Strain Fitness in Pseudomonas sp. S08-1 around OH686_03890

Experiment: D,L-Malic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_03880 and OH686_03885 are separated by 105 nucleotidesOH686_03885 and OH686_03890 overlap by 4 nucleotidesOH686_03890 and OH686_03895 overlap by 20 nucleotidesOH686_03895 and OH686_03900 overlap by 4 nucleotides OH686_03880: OH686_03880 - hypothetical protein, at 803,417 to 803,824 _03880 OH686_03885: OH686_03885 - hypothetical protein, at 803,930 to 804,478 _03885 OH686_03890: OH686_03890 - Electron transport complex protein RnfB, at 804,475 to 805,623 _03890 OH686_03895: OH686_03895 - Electron transport complex protein RnfD, at 805,604 to 806,608 _03895 OH686_03900: OH686_03900 - Electron transport complex protein RnfG, at 806,605 to 807,204 _03900 Position (kb) 804 805 806Strain fitness (log2 ratio) -3 -2 -1 0 1at 803.507 kb on + strand, within OH686_03880at 803.507 kb on + strand, within OH686_03880at 803.507 kb on + strand, within OH686_03880at 803.508 kb on - strand, within OH686_03880at 803.526 kb on - strand, within OH686_03880at 803.589 kb on + strand, within OH686_03880at 803.679 kb on + strand, within OH686_03880at 803.693 kb on + strand, within OH686_03880at 803.693 kb on + strand, within OH686_03880at 803.694 kb on - strand, within OH686_03880at 803.694 kb on - strand, within OH686_03880at 803.694 kb on - strand, within OH686_03880at 803.694 kb on - strand, within OH686_03880at 803.694 kb on - strand, within OH686_03880at 803.716 kb on - strand, within OH686_03880at 803.751 kb on + strand, within OH686_03880at 803.751 kb on + strand, within OH686_03880at 803.751 kb on + strand, within OH686_03880at 803.752 kb on - strand, within OH686_03880at 803.752 kb on - strand, within OH686_03880at 803.752 kb on - strand, within OH686_03880at 803.752 kb on - strand, within OH686_03880at 803.752 kb on - strand, within OH686_03880at 803.752 kb on - strand, within OH686_03880at 803.752 kb on - strand, within OH686_03880at 803.763 kb on + strand, within OH686_03880at 803.763 kb on + strand, within OH686_03880at 803.763 kb on + strand, within OH686_03880at 803.763 kb on + strand, within OH686_03880at 803.763 kb on + strand, within OH686_03880at 803.763 kb on + strand, within OH686_03880at 803.763 kb on + strand, within OH686_03880at 803.763 kb on + strand, within OH686_03880at 803.763 kb on + strand, within OH686_03880at 803.763 kb on + strand, within OH686_03880at 803.763 kb on + strand, within OH686_03880at 803.764 kb on - strand, within OH686_03880at 803.764 kb on - strand, within OH686_03880at 803.764 kb on - strand, within OH686_03880at 803.764 kb on - strand, within OH686_03880at 803.764 kb on - strand, within OH686_03880at 803.764 kb on - strand, within OH686_03880at 803.764 kb on - strand, within OH686_03880at 803.819 kb on + strandat 803.819 kb on + strandat 803.819 kb on + strandat 803.819 kb on + strandat 803.820 kb on - strandat 803.820 kb on - strandat 803.820 kb on - strandat 803.867 kb on + strandat 803.867 kb on + strandat 803.868 kb on - strandat 803.892 kb on + strandat 803.892 kb on + strandat 803.892 kb on + strandat 803.892 kb on + strandat 803.892 kb on + strandat 803.893 kb on - strandat 803.893 kb on - strandat 803.893 kb on - strandat 803.893 kb on - strandat 803.893 kb on - strandat 804.122 kb on + strand, within OH686_03885at 804.122 kb on + strand, within OH686_03885at 804.122 kb on + strand, within OH686_03885at 804.122 kb on + strand, within OH686_03885at 804.122 kb on + strand, within OH686_03885at 804.122 kb on + strand, within OH686_03885at 804.122 kb on + strand, within OH686_03885at 804.122 kb on + strand, within OH686_03885at 804.123 kb on - strand, within OH686_03885at 804.123 kb on - strand, within OH686_03885at 804.123 kb on - strand, within OH686_03885at 804.128 kb on + strand, within OH686_03885at 804.128 kb on + strand, within OH686_03885at 804.128 kb on + strand, within OH686_03885at 804.129 kb on - strand, within OH686_03885at 804.129 kb on - strand, within OH686_03885at 804.129 kb on - strand, within OH686_03885at 804.129 kb on - strand, within OH686_03885at 804.129 kb on - strand, within OH686_03885at 804.129 kb on - strand, within OH686_03885at 804.145 kb on - strand, within OH686_03885at 804.578 kb on - strandat 804.918 kb on + strand, within OH686_03890at 805.063 kb on + strand, within OH686_03890at 805.063 kb on + strand, within OH686_03890at 805.064 kb on - strand, within OH686_03890at 805.064 kb on - strand, within OH686_03890at 805.064 kb on - strand, within OH686_03890at 805.064 kb on - strand, within OH686_03890at 805.064 kb on - strand, within OH686_03890at 805.249 kb on - strand, within OH686_03890at 805.286 kb on + strand, within OH686_03890at 805.286 kb on + strand, within OH686_03890at 805.286 kb on + strand, within OH686_03890at 805.287 kb on - strand, within OH686_03890at 805.461 kb on - strand, within OH686_03890at 805.487 kb on - strand, within OH686_03890at 805.610 kb on - strandat 805.889 kb on + strand, within OH686_03895at 805.889 kb on + strand, within OH686_03895at 805.889 kb on + strand, within OH686_03895at 805.889 kb on + strand, within OH686_03895at 805.890 kb on - strand, within OH686_03895at 805.890 kb on - strand, within OH686_03895at 805.890 kb on - strand, within OH686_03895at 805.890 kb on - strand, within OH686_03895at 806.474 kb on + strand, within OH686_03895at 806.474 kb on + strand, within OH686_03895at 806.474 kb on + strand, within OH686_03895at 806.474 kb on + strand, within OH686_03895at 806.475 kb on - strand, within OH686_03895at 806.475 kb on - strand, within OH686_03895at 806.475 kb on - strand, within OH686_03895at 806.475 kb on - strand, within OH686_03895at 806.475 kb on - strand, within OH686_03895at 806.475 kb on - strand, within OH686_03895at 806.475 kb on - strand, within OH686_03895at 806.504 kb on + strand, within OH686_03895at 806.504 kb on + strand, within OH686_03895at 806.504 kb on + strand, within OH686_03895at 806.504 kb on + strand, within OH686_03895at 806.505 kb on - strand, within OH686_03895at 806.505 kb on - strand, within OH686_03895at 806.505 kb on - strand, within OH686_03895at 806.505 kb on - strand, within OH686_03895

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
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803,507 + OH686_03880 0.22 -0.1
803,507 + OH686_03880 0.22 -0.3
803,507 + OH686_03880 0.22 +0.8
803,508 - OH686_03880 0.22 +0.2
803,526 - OH686_03880 0.27 -0.5
803,589 + OH686_03880 0.42 -0.1
803,679 + OH686_03880 0.64 -0.0
803,693 + OH686_03880 0.68 +0.8
803,693 + OH686_03880 0.68 +0.5
803,694 - OH686_03880 0.68 +0.1
803,694 - OH686_03880 0.68 +0.5
803,694 - OH686_03880 0.68 +0.0
803,694 - OH686_03880 0.68 +0.4
803,694 - OH686_03880 0.68 +0.2
803,716 - OH686_03880 0.73 +0.4
803,751 + OH686_03880 0.82 -0.3
803,751 + OH686_03880 0.82 -0.8
803,751 + OH686_03880 0.82 -0.4
803,752 - OH686_03880 0.82 +0.4
803,752 - OH686_03880 0.82 +0.1
803,752 - OH686_03880 0.82 -0.8
803,752 - OH686_03880 0.82 +0.2
803,752 - OH686_03880 0.82 -0.2
803,752 - OH686_03880 0.82 -0.2
803,752 - OH686_03880 0.82 +0.6
803,763 + OH686_03880 0.85 -0.7
803,763 + OH686_03880 0.85 -0.3
803,763 + OH686_03880 0.85 +0.2
803,763 + OH686_03880 0.85 -2.3
803,763 + OH686_03880 0.85 +0.1
803,763 + OH686_03880 0.85 +0.3
803,763 + OH686_03880 0.85 +0.2
803,763 + OH686_03880 0.85 -0.3
803,763 + OH686_03880 0.85 +0.7
803,763 + OH686_03880 0.85 +0.1
803,763 + OH686_03880 0.85 +0.2
803,764 - OH686_03880 0.85 +0.9
803,764 - OH686_03880 0.85 -0.2
803,764 - OH686_03880 0.85 +0.1
803,764 - OH686_03880 0.85 +0.0
803,764 - OH686_03880 0.85 -0.1
803,764 - OH686_03880 0.85 -0.2
803,764 - OH686_03880 0.85 +0.5
803,819 + -0.5
803,819 + -0.1
803,819 + -1.3
803,819 + +0.5
803,820 - +0.3
803,820 - -0.3
803,820 - +0.7
803,867 + +0.1
803,867 + -0.0
803,868 - +1.3
803,892 + +0.7
803,892 + -0.0
803,892 + +0.3
803,892 + -0.4
803,892 + -1.1
803,893 - -0.1
803,893 - +0.7
803,893 - +1.4
803,893 - -0.8
803,893 - -0.5
804,122 + OH686_03885 0.35 +0.7
804,122 + OH686_03885 0.35 -2.8
804,122 + OH686_03885 0.35 +0.7
804,122 + OH686_03885 0.35 -0.0
804,122 + OH686_03885 0.35 -1.4
804,122 + OH686_03885 0.35 -1.0
804,122 + OH686_03885 0.35 -0.5
804,122 + OH686_03885 0.35 +0.2
804,123 - OH686_03885 0.35 -0.2
804,123 - OH686_03885 0.35 -0.4
804,123 - OH686_03885 0.35 -1.2
804,128 + OH686_03885 0.36 -1.1
804,128 + OH686_03885 0.36 -0.4
804,128 + OH686_03885 0.36 +1.1
804,129 - OH686_03885 0.36 -0.1
804,129 - OH686_03885 0.36 -1.9
804,129 - OH686_03885 0.36 +0.3
804,129 - OH686_03885 0.36 -0.8
804,129 - OH686_03885 0.36 +0.5
804,129 - OH686_03885 0.36 +0.5
804,145 - OH686_03885 0.39 +0.4
804,578 - -0.1
804,918 + OH686_03890 0.39 +0.4
805,063 + OH686_03890 0.51 -0.6
805,063 + OH686_03890 0.51 -0.9
805,064 - OH686_03890 0.51 +0.4
805,064 - OH686_03890 0.51 -0.7
805,064 - OH686_03890 0.51 +0.3
805,064 - OH686_03890 0.51 +0.4
805,064 - OH686_03890 0.51 -1.3
805,249 - OH686_03890 0.67 +0.6
805,286 + OH686_03890 0.71 -0.6
805,286 + OH686_03890 0.71 -0.9
805,286 + OH686_03890 0.71 +1.1
805,287 - OH686_03890 0.71 -0.3
805,461 - OH686_03890 0.86 +0.1
805,487 - OH686_03890 0.88 -0.8
805,610 - -0.2
805,889 + OH686_03895 0.28 -0.2
805,889 + OH686_03895 0.28 +0.3
805,889 + OH686_03895 0.28 -0.7
805,889 + OH686_03895 0.28 -0.1
805,890 - OH686_03895 0.28 +0.1
805,890 - OH686_03895 0.28 +0.6
805,890 - OH686_03895 0.28 -0.5
805,890 - OH686_03895 0.28 -1.1
806,474 + OH686_03895 0.87 +1.5
806,474 + OH686_03895 0.87 +0.2
806,474 + OH686_03895 0.87 +1.3
806,474 + OH686_03895 0.87 -0.2
806,475 - OH686_03895 0.87 +0.5
806,475 - OH686_03895 0.87 -0.7
806,475 - OH686_03895 0.87 +0.1
806,475 - OH686_03895 0.87 -0.5
806,475 - OH686_03895 0.87 +0.6
806,475 - OH686_03895 0.87 -1.3
806,475 - OH686_03895 0.87 -0.6
806,504 + OH686_03895 0.90 +0.5
806,504 + OH686_03895 0.90 +0.4
806,504 + OH686_03895 0.90 +1.0
806,504 + OH686_03895 0.90 -0.1
806,505 - OH686_03895 0.90 -1.3
806,505 - OH686_03895 0.90 -0.3
806,505 - OH686_03895 0.90 -0.7
806,505 - OH686_03895 0.90 -0.0

Or see this region's nucleotide sequence