740.712 kb on + strandat 4740.712 kb on + strandat 4740.712 kb on + strandat 4740.713 kb on - strandat 4740.713 kb on - strandat 4740.713 kb on - strandat 4740.713 kb on - strandat 4740.713 kb on - strandat 4740.713 kb on - strandat 4740.798 kb on + strand, within OH686_23400at 4740.823 kb on + strand, within OH686_23400at 4740.823 kb on + strand, within OH686_23400at 4740.823 kb on + strand, within OH686_23400at 4740.824 kb on - strand, within OH686_23400at 4740.824 kb on - strand, within OH686_23400at 4740.824 kb on - strand, within OH686_23400at 4740.851 kb on - strand, within OH686_23400at 4740.856 kb on + strand, within OH686_23400at 4740.856 kb on + strand, within OH686_23400at 4741.195 kb on + strand, within OH686_23400at 4741.195 kb on + strand, within OH686_23400at 4741.195 kb on + strand, within OH686_23400at 4741.196 kb on - strand, within OH686_23400at 4741.341 kb on + strand, within OH686_23400at 4741.536 kb on + strand, within OH686_23400at 4741.536 kb on + strand, within OH686_23400at 4741.536 kb on + strand, within OH686_23400at 4741.536 kb on + strand, within OH686_23400at 4741.536 kb on + strand, within OH686_23400at 4741.536 kb on + strand, within OH686_23400at 4741.537 kb on - strand, within OH686_23400at 4741.537 kb on - strand, within OH686_23400at 4741.537 kb on - strand, within OH686_23400at 4741.537 kb on - strand, within OH686_23400at 4741.537 kb on - strand, within OH686_23400at 4741.537 kb on - strand, within OH686_23400

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
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4,738,893 + -1.5
4,738,893 + -1.2
4,738,938 - -0.2
4,739,036 - OH686_23390 0.17 -1.2
4,739,073 + OH686_23390 0.26 +0.8
4,739,074 - OH686_23390 0.26 +0.4
4,739,074 - OH686_23390 0.26 -0.4
4,739,074 - OH686_23390 0.26 +1.0
4,739,074 - OH686_23390 0.26 +0.0
4,739,097 + OH686_23390 0.31 +1.6
4,739,097 + OH686_23390 0.31 +0.0
4,739,097 + OH686_23390 0.31 -0.3
4,739,097 + OH686_23390 0.31 -0.8
4,739,098 - OH686_23390 0.31 -1.9
4,739,098 - OH686_23390 0.31 -0.0
4,739,098 - OH686_23390 0.31 +0.0
4,739,098 - OH686_23390 0.31 +0.5
4,739,098 - OH686_23390 0.31 +0.3
4,739,156 + OH686_23390 0.44 +0.5
4,739,156 + OH686_23390 0.44 -0.5
4,739,156 + OH686_23390 0.44 +0.1
4,739,156 + OH686_23390 0.44 -0.1
4,739,156 + OH686_23390 0.44 +0.1
4,739,156 + OH686_23390 0.44 -0.5
4,739,157 - OH686_23390 0.45 -0.3
4,739,157 - OH686_23390 0.45 +0.0
4,739,157 - OH686_23390 0.45 +0.1
4,739,157 - OH686_23390 0.45 -0.0
4,739,157 - OH686_23390 0.45 +0.0
4,739,257 - OH686_23390 0.67 -0.1
4,739,257 - OH686_23390 0.67 -0.1
4,739,257 - OH686_23390 0.67 +0.1
4,739,310 + OH686_23390 0.79 +1.3
4,739,310 + OH686_23390 0.79 -0.5
4,739,310 + OH686_23390 0.79 -0.6
4,739,310 + OH686_23390 0.79 -0.3
4,739,310 + OH686_23390 0.79 +0.5
4,739,311 - OH686_23390 0.79 -0.2
4,739,311 - OH686_23390 0.79 +0.2
4,739,311 - OH686_23390 0.79 -0.1
4,739,311 - OH686_23390 0.79 -0.2
4,739,318 + OH686_23390 0.81 +0.4
4,739,318 + OH686_23390 0.81 +0.2
4,739,318 + OH686_23390 0.81 +0.2
4,739,318 + OH686_23390 0.81 -0.1
4,739,318 + OH686_23390 0.81 +1.3
4,739,318 + OH686_23390 0.81 +0.0
4,739,318 + OH686_23390 0.81 -1.5
4,739,318 + OH686_23390 0.81 -0.4
4,739,319 - OH686_23390 0.81 +0.6
4,739,319 - OH686_23390 0.81 +1.1
4,739,319 - OH686_23390 0.81 +0.3
4,739,319 - OH686_23390 0.81 -1.0
4,739,319 - OH686_23390 0.81 +0.3
4,739,319 - OH686_23390 0.81 -0.0
4,739,319 - OH686_23390 0.81 +0.6
4,739,319 - OH686_23390 0.81 +0.3
4,739,319 - OH686_23390 0.81 +0.0
4,739,319 - OH686_23390 0.81 -0.3
4,739,319 - OH686_23390 0.81 -0.4
4,739,319 - OH686_23390 0.81 +1.2
4,739,351 + OH686_23390 0.88 +1.1
4,739,351 + OH686_23390 0.88 +0.0
4,739,351 + OH686_23390 0.88 +0.1
4,739,352 - OH686_23390 0.88 +0.2
4,739,352 - OH686_23390 0.88 -0.2
4,739,352 - OH686_23390 0.88 +0.4
4,739,352 - OH686_23390 0.88 +0.4
4,739,414 + -0.1
4,739,415 - +0.1
4,739,444 - +0.3
4,739,467 - +0.0
4,739,560 + +0.0
4,739,561 - -2.4
4,739,579 + -0.6
4,739,579 + -0.7
4,739,579 + -0.9
4,739,580 - +0.3
4,739,670 + -0.6
4,739,678 + +0.4
4,739,678 + -0.3
4,739,782 - OH686_23395 0.18 +0.4
4,739,878 + OH686_23395 0.28 -0.1
4,740,044 + OH686_23395 0.46 +1.5
4,740,080 + OH686_23395 0.50 +1.6
4,740,080 + OH686_23395 0.50 +0.1
4,740,080 + OH686_23395 0.50 -1.0
4,740,080 + OH686_23395 0.50 -0.1
4,740,080 + OH686_23395 0.50 -1.8
4,740,080 + OH686_23395 0.50 +0.6
4,740,080 + OH686_23395 0.50 +0.4
4,740,081 - OH686_23395 0.50 +0.3
4,740,081 - OH686_23395 0.50 -0.5
4,740,081 - OH686_23395 0.50 +0.1
4,740,081 - OH686_23395 0.50 -0.2
4,740,081 - OH686_23395 0.50 -1.0
4,740,081 - OH686_23395 0.50 +0.6
4,740,103 + OH686_23395 0.52 +1.8
4,740,103 + OH686_23395 0.52 +2.0
4,740,103 + OH686_23395 0.52 -0.1
4,740,103 + OH686_23395 0.52 -1.2
4,740,104 - OH686_23395 0.52 -0.4
4,740,104 - OH686_23395 0.52 -1.0
4,740,104 - OH686_23395 0.52 +0.3
4,740,104 - OH686_23395 0.52 +1.5
4,740,107 + OH686_23395 0.53 -1.7
4,740,107 + OH686_23395 0.53 -0.3
4,740,107 + OH686_23395 0.53 +0.3
4,740,107 + OH686_23395 0.53 -0.5
4,740,107 + OH686_23395 0.53 +0.2
4,740,107 + OH686_23395 0.53 +0.9
4,740,107 + OH686_23395 0.53 +0.6
4,740,107 + OH686_23395 0.53 +0.3
4,740,107 + OH686_23395 0.53 -0.5
4,740,107 + OH686_23395 0.53 +1.1
4,740,108 - OH686_23395 0.53 +0.4
4,740,108 - OH686_23395 0.53 -0.4
4,740,108 - OH686_23395 0.53 +1.1
4,740,108 - OH686_23395 0.53 +0.4
4,740,108 - OH686_23395 0.53 +0.3
4,740,108 - OH686_23395 0.53 +0.4
4,740,108 - OH686_23395 0.53 -0.7
4,740,108 - OH686_23395 0.53 +1.2
4,740,108 - OH686_23395 0.53 -0.5
4,740,108 - OH686_23395 0.53 -1.0
4,740,125 - OH686_23395 0.55 -0.6
4,740,513 + +0.1
4,740,513 + +1.2
4,740,513 + -0.4
4,740,513 + -0.3
4,740,513 + +0.3
4,740,513 + -1.0
4,740,513 + -0.2
4,740,513 + -0.3
4,740,513 + +0.5
4,740,513 + -0.4
4,740,514 - +0.1
4,740,514 - +0.1
4,740,514 - +0.6
4,740,514 - -0.8
4,740,514 - -0.6
4,740,515 + +0.8
4,740,515 + +0.5
4,740,515 + +0.3
4,740,515 + +0.5
4,740,515 + -1.0
4,740,515 + +0.8
4,740,515 + -2.9
4,740,515 + -0.2
4,740,515 + -0.5
4,740,515 + -0.3
4,740,515 + +0.2
4,740,515 + +0.6
4,740,516 - +0.4
4,740,516 - +0.9
4,740,586 + +0.3
4,740,587 - +1.0
4,740,712 + +1.8
4,740,712 + -0.4
4,740,712 + -0.4
4,740,712 + -0.2
4,740,713 - +0.3
4,740,713 - -1.1
4,740,713 - -0.0
4,740,713 - -1.1
4,740,713 - -0.7
4,740,713 - -0.5
4,740,798 + OH686_23400 0.16 +0.6
4,740,823 + OH686_23400 0.19 -1.2
4,740,823 + OH686_23400 0.19 +1.2
4,740,823 + OH686_23400 0.19 -0.2
4,740,824 - OH686_23400 0.19 +0.6
4,740,824 - OH686_23400 0.19 +1.6
4,740,824 - OH686_23400 0.19 -0.6
4,740,851 - OH686_23400 0.21 -0.8
4,740,856 + OH686_23400 0.22 -0.2
4,740,856 + OH686_23400 0.22 +0.4
4,741,195 + OH686_23400 0.52 +0.6
4,741,195 + OH686_23400 0.52 +0.5
4,741,195 + OH686_23400 0.52 -0.2
4,741,196 - OH686_23400 0.52 -0.1
4,741,341 + OH686_23400 0.65 +1.0
4,741,536 + OH686_23400 0.83 +2.2
4,741,536 + OH686_23400 0.83 +0.2
4,741,536 + OH686_23400 0.83 +0.7
4,741,536 + OH686_23400 0.83 +0.6
4,741,536 + OH686_23400 0.83 -0.3
4,741,536 + OH686_23400 0.83 +0.3
4,741,537 - OH686_23400 0.83 -2.6
4,741,537 - OH686_23400 0.83 +0.6
4,741,537 - OH686_23400 0.83 -0.5
4,741,537 - OH686_23400 0.83 -0.1
4,741,537 - OH686_23400 0.83 -0.2
4,741,537 - OH686_23400 0.83 +0.6

Or see this region's nucleotide sequence