Strain Fitness in Pseudomonas sp. S08-1 around OH686_09285

Experiment: D,L-Malic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_09280 and OH686_09285 are separated by 210 nucleotidesOH686_09285 and OH686_09290 are separated by 72 nucleotidesOH686_09290 and OH686_09295 overlap by 1 nucleotides OH686_09280: OH686_09280 - Methyl-accepting chemotaxis sensor/transducer protein, at 1,895,381 to 1,896,697 _09280 OH686_09285: OH686_09285 - lipoyl synthase, at 1,896,908 to 1,897,960 _09285 OH686_09290: OH686_09290 - lipoyl(octanoyl) transferase, at 1,898,033 to 1,898,650 _09290 OH686_09295: OH686_09295 - Proposed lipoate regulatory protein YbeD, at 1,898,650 to 1,898,928 _09295 Position (kb) 1896 1897 1898Strain fitness (log2 ratio) -2 -1 0 1 2at 1895.966 kb on + strand, within OH686_09280at 1895.966 kb on + strand, within OH686_09280at 1895.966 kb on + strand, within OH686_09280at 1895.966 kb on + strand, within OH686_09280at 1895.966 kb on + strand, within OH686_09280at 1895.966 kb on + strand, within OH686_09280at 1895.966 kb on + strand, within OH686_09280at 1895.966 kb on + strand, within OH686_09280at 1895.967 kb on - strand, within OH686_09280at 1895.967 kb on - strand, within OH686_09280at 1895.967 kb on - strand, within OH686_09280at 1895.967 kb on - strand, within OH686_09280at 1895.967 kb on - strand, within OH686_09280at 1895.967 kb on - strand, within OH686_09280at 1895.967 kb on - strand, within OH686_09280at 1895.967 kb on - strand, within OH686_09280at 1895.967 kb on - strand, within OH686_09280at 1895.967 kb on - strand, within OH686_09280at 1895.981 kb on + strand, within OH686_09280at 1896.080 kb on + strand, within OH686_09280at 1896.080 kb on + strand, within OH686_09280at 1896.080 kb on + strand, within OH686_09280at 1896.080 kb on + strand, within OH686_09280at 1896.081 kb on - strand, within OH686_09280at 1896.081 kb on - strand, within OH686_09280at 1896.081 kb on - strand, within OH686_09280at 1896.081 kb on - strand, within OH686_09280at 1896.113 kb on + strand, within OH686_09280at 1896.113 kb on + strand, within OH686_09280at 1896.113 kb on + strand, within OH686_09280at 1896.113 kb on + strand, within OH686_09280at 1896.113 kb on + strand, within OH686_09280at 1896.113 kb on + strand, within OH686_09280at 1896.113 kb on + strand, within OH686_09280at 1896.113 kb on + strand, within OH686_09280at 1896.113 kb on + strand, within OH686_09280at 1896.113 kb on + strand, within OH686_09280at 1896.113 kb on + strand, within OH686_09280at 1896.113 kb on + strand, within OH686_09280at 1896.113 kb on + strand, within OH686_09280at 1896.113 kb on + strand, within OH686_09280at 1896.113 kb on + strand, within OH686_09280at 1896.113 kb on + strand, within OH686_09280at 1896.113 kb on + strand, within OH686_09280at 1896.113 kb on + strand, within OH686_09280at 1896.113 kb on + strand, within OH686_09280at 1896.113 kb on + strand, within OH686_09280at 1896.113 kb on + strand, within OH686_09280at 1896.113 kb on + strand, within OH686_09280at 1896.113 kb on + strand, within OH686_09280at 1896.113 kb on + strand, within OH686_09280at 1896.113 kb on + strand, within OH686_09280at 1896.114 kb on - strand, within OH686_09280at 1896.114 kb on - strand, within OH686_09280at 1896.114 kb on - strand, within OH686_09280at 1896.114 kb on - strand, within OH686_09280at 1896.114 kb on - strand, within OH686_09280at 1896.114 kb on - strand, within OH686_09280at 1896.114 kb on - strand, within OH686_09280at 1896.114 kb on - strand, within OH686_09280at 1896.114 kb on - strand, within OH686_09280at 1896.114 kb on - strand, within OH686_09280at 1896.114 kb on - strand, within OH686_09280at 1896.114 kb on - strand, within OH686_09280at 1896.114 kb on - strand, within OH686_09280at 1896.114 kb on - strand, within OH686_09280at 1896.114 kb on - strand, within OH686_09280at 1896.114 kb on - strand, within OH686_09280at 1896.114 kb on - strand, within OH686_09280at 1896.115 kb on + strand, within OH686_09280at 1896.115 kb on + strand, within OH686_09280at 1896.115 kb on + strand, within OH686_09280at 1896.115 kb on + strand, within OH686_09280at 1896.115 kb on + strand, within OH686_09280at 1896.115 kb on + strand, within OH686_09280at 1896.115 kb on + strand, within OH686_09280at 1896.115 kb on + strand, within OH686_09280at 1896.115 kb on + strand, within OH686_09280at 1896.115 kb on + strand, within OH686_09280at 1896.116 kb on - strand, within OH686_09280at 1896.116 kb on - strand, within OH686_09280at 1896.116 kb on - strand, within OH686_09280at 1896.116 kb on - strand, within OH686_09280at 1896.116 kb on - strand, within OH686_09280at 1896.116 kb on - strand, within OH686_09280at 1896.116 kb on - strand, within OH686_09280at 1896.116 kb on - strand, within OH686_09280at 1896.116 kb on - strand, within OH686_09280at 1896.116 kb on - strand, within OH686_09280at 1896.116 kb on - strand, within OH686_09280at 1896.116 kb on - strand, within OH686_09280at 1896.116 kb on - strand, within OH686_09280at 1896.116 kb on - strand, within OH686_09280at 1896.116 kb on - strand, within OH686_09280at 1896.116 kb on - strand, within OH686_09280at 1896.116 kb on - strand, within OH686_09280at 1896.194 kb on + strand, within OH686_09280at 1896.194 kb on + strand, within OH686_09280at 1896.194 kb on + strand, within OH686_09280at 1896.195 kb on - strand, within OH686_09280at 1896.247 kb on - strand, within OH686_09280at 1896.247 kb on - strand, within OH686_09280at 1896.737 kb on + strandat 1896.737 kb on + strandat 1896.737 kb on + strandat 1896.738 kb on - strandat 1896.738 kb on - strandat 1896.738 kb on - strandat 1896.738 kb on - strandat 1896.738 kb on - strandat 1896.738 kb on - strandat 1896.738 kb on - strandat 1896.834 kb on + strandat 1896.834 kb on + strandat 1896.835 kb on - strandat 1896.835 kb on - strandat 1896.835 kb on - strandat 1896.835 kb on - strandat 1896.849 kb on - strandat 1897.891 kb on - strandat 1898.023 kb on + strandat 1898.024 kb on - strandat 1898.024 kb on - strandat 1898.024 kb on - strandat 1898.024 kb on - strandat 1898.024 kb on - strandat 1898.040 kb on + strandat 1898.651 kb on + strandat 1898.651 kb on + strandat 1898.651 kb on + strandat 1898.651 kb on + strandat 1898.651 kb on + strandat 1898.652 kb on - strandat 1898.912 kb on - strandat 1898.912 kb on - strandat 1898.912 kb on - strandat 1898.912 kb on - strandat 1898.912 kb on - strandat 1898.912 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
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1,895,966 + OH686_09280 0.44 +1.4
1,895,966 + OH686_09280 0.44 +0.4
1,895,966 + OH686_09280 0.44 -0.1
1,895,966 + OH686_09280 0.44 +0.1
1,895,966 + OH686_09280 0.44 -0.6
1,895,966 + OH686_09280 0.44 +0.7
1,895,966 + OH686_09280 0.44 -0.1
1,895,966 + OH686_09280 0.44 +0.3
1,895,967 - OH686_09280 0.44 +0.6
1,895,967 - OH686_09280 0.44 -0.2
1,895,967 - OH686_09280 0.44 +0.4
1,895,967 - OH686_09280 0.44 +0.1
1,895,967 - OH686_09280 0.44 +0.4
1,895,967 - OH686_09280 0.44 -0.5
1,895,967 - OH686_09280 0.44 -0.3
1,895,967 - OH686_09280 0.44 +0.7
1,895,967 - OH686_09280 0.44 -1.1
1,895,967 - OH686_09280 0.44 -0.4
1,895,981 + OH686_09280 0.46 -2.2
1,896,080 + OH686_09280 0.53 -0.3
1,896,080 + OH686_09280 0.53 +0.0
1,896,080 + OH686_09280 0.53 -0.0
1,896,080 + OH686_09280 0.53 -0.3
1,896,081 - OH686_09280 0.53 +0.8
1,896,081 - OH686_09280 0.53 -0.4
1,896,081 - OH686_09280 0.53 +0.8
1,896,081 - OH686_09280 0.53 -0.3
1,896,113 + OH686_09280 0.56 -0.4
1,896,113 + OH686_09280 0.56 +0.0
1,896,113 + OH686_09280 0.56 +0.0
1,896,113 + OH686_09280 0.56 -0.3
1,896,113 + OH686_09280 0.56 +0.6
1,896,113 + OH686_09280 0.56 -0.2
1,896,113 + OH686_09280 0.56 +0.1
1,896,113 + OH686_09280 0.56 +0.2
1,896,113 + OH686_09280 0.56 +0.6
1,896,113 + OH686_09280 0.56 -0.8
1,896,113 + OH686_09280 0.56 +0.2
1,896,113 + OH686_09280 0.56 -0.0
1,896,113 + OH686_09280 0.56 -0.5
1,896,113 + OH686_09280 0.56 +0.1
1,896,113 + OH686_09280 0.56 -0.6
1,896,113 + OH686_09280 0.56 -2.1
1,896,113 + OH686_09280 0.56 +1.0
1,896,113 + OH686_09280 0.56 +0.3
1,896,113 + OH686_09280 0.56 +0.3
1,896,113 + OH686_09280 0.56 -1.1
1,896,113 + OH686_09280 0.56 +1.5
1,896,113 + OH686_09280 0.56 -0.4
1,896,113 + OH686_09280 0.56 -0.3
1,896,113 + OH686_09280 0.56 +0.3
1,896,113 + OH686_09280 0.56 +0.1
1,896,114 - OH686_09280 0.56 +0.2
1,896,114 - OH686_09280 0.56 -0.4
1,896,114 - OH686_09280 0.56 +2.3
1,896,114 - OH686_09280 0.56 -0.0
1,896,114 - OH686_09280 0.56 +0.5
1,896,114 - OH686_09280 0.56 +0.7
1,896,114 - OH686_09280 0.56 -0.3
1,896,114 - OH686_09280 0.56 +0.6
1,896,114 - OH686_09280 0.56 -0.4
1,896,114 - OH686_09280 0.56 -1.5
1,896,114 - OH686_09280 0.56 +0.6
1,896,114 - OH686_09280 0.56 +0.2
1,896,114 - OH686_09280 0.56 +0.2
1,896,114 - OH686_09280 0.56 +0.8
1,896,114 - OH686_09280 0.56 +0.8
1,896,114 - OH686_09280 0.56 +0.4
1,896,114 - OH686_09280 0.56 -1.3
1,896,115 + OH686_09280 0.56 +0.6
1,896,115 + OH686_09280 0.56 -0.5
1,896,115 + OH686_09280 0.56 +0.3
1,896,115 + OH686_09280 0.56 +0.2
1,896,115 + OH686_09280 0.56 +0.7
1,896,115 + OH686_09280 0.56 +0.2
1,896,115 + OH686_09280 0.56 +0.4
1,896,115 + OH686_09280 0.56 +0.2
1,896,115 + OH686_09280 0.56 +0.4
1,896,115 + OH686_09280 0.56 +0.2
1,896,116 - OH686_09280 0.56 +0.4
1,896,116 - OH686_09280 0.56 +0.1
1,896,116 - OH686_09280 0.56 +0.9
1,896,116 - OH686_09280 0.56 +0.0
1,896,116 - OH686_09280 0.56 -0.3
1,896,116 - OH686_09280 0.56 +0.4
1,896,116 - OH686_09280 0.56 -0.8
1,896,116 - OH686_09280 0.56 +0.3
1,896,116 - OH686_09280 0.56 +0.0
1,896,116 - OH686_09280 0.56 +0.9
1,896,116 - OH686_09280 0.56 +0.2
1,896,116 - OH686_09280 0.56 -0.9
1,896,116 - OH686_09280 0.56 +0.6
1,896,116 - OH686_09280 0.56 -1.5
1,896,116 - OH686_09280 0.56 -0.5
1,896,116 - OH686_09280 0.56 -0.7
1,896,116 - OH686_09280 0.56 +1.0
1,896,194 + OH686_09280 0.62 +1.3
1,896,194 + OH686_09280 0.62 -0.3
1,896,194 + OH686_09280 0.62 -0.7
1,896,195 - OH686_09280 0.62 -0.2
1,896,247 - OH686_09280 0.66 -0.8
1,896,247 - OH686_09280 0.66 +0.2
1,896,737 + -0.4
1,896,737 + -0.9
1,896,737 + +0.2
1,896,738 - -0.8
1,896,738 - +0.9
1,896,738 - -0.2
1,896,738 - +0.2
1,896,738 - -0.9
1,896,738 - -1.6
1,896,738 - +0.3
1,896,834 + -1.9
1,896,834 + +0.2
1,896,835 - +0.7
1,896,835 - +0.4
1,896,835 - +0.6
1,896,835 - -0.7
1,896,849 - -1.3
1,897,891 - +0.0
1,898,023 + -0.9
1,898,024 - +0.1
1,898,024 - -1.2
1,898,024 - -0.8
1,898,024 - +0.4
1,898,024 - -0.5
1,898,040 + -0.3
1,898,651 + -0.0
1,898,651 + -1.3
1,898,651 + +1.0
1,898,651 + +0.6
1,898,651 + +0.0
1,898,652 - -0.1
1,898,912 - +0.6
1,898,912 - +0.8
1,898,912 - +0.2
1,898,912 - +1.0
1,898,912 - +1.6
1,898,912 - -0.7

Or see this region's nucleotide sequence