Strain Fitness in Pseudomonas sp. S08-1 around OH686_00280

Experiment: D,L-Malic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_00270 and OH686_00275 overlap by 4 nucleotidesOH686_00275 and OH686_00280 are separated by 13 nucleotidesOH686_00280 and OH686_00285 are separated by 70 nucleotides OH686_00270: OH686_00270 - Replication-associated recombination protein RarA, at 54,796 to 56,121 _00270 OH686_00275: OH686_00275 - Fluoride ion transporter CrcB, at 56,118 to 56,492 _00275 OH686_00280: OH686_00280 - serine--tRNA ligase, at 56,506 to 57,786 _00280 OH686_00285: OH686_00285 - Precorrin-2 oxidase or Sirohydrochlorin ferrochelatase activity of CysG / Uroporphyrinogen-III methyltransferase , at 57,857 to 59,236 _00285 Position (kb) 56 57 58Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 55.540 kb on + strand, within OH686_00270at 55.540 kb on + strand, within OH686_00270at 55.540 kb on + strand, within OH686_00270at 55.540 kb on + strand, within OH686_00270at 55.540 kb on + strand, within OH686_00270at 55.540 kb on + strand, within OH686_00270at 55.540 kb on + strand, within OH686_00270at 55.540 kb on + strand, within OH686_00270at 55.540 kb on + strand, within OH686_00270at 55.540 kb on + strand, within OH686_00270at 55.540 kb on + strand, within OH686_00270at 55.541 kb on - strand, within OH686_00270at 55.541 kb on - strand, within OH686_00270at 55.541 kb on - strand, within OH686_00270at 55.541 kb on - strand, within OH686_00270at 55.541 kb on - strand, within OH686_00270at 55.541 kb on - strand, within OH686_00270at 55.541 kb on - strand, within OH686_00270at 55.600 kb on + strand, within OH686_00270at 55.600 kb on + strand, within OH686_00270at 55.600 kb on + strand, within OH686_00270at 55.600 kb on + strand, within OH686_00270at 55.600 kb on + strand, within OH686_00270at 55.601 kb on - strand, within OH686_00270at 55.601 kb on - strand, within OH686_00270at 55.601 kb on - strand, within OH686_00270at 55.601 kb on - strand, within OH686_00270at 55.601 kb on - strand, within OH686_00270at 55.601 kb on - strand, within OH686_00270at 55.607 kb on - strand, within OH686_00270at 55.607 kb on - strand, within OH686_00270at 55.642 kb on + strand, within OH686_00270at 55.665 kb on + strand, within OH686_00270at 55.789 kb on + strand, within OH686_00270at 55.790 kb on - strand, within OH686_00270at 55.790 kb on - strand, within OH686_00270at 55.790 kb on - strand, within OH686_00270at 55.822 kb on + strand, within OH686_00270at 55.822 kb on + strand, within OH686_00270at 55.822 kb on + strand, within OH686_00270at 55.822 kb on + strand, within OH686_00270at 55.822 kb on + strand, within OH686_00270at 55.822 kb on + strand, within OH686_00270at 55.822 kb on + strand, within OH686_00270at 55.822 kb on + strand, within OH686_00270at 55.822 kb on + strand, within OH686_00270at 55.822 kb on + strand, within OH686_00270at 55.823 kb on - strand, within OH686_00270at 55.823 kb on - strand, within OH686_00270at 55.823 kb on - strand, within OH686_00270at 55.823 kb on - strand, within OH686_00270at 55.823 kb on - strand, within OH686_00270at 55.823 kb on - strand, within OH686_00270at 55.823 kb on - strand, within OH686_00270at 55.823 kb on - strand, within OH686_00270at 55.823 kb on - strand, within OH686_00270at 55.823 kb on - strand, within OH686_00270at 55.823 kb on - strand, within OH686_00270at 55.823 kb on - strand, within OH686_00270at 55.823 kb on - strand, within OH686_00270at 55.823 kb on - strand, within OH686_00270at 55.823 kb on - strand, within OH686_00270at 55.939 kb on + strand, within OH686_00270at 55.940 kb on - strand, within OH686_00270at 55.940 kb on - strand, within OH686_00270at 55.969 kb on + strand, within OH686_00270at 55.969 kb on + strand, within OH686_00270at 55.969 kb on + strand, within OH686_00270at 55.969 kb on + strand, within OH686_00270at 55.969 kb on + strand, within OH686_00270at 55.969 kb on + strand, within OH686_00270at 55.987 kb on + strand, within OH686_00270at 55.987 kb on + strand, within OH686_00270at 55.987 kb on + strand, within OH686_00270at 55.987 kb on + strand, within OH686_00270at 55.987 kb on + strand, within OH686_00270at 55.988 kb on - strand, within OH686_00270at 55.988 kb on - strand, within OH686_00270at 55.988 kb on - strand, within OH686_00270at 56.017 kb on + strandat 56.017 kb on + strandat 56.018 kb on - strandat 56.020 kb on + strandat 56.020 kb on + strandat 56.020 kb on + strandat 56.020 kb on + strandat 56.021 kb on - strandat 56.021 kb on - strandat 56.066 kb on + strandat 56.066 kb on + strandat 56.066 kb on + strandat 56.066 kb on + strandat 56.067 kb on - strandat 56.067 kb on - strandat 56.067 kb on - strandat 56.067 kb on - strandat 56.162 kb on + strand, within OH686_00275at 56.162 kb on + strand, within OH686_00275at 56.162 kb on + strand, within OH686_00275at 56.163 kb on - strand, within OH686_00275at 56.163 kb on - strand, within OH686_00275at 56.163 kb on - strand, within OH686_00275at 56.168 kb on - strand, within OH686_00275at 56.168 kb on - strand, within OH686_00275at 56.175 kb on + strand, within OH686_00275at 56.220 kb on + strand, within OH686_00275at 56.220 kb on + strand, within OH686_00275at 56.220 kb on + strand, within OH686_00275at 56.220 kb on + strand, within OH686_00275at 56.268 kb on + strand, within OH686_00275at 56.268 kb on + strand, within OH686_00275at 56.274 kb on + strand, within OH686_00275at 56.274 kb on + strand, within OH686_00275at 56.274 kb on + strand, within OH686_00275at 56.274 kb on + strand, within OH686_00275at 56.274 kb on + strand, within OH686_00275at 57.807 kb on + strandat 57.807 kb on + strandat 57.808 kb on - strandat 57.836 kb on + strandat 57.836 kb on + strandat 57.837 kb on - strandat 57.837 kb on - strandat 57.837 kb on - strandat 58.114 kb on + strand, within OH686_00285at 58.114 kb on + strand, within OH686_00285at 58.114 kb on + strand, within OH686_00285at 58.114 kb on + strand, within OH686_00285at 58.114 kb on + strand, within OH686_00285at 58.114 kb on + strand, within OH686_00285at 58.114 kb on + strand, within OH686_00285at 58.114 kb on + strand, within OH686_00285at 58.114 kb on + strand, within OH686_00285at 58.114 kb on + strand, within OH686_00285at 58.114 kb on + strand, within OH686_00285at 58.114 kb on + strand, within OH686_00285at 58.114 kb on + strand, within OH686_00285at 58.114 kb on + strand, within OH686_00285at 58.115 kb on - strand, within OH686_00285at 58.115 kb on - strand, within OH686_00285at 58.115 kb on - strand, within OH686_00285at 58.115 kb on - strand, within OH686_00285at 58.115 kb on - strand, within OH686_00285at 58.115 kb on - strand, within OH686_00285at 58.115 kb on - strand, within OH686_00285at 58.115 kb on - strand, within OH686_00285at 58.115 kb on - strand, within OH686_00285at 58.115 kb on - strand, within OH686_00285at 58.115 kb on - strand, within OH686_00285at 58.115 kb on - strand, within OH686_00285at 58.115 kb on - strand, within OH686_00285at 58.115 kb on - strand, within OH686_00285at 58.115 kb on - strand, within OH686_00285at 58.301 kb on + strand, within OH686_00285at 58.301 kb on + strand, within OH686_00285at 58.301 kb on + strand, within OH686_00285at 58.301 kb on + strand, within OH686_00285at 58.301 kb on + strand, within OH686_00285at 58.301 kb on + strand, within OH686_00285at 58.301 kb on + strand, within OH686_00285at 58.301 kb on + strand, within OH686_00285at 58.301 kb on + strand, within OH686_00285at 58.302 kb on - strand, within OH686_00285at 58.302 kb on - strand, within OH686_00285at 58.302 kb on - strand, within OH686_00285at 58.302 kb on - strand, within OH686_00285at 58.302 kb on - strand, within OH686_00285at 58.302 kb on - strand, within OH686_00285at 58.302 kb on - strand, within OH686_00285at 58.505 kb on + strand, within OH686_00285at 58.505 kb on + strand, within OH686_00285at 58.506 kb on - strand, within OH686_00285at 58.506 kb on - strand, within OH686_00285at 58.506 kb on - strand, within OH686_00285at 58.506 kb on - strand, within OH686_00285at 58.506 kb on - strand, within OH686_00285at 58.589 kb on + strand, within OH686_00285at 58.589 kb on + strand, within OH686_00285at 58.590 kb on - strand, within OH686_00285at 58.590 kb on - strand, within OH686_00285at 58.649 kb on + strand, within OH686_00285at 58.649 kb on + strand, within OH686_00285at 58.649 kb on + strand, within OH686_00285at 58.649 kb on + strand, within OH686_00285at 58.649 kb on + strand, within OH686_00285at 58.649 kb on + strand, within OH686_00285at 58.649 kb on + strand, within OH686_00285at 58.649 kb on + strand, within OH686_00285at 58.649 kb on + strand, within OH686_00285at 58.649 kb on + strand, within OH686_00285at 58.649 kb on + strand, within OH686_00285at 58.649 kb on + strand, within OH686_00285at 58.649 kb on + strand, within OH686_00285at 58.649 kb on + strand, within OH686_00285at 58.649 kb on + strand, within OH686_00285at 58.650 kb on - strand, within OH686_00285at 58.650 kb on - strand, within OH686_00285at 58.650 kb on - strand, within OH686_00285at 58.650 kb on - strand, within OH686_00285at 58.650 kb on - strand, within OH686_00285at 58.650 kb on - strand, within OH686_00285at 58.650 kb on - strand, within OH686_00285at 58.650 kb on - strand, within OH686_00285at 58.650 kb on - strand, within OH686_00285at 58.650 kb on - strand, within OH686_00285at 58.650 kb on - strand, within OH686_00285at 58.650 kb on - strand, within OH686_00285at 58.650 kb on - strand, within OH686_00285at 58.650 kb on - strand, within OH686_00285at 58.650 kb on - strand, within OH686_00285at 58.650 kb on - strand, within OH686_00285

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Malic Acid (C)
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55,540 + OH686_00270 0.56 +0.4
55,540 + OH686_00270 0.56 +0.4
55,540 + OH686_00270 0.56 -0.1
55,540 + OH686_00270 0.56 -0.7
55,540 + OH686_00270 0.56 -0.2
55,540 + OH686_00270 0.56 +0.4
55,540 + OH686_00270 0.56 -0.4
55,540 + OH686_00270 0.56 -0.0
55,540 + OH686_00270 0.56 +0.8
55,540 + OH686_00270 0.56 -0.7
55,540 + OH686_00270 0.56 +0.4
55,541 - OH686_00270 0.56 +0.3
55,541 - OH686_00270 0.56 -1.4
55,541 - OH686_00270 0.56 +0.8
55,541 - OH686_00270 0.56 -0.2
55,541 - OH686_00270 0.56 -0.7
55,541 - OH686_00270 0.56 -0.5
55,541 - OH686_00270 0.56 -0.2
55,600 + OH686_00270 0.61 +0.3
55,600 + OH686_00270 0.61 +0.1
55,600 + OH686_00270 0.61 +1.4
55,600 + OH686_00270 0.61 +0.1
55,600 + OH686_00270 0.61 -1.2
55,601 - OH686_00270 0.61 +0.0
55,601 - OH686_00270 0.61 -1.3
55,601 - OH686_00270 0.61 -0.4
55,601 - OH686_00270 0.61 +0.4
55,601 - OH686_00270 0.61 -0.3
55,601 - OH686_00270 0.61 +1.3
55,607 - OH686_00270 0.61 -0.5
55,607 - OH686_00270 0.61 -0.2
55,642 + OH686_00270 0.64 -0.7
55,665 + OH686_00270 0.66 -0.4
55,789 + OH686_00270 0.75 -0.5
55,790 - OH686_00270 0.75 -0.1
55,790 - OH686_00270 0.75 -0.4
55,790 - OH686_00270 0.75 -1.4
55,822 + OH686_00270 0.77 +0.3
55,822 + OH686_00270 0.77 -0.0
55,822 + OH686_00270 0.77 -0.7
55,822 + OH686_00270 0.77 -0.1
55,822 + OH686_00270 0.77 +0.0
55,822 + OH686_00270 0.77 -0.1
55,822 + OH686_00270 0.77 -0.0
55,822 + OH686_00270 0.77 -0.4
55,822 + OH686_00270 0.77 -0.1
55,822 + OH686_00270 0.77 -0.2
55,823 - OH686_00270 0.77 +0.3
55,823 - OH686_00270 0.77 -0.9
55,823 - OH686_00270 0.77 -1.2
55,823 - OH686_00270 0.77 +0.4
55,823 - OH686_00270 0.77 -0.3
55,823 - OH686_00270 0.77 +0.2
55,823 - OH686_00270 0.77 +0.4
55,823 - OH686_00270 0.77 +0.5
55,823 - OH686_00270 0.77 +1.8
55,823 - OH686_00270 0.77 -0.0
55,823 - OH686_00270 0.77 -0.2
55,823 - OH686_00270 0.77 -1.5
55,823 - OH686_00270 0.77 -0.4
55,823 - OH686_00270 0.77 -2.3
55,823 - OH686_00270 0.77 -0.7
55,939 + OH686_00270 0.86 -0.6
55,940 - OH686_00270 0.86 -0.4
55,940 - OH686_00270 0.86 +0.4
55,969 + OH686_00270 0.88 -0.3
55,969 + OH686_00270 0.88 +0.7
55,969 + OH686_00270 0.88 -0.2
55,969 + OH686_00270 0.88 -0.7
55,969 + OH686_00270 0.88 +0.6
55,969 + OH686_00270 0.88 +1.7
55,987 + OH686_00270 0.90 -0.7
55,987 + OH686_00270 0.90 +0.7
55,987 + OH686_00270 0.90 -0.6
55,987 + OH686_00270 0.90 -0.5
55,987 + OH686_00270 0.90 -0.2
55,988 - OH686_00270 0.90 -0.3
55,988 - OH686_00270 0.90 -0.4
55,988 - OH686_00270 0.90 -0.2
56,017 + +0.3
56,017 + -1.7
56,018 - -1.0
56,020 + -0.2
56,020 + +0.2
56,020 + -0.3
56,020 + -0.1
56,021 - -1.3
56,021 - -0.2
56,066 + -2.6
56,066 + -1.7
56,066 + -0.3
56,066 + +0.1
56,067 - +0.1
56,067 - +0.8
56,067 - -0.6
56,067 - -2.1
56,162 + OH686_00275 0.12 +1.0
56,162 + OH686_00275 0.12 -0.7
56,162 + OH686_00275 0.12 +0.5
56,163 - OH686_00275 0.12 -1.3
56,163 - OH686_00275 0.12 -1.8
56,163 - OH686_00275 0.12 -0.3
56,168 - OH686_00275 0.13 -0.3
56,168 - OH686_00275 0.13 +0.5
56,175 + OH686_00275 0.15 +1.3
56,220 + OH686_00275 0.27 -0.3
56,220 + OH686_00275 0.27 -1.3
56,220 + OH686_00275 0.27 -1.0
56,220 + OH686_00275 0.27 +0.3
56,268 + OH686_00275 0.40 +0.6
56,268 + OH686_00275 0.40 -0.7
56,274 + OH686_00275 0.42 -0.2
56,274 + OH686_00275 0.42 -0.2
56,274 + OH686_00275 0.42 +0.6
56,274 + OH686_00275 0.42 +0.8
56,274 + OH686_00275 0.42 +0.0
57,807 + -0.4
57,807 + -0.5
57,808 - +1.1
57,836 + -0.7
57,836 + -0.2
57,837 - -0.8
57,837 - +0.1
57,837 - +0.5
58,114 + OH686_00285 0.19 -1.5
58,114 + OH686_00285 0.19 -1.2
58,114 + OH686_00285 0.19 -0.7
58,114 + OH686_00285 0.19 -1.4
58,114 + OH686_00285 0.19 -0.5
58,114 + OH686_00285 0.19 -1.6
58,114 + OH686_00285 0.19 -1.7
58,114 + OH686_00285 0.19 -1.7
58,114 + OH686_00285 0.19 -2.2
58,114 + OH686_00285 0.19 -0.8
58,114 + OH686_00285 0.19 -2.6
58,114 + OH686_00285 0.19 -1.3
58,114 + OH686_00285 0.19 -1.0
58,114 + OH686_00285 0.19 -1.8
58,115 - OH686_00285 0.19 -1.7
58,115 - OH686_00285 0.19 -1.3
58,115 - OH686_00285 0.19 -1.7
58,115 - OH686_00285 0.19 -2.3
58,115 - OH686_00285 0.19 -1.2
58,115 - OH686_00285 0.19 -2.7
58,115 - OH686_00285 0.19 -3.3
58,115 - OH686_00285 0.19 +0.0
58,115 - OH686_00285 0.19 -1.2
58,115 - OH686_00285 0.19 -0.7
58,115 - OH686_00285 0.19 -0.2
58,115 - OH686_00285 0.19 -1.5
58,115 - OH686_00285 0.19 -2.0
58,115 - OH686_00285 0.19 -1.3
58,115 - OH686_00285 0.19 -3.4
58,301 + OH686_00285 0.32 -0.5
58,301 + OH686_00285 0.32 -0.8
58,301 + OH686_00285 0.32 -0.7
58,301 + OH686_00285 0.32 -1.5
58,301 + OH686_00285 0.32 +0.4
58,301 + OH686_00285 0.32 -0.4
58,301 + OH686_00285 0.32 -1.5
58,301 + OH686_00285 0.32 -2.0
58,301 + OH686_00285 0.32 -1.3
58,302 - OH686_00285 0.32 -1.1
58,302 - OH686_00285 0.32 -2.3
58,302 - OH686_00285 0.32 -2.5
58,302 - OH686_00285 0.32 -1.4
58,302 - OH686_00285 0.32 -2.3
58,302 - OH686_00285 0.32 -1.2
58,302 - OH686_00285 0.32 -1.0
58,505 + OH686_00285 0.47 -1.6
58,505 + OH686_00285 0.47 -1.6
58,506 - OH686_00285 0.47 +0.3
58,506 - OH686_00285 0.47 -1.7
58,506 - OH686_00285 0.47 -3.1
58,506 - OH686_00285 0.47 -0.8
58,506 - OH686_00285 0.47 -2.7
58,589 + OH686_00285 0.53 +0.6
58,589 + OH686_00285 0.53 -2.5
58,590 - OH686_00285 0.53 -1.6
58,590 - OH686_00285 0.53 -1.1
58,649 + OH686_00285 0.57 -1.7
58,649 + OH686_00285 0.57 -0.7
58,649 + OH686_00285 0.57 -3.0
58,649 + OH686_00285 0.57 -1.6
58,649 + OH686_00285 0.57 -0.6
58,649 + OH686_00285 0.57 -1.7
58,649 + OH686_00285 0.57 -3.4
58,649 + OH686_00285 0.57 +0.3
58,649 + OH686_00285 0.57 -1.7
58,649 + OH686_00285 0.57 -1.5
58,649 + OH686_00285 0.57 -2.9
58,649 + OH686_00285 0.57 -0.6
58,649 + OH686_00285 0.57 -1.5
58,649 + OH686_00285 0.57 -3.5
58,649 + OH686_00285 0.57 -2.1
58,650 - OH686_00285 0.57 -1.7
58,650 - OH686_00285 0.57 -2.6
58,650 - OH686_00285 0.57 -1.2
58,650 - OH686_00285 0.57 -1.9
58,650 - OH686_00285 0.57 -2.3
58,650 - OH686_00285 0.57 -1.9
58,650 - OH686_00285 0.57 -0.5
58,650 - OH686_00285 0.57 -0.2
58,650 - OH686_00285 0.57 -2.2
58,650 - OH686_00285 0.57 -0.7
58,650 - OH686_00285 0.57 -3.5
58,650 - OH686_00285 0.57 -0.3
58,650 - OH686_00285 0.57 -1.2
58,650 - OH686_00285 0.57 -2.4
58,650 - OH686_00285 0.57 -0.7
58,650 - OH686_00285 0.57 -3.3

Or see this region's nucleotide sequence