Strain Fitness in Pseudomonas sp. S08-1 around OH686_08110

Experiment: D,L-Malic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_08105 and OH686_08110 are separated by 63 nucleotidesOH686_08110 and OH686_08115 are separated by 157 nucleotides OH686_08105: OH686_08105 - Protein-methionine-sulfoxide reductase catalytic subunit MsrP, at 1,649,941 to 1,650,942 _08105 OH686_08110: OH686_08110 - CDP-diacylglycerol-serine O-phosphatidyltransferase, at 1,651,006 to 1,651,821 _08110 OH686_08115: OH686_08115 - ketol-acid reductoisomerase, at 1,651,979 to 1,652,995 _08115 Position (kb) 1651 1652Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1650.013 kb on - strandat 1650.040 kb on - strandat 1650.107 kb on + strand, within OH686_08105at 1650.107 kb on + strand, within OH686_08105at 1650.107 kb on + strand, within OH686_08105at 1650.107 kb on + strand, within OH686_08105at 1650.107 kb on + strand, within OH686_08105at 1650.107 kb on + strand, within OH686_08105at 1650.108 kb on - strand, within OH686_08105at 1650.108 kb on - strand, within OH686_08105at 1650.108 kb on - strand, within OH686_08105at 1650.108 kb on - strand, within OH686_08105at 1650.108 kb on - strand, within OH686_08105at 1650.116 kb on + strand, within OH686_08105at 1650.116 kb on + strand, within OH686_08105at 1650.116 kb on + strand, within OH686_08105at 1650.117 kb on - strand, within OH686_08105at 1650.144 kb on + strand, within OH686_08105at 1650.144 kb on + strand, within OH686_08105at 1650.145 kb on - strand, within OH686_08105at 1650.145 kb on - strand, within OH686_08105at 1650.145 kb on - strand, within OH686_08105at 1650.145 kb on - strand, within OH686_08105at 1650.206 kb on + strand, within OH686_08105at 1650.206 kb on + strand, within OH686_08105at 1650.206 kb on + strand, within OH686_08105at 1650.206 kb on + strand, within OH686_08105at 1650.206 kb on + strand, within OH686_08105at 1650.207 kb on - strand, within OH686_08105at 1650.207 kb on - strand, within OH686_08105at 1650.207 kb on - strand, within OH686_08105at 1650.207 kb on - strand, within OH686_08105at 1650.207 kb on - strand, within OH686_08105at 1650.207 kb on - strand, within OH686_08105at 1650.329 kb on + strand, within OH686_08105at 1650.329 kb on + strand, within OH686_08105at 1650.329 kb on + strand, within OH686_08105at 1650.329 kb on + strand, within OH686_08105at 1650.329 kb on + strand, within OH686_08105at 1650.329 kb on + strand, within OH686_08105at 1650.329 kb on + strand, within OH686_08105at 1650.329 kb on + strand, within OH686_08105at 1650.330 kb on - strand, within OH686_08105at 1650.330 kb on - strand, within OH686_08105at 1650.330 kb on - strand, within OH686_08105at 1650.330 kb on - strand, within OH686_08105at 1650.330 kb on - strand, within OH686_08105at 1650.330 kb on - strand, within OH686_08105at 1650.509 kb on + strand, within OH686_08105at 1650.509 kb on + strand, within OH686_08105at 1650.510 kb on - strand, within OH686_08105at 1650.510 kb on - strand, within OH686_08105at 1650.510 kb on - strand, within OH686_08105at 1650.510 kb on - strand, within OH686_08105at 1650.510 kb on - strand, within OH686_08105at 1650.510 kb on - strand, within OH686_08105at 1650.645 kb on + strand, within OH686_08105at 1650.645 kb on + strand, within OH686_08105at 1650.645 kb on + strand, within OH686_08105at 1650.646 kb on - strand, within OH686_08105at 1650.662 kb on + strand, within OH686_08105at 1650.662 kb on + strand, within OH686_08105at 1650.674 kb on + strand, within OH686_08105at 1650.674 kb on + strand, within OH686_08105at 1650.674 kb on + strand, within OH686_08105at 1650.674 kb on + strand, within OH686_08105at 1650.674 kb on + strand, within OH686_08105at 1650.674 kb on + strand, within OH686_08105at 1650.675 kb on - strand, within OH686_08105at 1650.675 kb on - strand, within OH686_08105at 1650.675 kb on - strand, within OH686_08105at 1650.675 kb on - strand, within OH686_08105at 1650.675 kb on - strand, within OH686_08105at 1650.878 kb on + strandat 1650.878 kb on + strandat 1650.878 kb on + strandat 1650.878 kb on + strandat 1650.878 kb on + strandat 1650.878 kb on + strandat 1650.878 kb on + strandat 1650.897 kb on + strandat 1650.978 kb on + strandat 1650.979 kb on - strandat 1651.003 kb on - strandat 1651.908 kb on + strandat 1651.908 kb on + strandat 1651.908 kb on + strandat 1651.909 kb on - strandat 1651.909 kb on - strandat 1651.909 kb on - strandat 1651.909 kb on - strandat 1651.909 kb on - strandat 1651.910 kb on + strandat 1651.911 kb on - strandat 1651.911 kb on - strandat 1651.911 kb on - strandat 1651.932 kb on + strandat 1651.933 kb on - strandat 1652.103 kb on + strand, within OH686_08115at 1652.104 kb on - strand, within OH686_08115at 1652.104 kb on - strand, within OH686_08115at 1652.104 kb on - strand, within OH686_08115at 1652.104 kb on - strand, within OH686_08115at 1652.104 kb on - strand, within OH686_08115at 1652.104 kb on - strand, within OH686_08115at 1652.139 kb on + strand, within OH686_08115at 1652.139 kb on + strand, within OH686_08115at 1652.139 kb on + strand, within OH686_08115at 1652.140 kb on - strand, within OH686_08115at 1652.140 kb on - strand, within OH686_08115at 1652.140 kb on - strand, within OH686_08115at 1652.220 kb on + strand, within OH686_08115at 1652.220 kb on + strand, within OH686_08115at 1652.220 kb on + strand, within OH686_08115at 1652.220 kb on + strand, within OH686_08115at 1652.220 kb on + strand, within OH686_08115at 1652.220 kb on + strand, within OH686_08115at 1652.221 kb on - strand, within OH686_08115at 1652.221 kb on - strand, within OH686_08115at 1652.325 kb on + strand, within OH686_08115at 1652.325 kb on + strand, within OH686_08115at 1652.325 kb on + strand, within OH686_08115at 1652.325 kb on + strand, within OH686_08115at 1652.343 kb on + strand, within OH686_08115at 1652.344 kb on - strand, within OH686_08115at 1652.496 kb on + strand, within OH686_08115at 1652.538 kb on + strand, within OH686_08115at 1652.538 kb on + strand, within OH686_08115at 1652.538 kb on + strand, within OH686_08115at 1652.539 kb on - strand, within OH686_08115at 1652.539 kb on - strand, within OH686_08115at 1652.539 kb on - strand, within OH686_08115at 1652.539 kb on - strand, within OH686_08115at 1652.658 kb on + strand, within OH686_08115at 1652.658 kb on + strand, within OH686_08115at 1652.658 kb on + strand, within OH686_08115at 1652.658 kb on + strand, within OH686_08115at 1652.658 kb on + strand, within OH686_08115at 1652.659 kb on - strand, within OH686_08115at 1652.659 kb on - strand, within OH686_08115at 1652.659 kb on - strand, within OH686_08115at 1652.659 kb on - strand, within OH686_08115at 1652.659 kb on - strand, within OH686_08115at 1652.730 kb on + strand, within OH686_08115at 1652.730 kb on + strand, within OH686_08115at 1652.730 kb on + strand, within OH686_08115at 1652.731 kb on - strand, within OH686_08115at 1652.731 kb on - strand, within OH686_08115at 1652.731 kb on - strand, within OH686_08115at 1652.731 kb on - strand, within OH686_08115at 1652.731 kb on - strand, within OH686_08115at 1652.731 kb on - strand, within OH686_08115at 1652.731 kb on - strand, within OH686_08115at 1652.731 kb on - strand, within OH686_08115at 1652.731 kb on - strand, within OH686_08115at 1652.731 kb on - strand, within OH686_08115at 1652.731 kb on - strand, within OH686_08115at 1652.731 kb on - strand, within OH686_08115at 1652.731 kb on - strand, within OH686_08115

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
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1,650,013 - +0.1
1,650,040 - -0.5
1,650,107 + OH686_08105 0.17 +0.1
1,650,107 + OH686_08105 0.17 +1.3
1,650,107 + OH686_08105 0.17 +0.0
1,650,107 + OH686_08105 0.17 +0.4
1,650,107 + OH686_08105 0.17 +0.6
1,650,107 + OH686_08105 0.17 +0.4
1,650,108 - OH686_08105 0.17 -0.2
1,650,108 - OH686_08105 0.17 +0.2
1,650,108 - OH686_08105 0.17 -0.6
1,650,108 - OH686_08105 0.17 -0.4
1,650,108 - OH686_08105 0.17 +0.2
1,650,116 + OH686_08105 0.17 -0.0
1,650,116 + OH686_08105 0.17 +0.5
1,650,116 + OH686_08105 0.17 +0.4
1,650,117 - OH686_08105 0.18 +0.4
1,650,144 + OH686_08105 0.20 +0.5
1,650,144 + OH686_08105 0.20 -0.4
1,650,145 - OH686_08105 0.20 +0.5
1,650,145 - OH686_08105 0.20 -0.4
1,650,145 - OH686_08105 0.20 -0.6
1,650,145 - OH686_08105 0.20 +1.0
1,650,206 + OH686_08105 0.26 +1.0
1,650,206 + OH686_08105 0.26 -0.3
1,650,206 + OH686_08105 0.26 +0.1
1,650,206 + OH686_08105 0.26 +1.1
1,650,206 + OH686_08105 0.26 -0.6
1,650,207 - OH686_08105 0.27 -0.0
1,650,207 - OH686_08105 0.27 -0.3
1,650,207 - OH686_08105 0.27 +0.4
1,650,207 - OH686_08105 0.27 -0.7
1,650,207 - OH686_08105 0.27 +0.5
1,650,207 - OH686_08105 0.27 -1.2
1,650,329 + OH686_08105 0.39 -0.5
1,650,329 + OH686_08105 0.39 -0.7
1,650,329 + OH686_08105 0.39 -1.3
1,650,329 + OH686_08105 0.39 -0.0
1,650,329 + OH686_08105 0.39 -0.0
1,650,329 + OH686_08105 0.39 +0.4
1,650,329 + OH686_08105 0.39 +0.7
1,650,329 + OH686_08105 0.39 +0.7
1,650,330 - OH686_08105 0.39 +0.2
1,650,330 - OH686_08105 0.39 -0.2
1,650,330 - OH686_08105 0.39 -0.6
1,650,330 - OH686_08105 0.39 -0.1
1,650,330 - OH686_08105 0.39 +0.9
1,650,330 - OH686_08105 0.39 +0.2
1,650,509 + OH686_08105 0.57 +0.2
1,650,509 + OH686_08105 0.57 -0.2
1,650,510 - OH686_08105 0.57 +0.6
1,650,510 - OH686_08105 0.57 -0.3
1,650,510 - OH686_08105 0.57 +0.0
1,650,510 - OH686_08105 0.57 +0.4
1,650,510 - OH686_08105 0.57 -0.6
1,650,510 - OH686_08105 0.57 +0.3
1,650,645 + OH686_08105 0.70 -0.8
1,650,645 + OH686_08105 0.70 -0.3
1,650,645 + OH686_08105 0.70 +0.3
1,650,646 - OH686_08105 0.70 -0.1
1,650,662 + OH686_08105 0.72 -0.0
1,650,662 + OH686_08105 0.72 -1.0
1,650,674 + OH686_08105 0.73 -1.2
1,650,674 + OH686_08105 0.73 -0.8
1,650,674 + OH686_08105 0.73 +0.3
1,650,674 + OH686_08105 0.73 +0.3
1,650,674 + OH686_08105 0.73 -1.1
1,650,674 + OH686_08105 0.73 -0.1
1,650,675 - OH686_08105 0.73 -0.8
1,650,675 - OH686_08105 0.73 -1.0
1,650,675 - OH686_08105 0.73 -0.4
1,650,675 - OH686_08105 0.73 -0.0
1,650,675 - OH686_08105 0.73 -1.0
1,650,878 + +0.8
1,650,878 + -0.2
1,650,878 + +0.7
1,650,878 + -0.7
1,650,878 + -0.6
1,650,878 + -0.0
1,650,878 + +0.2
1,650,897 + -0.5
1,650,978 + +1.0
1,650,979 - -0.0
1,651,003 - +0.5
1,651,908 + +0.7
1,651,908 + -1.0
1,651,908 + +0.4
1,651,909 - +0.3
1,651,909 - +1.0
1,651,909 - +0.9
1,651,909 - +0.1
1,651,909 - -0.3
1,651,910 + -0.5
1,651,911 - +0.5
1,651,911 - -0.5
1,651,911 - -0.1
1,651,932 + -0.1
1,651,933 - -0.1
1,652,103 + OH686_08115 0.12 +0.3
1,652,104 - OH686_08115 0.12 -0.9
1,652,104 - OH686_08115 0.12 -1.3
1,652,104 - OH686_08115 0.12 -1.0
1,652,104 - OH686_08115 0.12 -0.9
1,652,104 - OH686_08115 0.12 -0.6
1,652,104 - OH686_08115 0.12 -2.2
1,652,139 + OH686_08115 0.16 -1.6
1,652,139 + OH686_08115 0.16 -1.9
1,652,139 + OH686_08115 0.16 +1.3
1,652,140 - OH686_08115 0.16 -1.8
1,652,140 - OH686_08115 0.16 -1.6
1,652,140 - OH686_08115 0.16 -1.2
1,652,220 + OH686_08115 0.24 -0.5
1,652,220 + OH686_08115 0.24 -1.8
1,652,220 + OH686_08115 0.24 -3.1
1,652,220 + OH686_08115 0.24 -1.6
1,652,220 + OH686_08115 0.24 -0.8
1,652,220 + OH686_08115 0.24 -1.0
1,652,221 - OH686_08115 0.24 -3.1
1,652,221 - OH686_08115 0.24 -1.2
1,652,325 + OH686_08115 0.34 -0.3
1,652,325 + OH686_08115 0.34 -0.8
1,652,325 + OH686_08115 0.34 -2.1
1,652,325 + OH686_08115 0.34 -0.0
1,652,343 + OH686_08115 0.36 -1.3
1,652,344 - OH686_08115 0.36 -1.0
1,652,496 + OH686_08115 0.51 -2.0
1,652,538 + OH686_08115 0.55 -2.0
1,652,538 + OH686_08115 0.55 -3.2
1,652,538 + OH686_08115 0.55 -2.0
1,652,539 - OH686_08115 0.55 -1.0
1,652,539 - OH686_08115 0.55 -3.2
1,652,539 - OH686_08115 0.55 -4.0
1,652,539 - OH686_08115 0.55 -1.2
1,652,658 + OH686_08115 0.67 -0.3
1,652,658 + OH686_08115 0.67 -0.6
1,652,658 + OH686_08115 0.67 -1.3
1,652,658 + OH686_08115 0.67 +0.3
1,652,658 + OH686_08115 0.67 -2.1
1,652,659 - OH686_08115 0.67 -0.8
1,652,659 - OH686_08115 0.67 -0.3
1,652,659 - OH686_08115 0.67 -1.6
1,652,659 - OH686_08115 0.67 +0.2
1,652,659 - OH686_08115 0.67 -2.3
1,652,730 + OH686_08115 0.74 -2.1
1,652,730 + OH686_08115 0.74 -0.6
1,652,730 + OH686_08115 0.74 -1.2
1,652,731 - OH686_08115 0.74 -2.8
1,652,731 - OH686_08115 0.74 -3.2
1,652,731 - OH686_08115 0.74 -2.2
1,652,731 - OH686_08115 0.74 -3.0
1,652,731 - OH686_08115 0.74 -2.1
1,652,731 - OH686_08115 0.74 +0.3
1,652,731 - OH686_08115 0.74 -2.7
1,652,731 - OH686_08115 0.74 -2.3
1,652,731 - OH686_08115 0.74 -2.4
1,652,731 - OH686_08115 0.74 -3.3
1,652,731 - OH686_08115 0.74 -1.8
1,652,731 - OH686_08115 0.74 -2.6
1,652,731 - OH686_08115 0.74 -0.0

Or see this region's nucleotide sequence