Strain Fitness in Pseudomonas sp. S08-1 around OH686_21165

Experiment: D,L-Malic Acid (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOH686_21150 and OH686_21155 are separated by 52 nucleotidesOH686_21155 and OH686_21160 are separated by 60 nucleotidesOH686_21160 and OH686_21165 are separated by 10 nucleotidesOH686_21165 and OH686_21170 are separated by 21 nucleotides OH686_21150: OH686_21150 - 6-phosphogluconolactonase , eukaryotic type, at 4,334,086 to 4,334,799 _21150 OH686_21155: OH686_21155 - CDS, at 4,334,852 to 4,334,965 _21155 OH686_21160: OH686_21160 - PhnB protein, at 4,335,026 to 4,335,448 _21160 OH686_21165: OH686_21165 - PhnB protein / putative DNA binding 3-demethylubiquinone-9 3-methyltransferase domain protein, at 4,335,459 to 4,335,881 _21165 OH686_21170: OH686_21170 - Transcriptional regulator, AraC family, at 4,335,903 to 4,336,646 _21170 Position (kb) 4335 4336Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4334.487 kb on + strand, within OH686_21150at 4334.869 kb on + strand, within OH686_21155at 4334.883 kb on + strand, within OH686_21155at 4334.884 kb on - strand, within OH686_21155at 4334.884 kb on - strand, within OH686_21155at 4334.884 kb on - strand, within OH686_21155at 4334.884 kb on - strand, within OH686_21155at 4334.884 kb on - strand, within OH686_21155at 4334.884 kb on - strand, within OH686_21155at 4334.884 kb on - strand, within OH686_21155at 4335.042 kb on + strandat 4335.042 kb on + strandat 4335.042 kb on + strandat 4335.042 kb on + strandat 4335.113 kb on + strand, within OH686_21160at 4335.113 kb on + strand, within OH686_21160at 4335.113 kb on + strand, within OH686_21160at 4335.113 kb on + strand, within OH686_21160at 4335.113 kb on + strand, within OH686_21160at 4335.113 kb on + strand, within OH686_21160at 4335.114 kb on - strand, within OH686_21160at 4335.114 kb on - strand, within OH686_21160at 4335.114 kb on - strand, within OH686_21160at 4335.114 kb on - strand, within OH686_21160at 4335.446 kb on + strandat 4335.474 kb on + strandat 4335.475 kb on - strandat 4335.475 kb on - strandat 4335.475 kb on - strandat 4335.516 kb on + strand, within OH686_21165at 4335.516 kb on + strand, within OH686_21165at 4335.516 kb on + strand, within OH686_21165at 4335.516 kb on + strand, within OH686_21165at 4335.517 kb on - strand, within OH686_21165at 4335.517 kb on - strand, within OH686_21165at 4335.676 kb on - strand, within OH686_21165at 4335.676 kb on - strand, within OH686_21165at 4335.676 kb on - strand, within OH686_21165at 4335.932 kb on - strandat 4335.994 kb on + strand, within OH686_21170at 4336.081 kb on + strand, within OH686_21170at 4336.081 kb on + strand, within OH686_21170at 4336.081 kb on + strand, within OH686_21170at 4336.082 kb on - strand, within OH686_21170at 4336.186 kb on + strand, within OH686_21170at 4336.199 kb on + strand, within OH686_21170at 4336.369 kb on + strand, within OH686_21170at 4336.369 kb on + strand, within OH686_21170at 4336.369 kb on + strand, within OH686_21170at 4336.570 kb on + strand, within OH686_21170at 4336.571 kb on - strand, within OH686_21170at 4336.571 kb on - strand, within OH686_21170at 4336.571 kb on - strand, within OH686_21170at 4336.571 kb on - strand, within OH686_21170at 4336.626 kb on - strandat 4336.654 kb on + strandat 4336.654 kb on + strandat 4336.654 kb on + strandat 4336.654 kb on + strandat 4336.654 kb on + strandat 4336.654 kb on + strandat 4336.655 kb on - strandat 4336.655 kb on - strandat 4336.655 kb on - strandat 4336.786 kb on + strandat 4336.786 kb on + strandat 4336.786 kb on + strandat 4336.786 kb on + strandat 4336.786 kb on + strandat 4336.786 kb on + strandat 4336.786 kb on + strandat 4336.786 kb on + strandat 4336.786 kb on + strandat 4336.786 kb on + strandat 4336.786 kb on + strandat 4336.786 kb on + strandat 4336.786 kb on + strandat 4336.786 kb on + strandat 4336.786 kb on + strandat 4336.787 kb on - strandat 4336.787 kb on - strandat 4336.787 kb on - strandat 4336.787 kb on - strandat 4336.787 kb on - strandat 4336.787 kb on - strandat 4336.787 kb on - strandat 4336.860 kb on + strandat 4336.860 kb on + strandat 4336.860 kb on + strandat 4336.860 kb on + strandat 4336.861 kb on - strandat 4336.861 kb on - strandat 4336.862 kb on + strandat 4336.862 kb on + strandat 4336.862 kb on + strandat 4336.862 kb on + strandat 4336.862 kb on + strandat 4336.862 kb on + strandat 4336.862 kb on + strandat 4336.862 kb on + strandat 4336.862 kb on + strandat 4336.862 kb on + strandat 4336.862 kb on + strandat 4336.862 kb on + strandat 4336.862 kb on + strandat 4336.862 kb on + strandat 4336.862 kb on + strandat 4336.862 kb on + strandat 4336.862 kb on + strandat 4336.862 kb on + strandat 4336.862 kb on + strandat 4336.863 kb on - strandat 4336.863 kb on - strandat 4336.863 kb on - strandat 4336.863 kb on - strandat 4336.863 kb on - strandat 4336.863 kb on - strandat 4336.863 kb on - strandat 4336.863 kb on - strandat 4336.863 kb on - strandat 4336.863 kb on - strandat 4336.863 kb on - strandat 4336.863 kb on - strandat 4336.863 kb on - strandat 4336.863 kb on - strandat 4336.863 kb on - strandat 4336.863 kb on - strandat 4336.863 kb on - strandat 4336.863 kb on - strandat 4336.863 kb on - strandat 4336.866 kb on + strandat 4336.866 kb on + strandat 4336.867 kb on - strandat 4336.867 kb on - strandat 4336.867 kb on - strandat 4336.867 kb on - strandat 4336.867 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
remove
4,334,487 + OH686_21150 0.56 -3.6
4,334,869 + OH686_21155 0.15 +0.5
4,334,883 + OH686_21155 0.27 +1.4
4,334,884 - OH686_21155 0.28 -0.0
4,334,884 - OH686_21155 0.28 +0.4
4,334,884 - OH686_21155 0.28 +0.6
4,334,884 - OH686_21155 0.28 +1.0
4,334,884 - OH686_21155 0.28 +0.1
4,334,884 - OH686_21155 0.28 -0.2
4,334,884 - OH686_21155 0.28 -0.6
4,335,042 + -0.4
4,335,042 + -0.6
4,335,042 + +0.9
4,335,042 + -0.8
4,335,113 + OH686_21160 0.21 -0.4
4,335,113 + OH686_21160 0.21 -1.6
4,335,113 + OH686_21160 0.21 +0.8
4,335,113 + OH686_21160 0.21 -0.1
4,335,113 + OH686_21160 0.21 -0.3
4,335,113 + OH686_21160 0.21 +0.2
4,335,114 - OH686_21160 0.21 -0.2
4,335,114 - OH686_21160 0.21 -0.0
4,335,114 - OH686_21160 0.21 +0.7
4,335,114 - OH686_21160 0.21 -0.7
4,335,446 + -0.4
4,335,474 + -0.4
4,335,475 - +0.2
4,335,475 - +0.3
4,335,475 - +0.8
4,335,516 + OH686_21165 0.13 +0.2
4,335,516 + OH686_21165 0.13 -0.3
4,335,516 + OH686_21165 0.13 +0.4
4,335,516 + OH686_21165 0.13 +0.4
4,335,517 - OH686_21165 0.14 +0.0
4,335,517 - OH686_21165 0.14 +2.6
4,335,676 - OH686_21165 0.51 +0.4
4,335,676 - OH686_21165 0.51 -0.7
4,335,676 - OH686_21165 0.51 +0.3
4,335,932 - -0.7
4,335,994 + OH686_21170 0.12 +0.0
4,336,081 + OH686_21170 0.24 -0.8
4,336,081 + OH686_21170 0.24 -0.2
4,336,081 + OH686_21170 0.24 +0.7
4,336,082 - OH686_21170 0.24 -0.4
4,336,186 + OH686_21170 0.38 +0.2
4,336,199 + OH686_21170 0.40 -1.4
4,336,369 + OH686_21170 0.63 -0.3
4,336,369 + OH686_21170 0.63 +0.7
4,336,369 + OH686_21170 0.63 -0.2
4,336,570 + OH686_21170 0.90 -0.2
4,336,571 - OH686_21170 0.90 -0.7
4,336,571 - OH686_21170 0.90 -0.3
4,336,571 - OH686_21170 0.90 +0.4
4,336,571 - OH686_21170 0.90 +0.4
4,336,626 - +0.4
4,336,654 + -0.3
4,336,654 + -0.9
4,336,654 + -0.2
4,336,654 + +0.3
4,336,654 + -0.5
4,336,654 + +0.0
4,336,655 - +0.5
4,336,655 - +0.2
4,336,655 - +0.4
4,336,786 + +1.0
4,336,786 + -1.3
4,336,786 + +0.6
4,336,786 + -0.1
4,336,786 + -1.1
4,336,786 + +0.9
4,336,786 + -0.2
4,336,786 + -0.6
4,336,786 + -0.4
4,336,786 + +0.8
4,336,786 + +0.7
4,336,786 + +0.2
4,336,786 + -0.5
4,336,786 + +1.4
4,336,786 + +0.6
4,336,787 - -0.5
4,336,787 - -0.1
4,336,787 - +0.6
4,336,787 - +0.0
4,336,787 - -0.7
4,336,787 - +1.2
4,336,787 - -0.3
4,336,860 + -0.5
4,336,860 + -0.2
4,336,860 + +1.9
4,336,860 + -0.3
4,336,861 - +0.2
4,336,861 - +0.1
4,336,862 + -0.1
4,336,862 + +0.1
4,336,862 + -0.8
4,336,862 + +0.6
4,336,862 + -0.1
4,336,862 + -0.1
4,336,862 + +1.2
4,336,862 + +0.3
4,336,862 + +0.0
4,336,862 + -0.0
4,336,862 + +0.4
4,336,862 + -0.0
4,336,862 + -0.3
4,336,862 + -0.4
4,336,862 + -1.5
4,336,862 + -0.5
4,336,862 + -0.1
4,336,862 + -0.1
4,336,862 + +0.8
4,336,863 - +0.7
4,336,863 - +0.1
4,336,863 - +0.1
4,336,863 - +0.0
4,336,863 - +0.2
4,336,863 - -0.2
4,336,863 - -0.5
4,336,863 - +0.0
4,336,863 - +1.6
4,336,863 - -1.0
4,336,863 - +0.3
4,336,863 - +0.5
4,336,863 - -0.4
4,336,863 - -0.7
4,336,863 - -1.0
4,336,863 - -0.5
4,336,863 - +0.3
4,336,863 - +0.3
4,336,863 - +0.2
4,336,866 + -0.1
4,336,866 + -0.3
4,336,867 - +0.4
4,336,867 - -0.8
4,336,867 - +1.5
4,336,867 - -0.9
4,336,867 - -0.4

Or see this region's nucleotide sequence